Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGAAAGTGTTCTAAGAGATGCTTTTGTAACTAGTTTGGAACCTGCCCTTCAAGCTGAAGTTATTAATAGACACCCACAAACCTTGGAGGAATGTATGAAAGAAGCACAACTAGTAAACGACCCTAACTTAGCTTTGAAGCTTGCGAGAGAAGAGTTGGGGTTGCTGGAACCAAAGAGTAGGGAAGACATTGGCAGTAAAAGCAAATAAGGGAATGAGAAAGAGCCTCACAAGAAAACCAAATTTCAAATGAAGCAAGTAACTATCCCAATCAAGGGCATGTATCAAAAGAATGAACCACCAATAAAAAGACTCTCGGTTGCTGAATTTTGTGCTAGGCTAGACAAAGGGTTATGTTTTAGATGCAATGAGAAATACTCCCACGACCATAAGTGCAAGGTTAAGGAGAAGAGGGAACTAATGCTTTTCCTTCTAAATGAGGAAGAGAGCATCGGGGAAGAGGGCACATCAAAGGAAAATAGTGGAGAAATAGTTGAGTTAAAACATTTAGACATTGCTGAAGGGTTTGAGCTCAAAACGATCATGGACCTCTCATCTAAGGGCACCGTGAGGTTGAAAGTGGTGTTGATGGATAATGAAGTGGTGGTGCTTAGGGGTGTTCGTGGTTTGGTTCGGTTTGTTTTGAAGCTAAACCCGCACTAA
mRNA sequence
ATGGCTGAAAGTGTTCTAAGAGATGCTTTTGTAACTAGTTTGGAACCTGCCCTTCAAGCTGAAGTTATTAATAGACACCCACAAACCTTGGAGGAATGTATGAAAGAAGCACAACTAGTAAACGACCCTAACTTAGCTTTGAAGCTTGCGAGAGAAGAGTTGGGGTTGCTGGAACCAAAGAGTAGGGAAGACATTGGCAACAAAGGGTTATGTTTTAGATGCAATGAGAAATACTCCCACGACCATAAGTGCAAGGTTAAGGAGAAGAGGGAACTAATGCTTTTCCTTCTAAATGAGGAAGAGAGCATCGGGGAAGAGGGCACATCAAAGGAAAATAGTGGAGAAATAGTTGAGTTAAAACATTTAGACATTGCTGAAGGGTTTGAGCTCAAAACGATCATGGACCTCTCATCTAAGGGCACCGTGAGGTTGAAAGTGGTGTTGATGGATAATGAAGTGGTGGTGCTTAGGGGTGTTCGTGGTTTGGTTCGGTTTGTTTTGAAGCTAAACCCGCACTAA
Coding sequence (CDS)
ATGGCTGAAAGTGTTCTAAGAGATGCTTTTGTAACTAGTTTGGAACCTGCCCTTCAAGCTGAAGTTATTAATAGACACCCACAAACCTTGGAGGAATGTATGAAAGAAGCACAACTAGTAAACGACCCTAACTTAGCTTTGAAGCTTGCGAGAGAAGAGTTGGGGTTGCTGGAACCAAAGAGTAGGGAAGACATTGGCAACAAAGGGTTATGTTTTAGATGCAATGAGAAATACTCCCACGACCATAAGTGCAAGGTTAAGGAGAAGAGGGAACTAATGCTTTTCCTTCTAAATGAGGAAGAGAGCATCGGGGAAGAGGGCACATCAAAGGAAAATAGTGGAGAAATAGTTGAGTTAAAACATTTAGACATTGCTGAAGGGTTTGAGCTCAAAACGATCATGGACCTCTCATCTAAGGGCACCGTGAGGTTGAAAGTGGTGTTGATGGATAATGAAGTGGTGGTGCTTAGGGGTGTTCGTGGTTTGGTTCGGTTTGTTTTGAAGCTAAACCCGCACTAA
Protein sequence
MAESVLRDAFVTSLEPALQAEVINRHPQTLEECMKEAQLVNDPNLALKLAREELGLLEPKSREDIGNKGLCFRCNEKYSHDHKCKVKEKRELMLFLLNEEESIGEEGTSKENSGEIVELKHLDIAEGFELKTIMDLSSKGTVRLKVVLMDNEVVVLRGVRGLVRFVLKLNPH
Homology
BLAST of IVF0017121 vs. ExPASy TrEMBL
Match:
A0A5D3C4Q7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold83G00130 PE=4 SV=1)
HSP 1 Score: 208.4 bits (529), Expect = 2.4e-50
Identity = 105/106 (99.06%), Postives = 106/106 (100.00%), Query Frame = 0
Query: 67 NKGLCFRCNEKYSHDHKCKVKEKRELMLFLLNEEESIGEEGTSKENSGEIVELKHLDIAE 126
+KGLCFRCNEKYSHDHKCKVKEKRELMLFLLNEEESIGEEGTSKENSGEIVELKHLDIAE
Sbjct: 32 DKGLCFRCNEKYSHDHKCKVKEKRELMLFLLNEEESIGEEGTSKENSGEIVELKHLDIAE 91
Query: 127 GFELKTIMDLSSKGTVRLKVVLMDNEVVVLRGVRGLVRFVLKLNPH 173
GFELKTIMDLSSKGTVRLKVVLMDNEVVVLRGVRGLVRFVLKLNPH
Sbjct: 92 GFELKTIMDLSSKGTVRLKVVLMDNEVVVLRGVRGLVRFVLKLNPH 137
BLAST of IVF0017121 vs. ExPASy TrEMBL
Match:
A0A5A7TEG2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G002020 PE=4 SV=1)
HSP 1 Score: 193.4 bits (490), Expect = 8.1e-46
Identity = 100/106 (94.34%), Postives = 101/106 (95.28%), Query Frame = 0
Query: 67 NKGLCFRCNEKYSHDHKCKVKEKRELMLFLLNEEESIGEEGTSKENSGEIVELKHLDIAE 126
+KGLCFRCNEKYSHDHKCKVKEKRELMLFLLNE EEGTSKENSGEIVELKHLDIAE
Sbjct: 32 DKGLCFRCNEKYSHDHKCKVKEKRELMLFLLNE-----EEGTSKENSGEIVELKHLDIAE 91
Query: 127 GFELKTIMDLSSKGTVRLKVVLMDNEVVVLRGVRGLVRFVLKLNPH 173
GFELKTIMDLSSKGTVRLKVVLMDNEVVVLRGVRGLVRFVLKLNPH
Sbjct: 92 GFELKTIMDLSSKGTVRLKVVLMDNEVVVLRGVRGLVRFVLKLNPH 132
BLAST of IVF0017121 vs. ExPASy TrEMBL
Match:
A0A5D3E1L1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1280G00160 PE=4 SV=1)
HSP 1 Score: 175.6 bits (444), Expect = 1.7e-40
Identity = 108/197 (54.82%), Postives = 121/197 (61.42%), Query Frame = 0
Query: 3 ESVLRDAFVTSLEPALQAEVINRHPQTLEECMKEAQLVNDPNLALKLAREELGLLEPKSR 62
ESVLRDAFV L+PALQAEV+ RHPQTLEECMKEAQLV D NLALKLAREELGL+E KS
Sbjct: 120 ESVLRDAFVIGLKPALQAEVVIRHPQTLEECMKEAQLVIDRNLALKLAREELGLMETKSG 179
Query: 63 EDIGN-------------------------------------------------KGLCFR 122
E GN KGLCFR
Sbjct: 180 ESSGNKNKGGNEKRDSKGIRIPMKQVTILNKGSYQKNEPPIKRLSDAEFRARLDKGLCFR 239
Query: 123 CNEKYSHDHKCKVKEKRELMLFLLNEEESIGEEGTSKENSGEIVELKHLDIAEG--FELK 149
CNEKYSH H+C + K+ELMLF+LNEEES GEEGTS+E +VELK LDIAEG EL+
Sbjct: 240 CNEKYSHGHRCFL-GKKELMLFILNEEESTGEEGTSEEKIEGMVELKQLDIAEGSKVELE 299
BLAST of IVF0017121 vs. ExPASy TrEMBL
Match:
A0A5D3E3K6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G001480 PE=4 SV=1)
HSP 1 Score: 175.6 bits (444), Expect = 1.7e-40
Identity = 119/219 (54.34%), Postives = 131/219 (59.82%), Query Frame = 0
Query: 1 MAESVLRDAFVTSLEPALQAEVINRHPQTLEECMKEAQLVNDPNLALKLAREELGLLEPK 60
MAESVLRDAFVTSLE ALQAEVI+RHPQTLE+CMKEAQLVND NL LKLAREELGLLE K
Sbjct: 141 MAESVLRDAFVTSLELALQAEVISRHPQTLEQCMKEAQLVNDCNLTLKLAREELGLLEHK 200
Query: 61 SREDI------GN-------------------------------------------KGLC 120
S E GN KGL
Sbjct: 201 SGEGTRSKSNGGNDKEAHKKTEFQMKQVTIPIKGSYQKNEPPIKRLSDAEFCARLDKGLY 260
Query: 121 FRCNEKYSHDHKCKVKEKRELMLFLLNEEESIGEEGTSKENSGEIVELKHLDIAEG--FE 169
FRCNEKYSH H+CKVKEKRELMLF+LNEEE E EN E+V LK L++AEG E
Sbjct: 261 FRCNEKYSHGHRCKVKEKRELMLFILNEEEDPPE-----ENREELVRLKQLELAEGAKIE 320
BLAST of IVF0017121 vs. ExPASy TrEMBL
Match:
A0A5A7UQT2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold280G003450 PE=4 SV=1)
HSP 1 Score: 175.6 bits (444), Expect = 1.7e-40
Identity = 119/219 (54.34%), Postives = 131/219 (59.82%), Query Frame = 0
Query: 1 MAESVLRDAFVTSLEPALQAEVINRHPQTLEECMKEAQLVNDPNLALKLAREELGLLEPK 60
MAESVLRDAFVTSLE ALQAEVI+RHPQTLE+CMKEAQLVND NL LKLAREELGLLE K
Sbjct: 289 MAESVLRDAFVTSLELALQAEVISRHPQTLEQCMKEAQLVNDCNLTLKLAREELGLLEHK 348
Query: 61 SREDI------GN-------------------------------------------KGLC 120
S E GN KGL
Sbjct: 349 SGEGTRSKSNGGNDKEAHKKTEFQMKQVTIPIKGSYQKNEPPIKRLSDAEFCARLDKGLY 408
Query: 121 FRCNEKYSHDHKCKVKEKRELMLFLLNEEESIGEEGTSKENSGEIVELKHLDIAEG--FE 169
FRCNEKYSH H+CKVKEKRELMLF+LNEEE E EN E+V LK L++AEG E
Sbjct: 409 FRCNEKYSHGHRCKVKEKRELMLFILNEEEDPPE-----ENREELVRLKQLELAEGAKIE 468
BLAST of IVF0017121 vs. NCBI nr
Match:
TYK05346.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 205 bits (522), Expect = 6.20e-65
Identity = 105/106 (99.06%), Postives = 106/106 (100.00%), Query Frame = 0
Query: 67 NKGLCFRCNEKYSHDHKCKVKEKRELMLFLLNEEESIGEEGTSKENSGEIVELKHLDIAE 126
+KGLCFRCNEKYSHDHKCKVKEKRELMLFLLNEEESIGEEGTSKENSGEIVELKHLDIAE
Sbjct: 32 DKGLCFRCNEKYSHDHKCKVKEKRELMLFLLNEEESIGEEGTSKENSGEIVELKHLDIAE 91
Query: 127 GFELKTIMDLSSKGTVRLKVVLMDNEVVVLRGVRGLVRFVLKLNPH 172
GFELKTIMDLSSKGTVRLKVVLMDNEVVVLRGVRGLVRFVLKLNPH
Sbjct: 92 GFELKTIMDLSSKGTVRLKVVLMDNEVVVLRGVRGLVRFVLKLNPH 137
BLAST of IVF0017121 vs. NCBI nr
Match:
KAA0041824.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 191 bits (484), Expect = 3.19e-59
Identity = 100/106 (94.34%), Postives = 101/106 (95.28%), Query Frame = 0
Query: 67 NKGLCFRCNEKYSHDHKCKVKEKRELMLFLLNEEESIGEEGTSKENSGEIVELKHLDIAE 126
+KGLCFRCNEKYSHDHKCKVKEKRELMLFLLNEEE GTSKENSGEIVELKHLDIAE
Sbjct: 32 DKGLCFRCNEKYSHDHKCKVKEKRELMLFLLNEEE-----GTSKENSGEIVELKHLDIAE 91
Query: 127 GFELKTIMDLSSKGTVRLKVVLMDNEVVVLRGVRGLVRFVLKLNPH 172
GFELKTIMDLSSKGTVRLKVVLMDNEVVVLRGVRGLVRFVLKLNPH
Sbjct: 92 GFELKTIMDLSSKGTVRLKVVLMDNEVVVLRGVRGLVRFVLKLNPH 132
BLAST of IVF0017121 vs. NCBI nr
Match:
KAA0047184.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK29744.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 176 bits (445), Expect = 7.70e-51
Identity = 107/194 (55.15%), Postives = 120/194 (61.86%), Query Frame = 0
Query: 3 ESVLRDAFVTSLEPALQAEVINRHPQTLEECMKEAQLVNDPNLALKLAREELGLLEPKSR 62
ESVLRDAFV L+PALQAEV+ RHPQTLEECMKEAQLV D NLALKLAREELGL+E KS
Sbjct: 120 ESVLRDAFVIGLKPALQAEVVIRHPQTLEECMKEAQLVIDRNLALKLAREELGLMETKSG 179
Query: 63 EDIGNK-------------------------------------------------GLCFR 122
E GNK GLCFR
Sbjct: 180 ESSGNKNKGGNEKRDSKGIRIPMKQVTILNKGSYQKNEPPIKRLSDAEFRARLDKGLCFR 239
Query: 123 CNEKYSHDHKCKVKEKRELMLFLLNEEESIGEEGTSKENSGEIVELKHLDIAEG--FELK 145
CNEKYSH H+C + K+ELMLF+LNEEES GEEGTS+E +VELK LDIAEG EL+
Sbjct: 240 CNEKYSHGHRCFLG-KKELMLFILNEEESTGEEGTSEEKIEGMVELKQLDIAEGSKVELE 299
BLAST of IVF0017121 vs. NCBI nr
Match:
XP_016900785.1 (PREDICTED: uncharacterized protein LOC107991020 [Cucumis melo])
HSP 1 Score: 175 bits (443), Expect = 3.12e-49
Identity = 113/199 (56.78%), Postives = 122/199 (61.31%), Query Frame = 0
Query: 1 MAESVLRDAFVTSLEPALQAEVINRHPQTLEECMKEAQLVNDPNLALKLAREELGLLEPK 60
MAESVLRDAFVTSLE ALQAEVI+RHPQTLE+CMKEAQLVND NL LKLAREELGLLE K
Sbjct: 43 MAESVLRDAFVTSLELALQAEVISRHPQTLEQCMKEAQLVNDCNLTLKLAREELGLLEHK 102
Query: 61 SREDI------GN-------------------------------------------KGLC 120
S E GN KGL
Sbjct: 103 SGEGTRSKSNGGNDKEAHKKTEFQMKQVTIPIKGSYQKNEPPIKRLSDAEFCARLDKGLY 162
Query: 121 FRCNEKYSHDHKCKVKEKRELMLFLLNEEESIGEEGTSKENSGEIVELKHLDIAEG--FE 148
FRCNEKYSH H+CKVKEKRELMLF+LNEEE EE N E+V LK L++AEG E
Sbjct: 163 FRCNEKYSHGHRCKVKEKRELMLFILNEEEDPPEE-----NREELVRLKQLELAEGAKIE 222
BLAST of IVF0017121 vs. NCBI nr
Match:
TYK30161.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 175 bits (443), Expect = 1.85e-48
Identity = 113/199 (56.78%), Postives = 122/199 (61.31%), Query Frame = 0
Query: 1 MAESVLRDAFVTSLEPALQAEVINRHPQTLEECMKEAQLVNDPNLALKLAREELGLLEPK 60
MAESVLRDAFVTSLE ALQAEVI+RHPQTLE+CMKEAQLVND NL LKLAREELGLLE K
Sbjct: 141 MAESVLRDAFVTSLELALQAEVISRHPQTLEQCMKEAQLVNDCNLTLKLAREELGLLEHK 200
Query: 61 SREDI------GN-------------------------------------------KGLC 120
S E GN KGL
Sbjct: 201 SGEGTRSKSNGGNDKEAHKKTEFQMKQVTIPIKGSYQKNEPPIKRLSDAEFCARLDKGLY 260
Query: 121 FRCNEKYSHDHKCKVKEKRELMLFLLNEEESIGEEGTSKENSGEIVELKHLDIAEG--FE 148
FRCNEKYSH H+CKVKEKRELMLF+LNEEE EE N E+V LK L++AEG E
Sbjct: 261 FRCNEKYSHGHRCKVKEKRELMLFILNEEEDPPEE-----NREELVRLKQLELAEGAKIE 320
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3C4Q7 | 2.4e-50 | 99.06 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7TEG2 | 8.1e-46 | 94.34 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5D3E1L1 | 1.7e-40 | 54.82 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5D3E3K6 | 1.7e-40 | 54.34 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7UQT2 | 1.7e-40 | 54.34 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
Match Name | E-value | Identity | Description | |
TYK05346.1 | 6.20e-65 | 99.06 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
KAA0041824.1 | 3.19e-59 | 94.34 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
KAA0047184.1 | 7.70e-51 | 55.15 | retrotransposon protein [Cucumis melo var. makuwa] >TYK29744.1 retrotransposon p... | [more] |
XP_016900785.1 | 3.12e-49 | 56.78 | PREDICTED: uncharacterized protein LOC107991020 [Cucumis melo] | [more] |
TYK30161.1 | 1.85e-48 | 56.78 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |