IVF0017252 (gene) Melon (IVF77) v1

Overview


Name	IVF0017252
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Pol protein
Location	chr03: 3271010 .. 3271255 (-)
RNA-Seq Expression	IVF0017252
Synteny	IVF0017252

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGCCACCGCCCGCTTTAAGTTCCTCCTCCTCTGTAGCTGTCCGCCTCGCAACGTTGCCGTCCCCTCCTGTCGATTTCAGCGTTCCGTCTCCGCCGCCATCGTCCGCACATGCGACGACATCTCTACGCCGGCAGCTTCGGACGAACGCAAGGGAGTCGGCCGTCTCTGCCGCAGTCGGTTTTAGCAAGCACCTATGTGAAGCCGAGCCAAGTCAAGCCGAGTCGAGTCGAAAACCGAGCTGA

mRNA sequence

ATGCCGCCACCGCCCGCTTTAAGTTCCTCCTCCTCTGTAGCTGTCCGCCTCGCAACGTTGCCGTCCCCTCCTGTCGATTTCAGCGTTCCGTCTCCGCCGCCATCGTCCGCACATGCGACGACATCTCTACGCCGGCAGCTTCGGACGAACGCAAGGGAGTCGGCCGTCTCTGCCGCAGTCGGTTTTAGCAAGCACCTATGTGAAGCCGAGCCAAGTCAAGCCGAGTCGAGTCGAAAACCGAGCTGA

Coding sequence (CDS)

ATGCCGCCACCGCCCGCTTTAAGTTCCTCCTCCTCTGTAGCTGTCCGCCTCGCAACGTTGCCGTCCCCTCCTGTCGATTTCAGCGTTCCGTCTCCGCCGCCATCGTCCGCACATGCGACGACATCTCTACGCCGGCAGCTTCGGACGAACGCAAGGGAGTCGGCCGTCTCTGCCGCAGTCGGTTTTAGCAAGCACCTATGTGAAGCCGAGCCAAGTCAAGCCGAGTCGAGTCGAAAACCGAGCTGA

Protein sequence

MPPPPALSSSSSVAVRLATLPSPPVDFSVPSPPPSSAHATTSLRRQLRTNARESAVSAAVGFSKHLCEAEPSQAESSRKPS

Homology

[Close]

BLAST of IVF0017252 vs. ExPASy TrEMBL
Match: A0A5A7UGT9 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43052G001910 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 4.7e-20
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1  MPPPPALSSSSSVAVRLATLPSPPVDFSVPSPPPSSAHATTSLRRQLRTNARESAVSAA 60
          MPPPPALSSSSSVAVRLATLPSPPVDFSVPSPPPSSAHATTSLRRQLRTNARESAVSAA
Sbjct: 1  MPPPPALSSSSSVAVRLATLPSPPVDFSVPSPPPSSAHATTSLRRQLRTNARESAVSAA 59

[Close]

BLAST of IVF0017252 vs. ExPASy TrEMBL
Match: A0A5D3DLD4 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G002550 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 2.6e-18
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1  MPPPPALSSSSSVAVRLATLPSPPVDFSVPSPPPSSAHATTSLRRQLRTNARESA 56
          MPPPPALSSSSSVAVRLATLPSPPVDFSVPSPPPSSAHATTSLRRQLRTNARESA
Sbjct: 1  MPPPPALSSSSSVAVRLATLPSPPVDFSVPSPPPSSAHATTSLRRQLRTNARESA 55

[Close]

BLAST of IVF0017252 vs. ExPASy TrEMBL
Match: A0A5D3DDX8 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1721G00280 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.1e-05
Identity = 37/58 (63.79%), Postives = 40/58 (68.97%), Query Frame = 0


Query: 4    PPALSSSSSVAVRLATLPSPPVDFSVPSPPPSSAHATTSLRRQLRTNARESAVSAAVG 62
            PP +S+    A      PSPP+ FSV SPPPSS  AT SLRRQLRTN RES VSAAVG
Sbjct: 1030 PPVISACLPTAP-----PSPPLHFSVSSPPPSSTQATISLRRQLRTNPRESVVSAAVG 1082

[Close]

BLAST of IVF0017252 vs. NCBI nr
Match: KAA0055032.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 107 bits (266), Expect = 7.68e-27
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1  MPPPPALSSSSSVAVRLATLPSPPVDFSVPSPPPSSAHATTSLRRQLRTNARESAVSAA 59
          MPPPPALSSSSSVAVRLATLPSPPVDFSVPSPPPSSAHATTSLRRQLRTNARESAVSAA
Sbjct: 1  MPPPPALSSSSSVAVRLATLPSPPVDFSVPSPPPSSAHATTSLRRQLRTNARESAVSAA 59

[Close]

BLAST of IVF0017252 vs. NCBI nr
Match: TYK24446.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 102 bits (253), Expect = 6.31e-25
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1  MPPPPALSSSSSVAVRLATLPSPPVDFSVPSPPPSSAHATTSLRRQLRTNARESA 55
          MPPPPALSSSSSVAVRLATLPSPPVDFSVPSPPPSSAHATTSLRRQLRTNARESA
Sbjct: 1  MPPPPALSSSSSVAVRLATLPSPPVDFSVPSPPPSSAHATTSLRRQLRTNARESA 55

[Close]

BLAST of IVF0017252 vs. NCBI nr
Match: TYK21774.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 59.3 bits (142), Expect = 6.26e-08
Identity = 33/41 (80.49%), Postives = 34/41 (82.93%), Query Frame = 0


Query: 21   PSPPVDFSVPSPPPSSAHATTSLRRQLRTNARESAVSAAVG 61
            PSPP+ FSV SPPPSS  AT SLRRQLRTN RES VSAAVG
Sbjct: 1042 PSPPLHFSVSSPPPSSTQATISLRRQLRTNPRESVVSAAVG 1082

The following BLAST results are available for this feature:

BLAST of IVF0017252 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0017252 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UGT9	4.7e-20	100.00	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43052G001910...	[more]
A0A5D3DLD4	2.6e-18	100.00	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G002550 P...	[more]
A0A5D3DDX8	1.1e-05	63.79	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1721G00280 P...	[more]

BLAST of IVF0017252 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0055032.1	7.68e-27	100.00	pol protein [Cucumis melo var. makuwa]	[more]
TYK24446.1	6.31e-25	100.00	pol protein [Cucumis melo var. makuwa]	[more]
TYK21774.1	6.26e-08	80.49	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0017252 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..45

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0017252.2	IVF0017252.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding