IVF0017226 (gene) Melon (IVF77) v1

Overview


Name	IVF0017226
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Acetyl-CoA carboxylase 1-like
Location	chr10: 5664675 .. 5664845 (+)
RNA-Seq Expression	IVF0017226
Synteny	IVF0017226

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAGGAGAGGGGAAGGCCTTTAATAACACTAGAGTGAAGCATAGAGTGAAGCGGTCGATTAAGGTGCCCACGATTAGTAACAAGCTAGCAGATATGATGATTATTCATGGAGGAAATATGGCCAGAAGCCAATCAAAGGTTCTCCACACCCAAGGCATAAAAATATGA

mRNA sequence

ATGGTAGGAGAGGGGAAGGCCTTTAATAACACTAGAGTGAAGCATAGAGTGAAGCGGTCGATTAAGGTGCCCACGATTAGTAACAAGCTAGCAGATATGATGATTATTCATGGAGGAAATATGGCCAGAAGCCAATCAAAGGTTCTCCACACCCAAGGCATAAAAATATGA

Coding sequence (CDS)

ATGGTAGGAGAGGGGAAGGCCTTTAATAACACTAGAGTGAAGCATAGAGTGAAGCGGTCGATTAAGGTGCCCACGATTAGTAACAAGCTAGCAGATATGATGATTATTCATGGAGGAAATATGGCCAGAAGCCAATCAAAGGTTCTCCACACCCAAGGCATAAAAATATGA

Protein sequence

MVGEGKAFNNTRVKHRVKRSIKVPTISNKLADMMIIHGGNMARSQSKVLHTQGIKI

Homology

[Close]

BLAST of IVF0017226 vs. ExPASy TrEMBL
Match: A0A5A7TKJ7 (Triacylglycerol lipase 1 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G007180 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.2e-16
Identity = 46/52 (88.46%), Postives = 49/52 (94.23%), Query Frame = 0


Query: 1   MVGEGKAFNNTRVKHRVKRSIKVPTISNKLADMMIIHGGNMARSQSKVLHTQ 53
           + G+GKAFNNTRVKHRVK SIKVPTISNKLADMMIIHGGNMA+SQSKVL TQ
Sbjct: 299 ITGKGKAFNNTRVKHRVKWSIKVPTISNKLADMMIIHGGNMAKSQSKVLRTQ 350

[Close]

BLAST of IVF0017226 vs. ExPASy TrEMBL
Match: A0A5A7TLF6 (Transcriptional corepressor LEUNIG_HOMOLOG-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold824G00590 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 3.7e-16
Identity = 44/52 (84.62%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 1   MVGEGKAFNNTRVKHRVKRSIKVPTISNKLADMMIIHGGNMARSQSKVLHTQ 53
           ++ + KAFNNTRVKHRVKRSIKVPTISN+LADMMIIHGGNMA+SQS+VLHTQ
Sbjct: 141 LIRKEKAFNNTRVKHRVKRSIKVPTISNRLADMMIIHGGNMAKSQSRVLHTQ 192

[Close]

BLAST of IVF0017226 vs. ExPASy TrEMBL
Match: A0A5D3DTC4 (Heat stress transcription factor A-2d-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold124G00780 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.4e-15
Identity = 43/48 (89.58%), Postives = 47/48 (97.92%), Query Frame = 0


Query: 1   MVGEGKAFNNTRVKHRVKRSIKVPTISNKLADMMIIHGGNMARSQSKV 49
           + G+GKAFNNTRVKHRVKRSIKVPTISNKLADMMIIHGGNMA+SQSK+
Sbjct: 302 ITGKGKAFNNTRVKHRVKRSIKVPTISNKLADMMIIHGGNMAKSQSKI 349

[Close]

BLAST of IVF0017226 vs. ExPASy TrEMBL
Match: A0A5A7U8V0 (Acetyl-CoA carboxylase 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G00940 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.2e-14
Identity = 42/48 (87.50%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 1   MVGEGKAFNNTRVKHRVKRSIKVPTISNKLADMMIIHGGNMARSQSKV 49
           + G+GKAFNNTRVKHRVK SIKVPTISNKLADMMIIHGGNMA+SQSK+
Sbjct: 118 VTGKGKAFNNTRVKHRVKWSIKVPTISNKLADMMIIHGGNMAKSQSKI 165

[Close]

BLAST of IVF0017226 vs. ExPASy TrEMBL
Match: A0A5A7UHW8 (Triacylglycerol lipase 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43052G00080 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 5.9e-14
Identity = 40/48 (83.33%), Postives = 45/48 (93.75%), Query Frame = 0


Query: 1   MVGEGKAFNNTRVKHRVKRSIKVPTISNKLADMMIIHGGNMARSQSKV 49
           + G+GKAFNNTRVKHRVKR IKVPTISNKL D+MIIHGGNMA+SQSK+
Sbjct: 224 ITGKGKAFNNTRVKHRVKRYIKVPTISNKLVDVMIIHGGNMAKSQSKI 271

[Close]

BLAST of IVF0017226 vs. NCBI nr
Match: KAA0042275.1 (transcriptional corepressor LEUNIG_HOMOLOG-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 93.2 bits (230), Expect = 3.68e-21
Identity = 44/52 (84.62%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 1   MVGEGKAFNNTRVKHRVKRSIKVPTISNKLADMMIIHGGNMARSQSKVLHTQ 52
           ++ + KAFNNTRVKHRVKRSIKVPTISN+LADMMIIHGGNMA+SQS+VLHTQ
Sbjct: 141 LIRKEKAFNNTRVKHRVKRSIKVPTISNRLADMMIIHGGNMAKSQSRVLHTQ 192

[Close]

BLAST of IVF0017226 vs. NCBI nr
Match: KAA0042207.1 (triacylglycerol lipase 1 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 94.0 bits (232), Expect = 4.72e-21
Identity = 46/52 (88.46%), Postives = 49/52 (94.23%), Query Frame = 0


Query: 1   MVGEGKAFNNTRVKHRVKRSIKVPTISNKLADMMIIHGGNMARSQSKVLHTQ 52
           + G+GKAFNNTRVKHRVK SIKVPTISNKLADMMIIHGGNMA+SQSKVL TQ
Sbjct: 299 ITGKGKAFNNTRVKHRVKWSIKVPTISNKLADMMIIHGGNMAKSQSKVLRTQ 350

[Close]

BLAST of IVF0017226 vs. NCBI nr
Match: KAA0051708.1 (acetyl-CoA carboxylase 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 88.2 bits (217), Expect = 3.64e-20
Identity = 42/48 (87.50%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 1   MVGEGKAFNNTRVKHRVKRSIKVPTISNKLADMMIIHGGNMARSQSKV 48
           + G+GKAFNNTRVKHRVK SIKVPTISNKLADMMIIHGGNMA+SQSK+
Sbjct: 118 VTGKGKAFNNTRVKHRVKWSIKVPTISNKLADMMIIHGGNMAKSQSKI 165

[Close]

BLAST of IVF0017226 vs. NCBI nr
Match: TYK26778.1 (heat stress transcription factor A-2d-like [Cucumis melo var. makuwa])

HSP 1 Score: 91.3 bits (225), Expect = 5.13e-20
Identity = 43/48 (89.58%), Postives = 47/48 (97.92%), Query Frame = 0


Query: 1   MVGEGKAFNNTRVKHRVKRSIKVPTISNKLADMMIIHGGNMARSQSKV 48
           + G+GKAFNNTRVKHRVKRSIKVPTISNKLADMMIIHGGNMA+SQSK+
Sbjct: 302 ITGKGKAFNNTRVKHRVKRSIKVPTISNKLADMMIIHGGNMAKSQSKI 349

[Close]

BLAST of IVF0017226 vs. NCBI nr
Match: KAA0054890.1 (triacylglycerol lipase 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 85.9 bits (211), Expect = 2.13e-18
Identity = 40/48 (83.33%), Postives = 45/48 (93.75%), Query Frame = 0


Query: 1   MVGEGKAFNNTRVKHRVKRSIKVPTISNKLADMMIIHGGNMARSQSKV 48
           + G+GKAFNNTRVKHRVKR IKVPTISNKL D+MIIHGGNMA+SQSK+
Sbjct: 224 ITGKGKAFNNTRVKHRVKRYIKVPTISNKLVDVMIIHGGNMAKSQSKI 271

The following BLAST results are available for this feature:

BLAST of IVF0017226 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0017226 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TKJ7	2.2e-16	88.46	Triacylglycerol lipase 1 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]
A0A5A7TLF6	3.7e-16	84.62	Transcriptional corepressor LEUNIG_HOMOLOG-like isoform X2 OS=Cucumis melo var. ...	[more]
A0A5D3DTC4	1.4e-15	89.58	Heat stress transcription factor A-2d-like OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A5A7U8V0	1.2e-14	87.50	Acetyl-CoA carboxylase 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7UHW8	5.9e-14	83.33	Triacylglycerol lipase 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]

BLAST of IVF0017226 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0042275.1	3.68e-21	84.62	transcriptional corepressor LEUNIG_HOMOLOG-like isoform X2 [Cucumis melo var. ma...	[more]
KAA0042207.1	4.72e-21	88.46	triacylglycerol lipase 1 isoform X2 [Cucumis melo var. makuwa]	[more]
KAA0051708.1	3.64e-20	87.50	acetyl-CoA carboxylase 1-like [Cucumis melo var. makuwa]	[more]
TYK26778.1	5.13e-20	89.58	heat stress transcription factor A-2d-like [Cucumis melo var. makuwa]	[more]
KAA0054890.1	2.13e-18	83.33	triacylglycerol lipase 1-like [Cucumis melo var. makuwa]	[more]

BLAST of IVF0017226 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018872	Zn-cluster domain	PFAM	PF10533	Plant_zn_clust	coord: 12..32 e-value: 2.7E-7 score: 30.5

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0017226.2	IVF0017226.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006633	fatty acid biosynthetic process
biological_process	GO:0045892	negative regulation of transcription, DNA-templated
molecular_function	GO:0003989	acetyl-CoA carboxylase activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003714	transcription corepressor activity