IVF0017109 (gene) Melon (IVF77) v1

Overview
NameIVF0017109
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionHistidine-rich glycoprotein-like
Locationchr05: 20897460 .. 20897630 (-)
RNA-Seq ExpressionIVF0017109
SyntenyIVF0017109
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTTAAAGCTATATCATCGTCATCTTAAAGAGAGGGAGACTAAACTGCACCATCATCGTCATCTTGGAGAGAGGGAGGCAAAGTTGCACTATCGACATCATCTTAAAGAGGCAAAGGTGGAGTTGTACCATCGTCGTCCTTTCAAGGCTACAACATATTGGAGATGA

mRNA sequence

ATGGAGTTAAAGCTATATCATCGTCATCTTAAAGAGAGGGAGACTAAACTGCACCATCATCGTCATCTTGGAGAGAGGGAGGCAAAGTTGCACTATCGACATCATCTTAAAGAGGCAAAGGTGGAGTTGTACCATCGTCGTCCTTTCAAGGCTACAACATATTGGAGATGA

Coding sequence (CDS)

ATGGAGTTAAAGCTATATCATCGTCATCTTAAAGAGAGGGAGACTAAACTGCACCATCATCGTCATCTTGGAGAGAGGGAGGCAAAGTTGCACTATCGACATCATCTTAAAGAGGCAAAGGTGGAGTTGTACCATCGTCGTCCTTTCAAGGCTACAACATATTGGAGATGA

Protein sequence

MELKLYHRHLKERETKLHHHRHLGEREAKLHYRHHLKEAKVELYHRRPFKATTYWR
Homology
BLAST of IVF0017109 vs. ExPASy TrEMBL
Match: A0A5D3CD94 (Histidine-rich glycoprotein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold127G001090 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.2e-09
Identity = 38/55 (69.09%), Postives = 42/55 (76.36%), Query Frame = 0

Query: 2   ELKLYHRHLKERETKLHHHRHLGEREAKLHYRHHLKEAKVELYHRRPFKATTYWR 57
           E KLY  HL+E E KLHH+RHL EREAKLH+R HL EAK EL H RP +ATT WR
Sbjct: 222 EEKLYRCHLREEEAKLHHYRHLREREAKLHHRRHLVEAKSELRHHRPLRATTCWR 276

BLAST of IVF0017109 vs. ExPASy TrEMBL
Match: A0A5D3C8P6 (Histidine-rich glycoprotein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold105G00230 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 7.2e-04
Identity = 29/46 (63.04%), Postives = 36/46 (78.26%), Query Frame = 0

Query: 2   ELKLYH-RHLKERETKLHHHRHLGEREAKLHYRHHLKEAKVELYHR 47
           +++LYH  H  ERE  LHHHRHLGERE +LH+  HL EA+VEL+HR
Sbjct: 407 KVELYHCHHPLEREAILHHHRHLGEREVELHHHCHLGEAEVELFHR 452

BLAST of IVF0017109 vs. ExPASy TrEMBL
Match: A0A5A7U6T5 (Histidine-rich glycoprotein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13G00350 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 7.2e-04
Identity = 29/46 (63.04%), Postives = 36/46 (78.26%), Query Frame = 0

Query: 2   ELKLYH-RHLKERETKLHHHRHLGEREAKLHYRHHLKEAKVELYHR 47
           +++LYH  H  ERE  LHHHRHLGERE +LH+  HL EA+VEL+HR
Sbjct: 104 KVELYHCHHPLEREAILHHHRHLGEREVELHHHCHLGEAEVELFHR 149

BLAST of IVF0017109 vs. ExPASy TrEMBL
Match: A0A1S3B5B4 (histidine-rich glycoprotein-like OS=Cucumis melo OX=3656 GN=LOC103485951 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 7.2e-04
Identity = 29/46 (63.04%), Postives = 36/46 (78.26%), Query Frame = 0

Query: 2   ELKLYH-RHLKERETKLHHHRHLGEREAKLHYRHHLKEAKVELYHR 47
           +++LYH  H  ERE  LHHHRHLGERE +LH+  HL EA+VEL+HR
Sbjct: 122 KVELYHCHHPLEREAILHHHRHLGEREVELHHHCHLGEAEVELFHR 167

BLAST of IVF0017109 vs. NCBI nr
Match: TYK09811.1 (histidine-rich glycoprotein-like [Cucumis melo var. makuwa])

HSP 1 Score: 70.5 bits (171), Expect = 1.26e-12
Identity = 38/55 (69.09%), Postives = 42/55 (76.36%), Query Frame = 0

Query: 2   ELKLYHRHLKERETKLHHHRHLGEREAKLHYRHHLKEAKVELYHRRPFKATTYWR 56
           E KLY  HL+E E KLHH+RHL EREAKLH+R HL EAK EL H RP +ATT WR
Sbjct: 222 EEKLYRCHLREEEAKLHHYRHLREREAKLHHRRHLVEAKSELRHHRPLRATTCWR 276

BLAST of IVF0017109 vs. NCBI nr
Match: KAA0049886.1 (histidine-rich glycoprotein-like [Cucumis melo var. makuwa])

HSP 1 Score: 51.2 bits (121), Expect = 1.31e-05
Identity = 29/46 (63.04%), Postives = 36/46 (78.26%), Query Frame = 0

Query: 2   ELKLYH-RHLKERETKLHHHRHLGEREAKLHYRHHLKEAKVELYHR 46
           +++LYH  H  ERE  LHHHRHLGERE +LH+  HL EA+VEL+HR
Sbjct: 104 KVELYHCHHPLEREAILHHHRHLGEREVELHHHCHLGEAEVELFHR 149

BLAST of IVF0017109 vs. NCBI nr
Match: XP_008441951.1 (PREDICTED: histidine-rich glycoprotein-like [Cucumis melo])

HSP 1 Score: 51.2 bits (121), Expect = 1.39e-05
Identity = 29/46 (63.04%), Postives = 36/46 (78.26%), Query Frame = 0

Query: 2   ELKLYH-RHLKERETKLHHHRHLGEREAKLHYRHHLKEAKVELYHR 46
           +++LYH  H  ERE  LHHHRHLGERE +LH+  HL EA+VEL+HR
Sbjct: 122 KVELYHCHHPLEREAILHHHRHLGEREVELHHHCHLGEAEVELFHR 167

BLAST of IVF0017109 vs. NCBI nr
Match: TYK07624.1 (histidine-rich glycoprotein-like [Cucumis melo var. makuwa])

HSP 1 Score: 51.2 bits (121), Expect = 1.57e-05
Identity = 29/46 (63.04%), Postives = 36/46 (78.26%), Query Frame = 0

Query: 2   ELKLYH-RHLKERETKLHHHRHLGEREAKLHYRHHLKEAKVELYHR 46
           +++LYH  H  ERE  LHHHRHLGERE +LH+  HL EA+VEL+HR
Sbjct: 407 KVELYHCHHPLEREAILHHHRHLGEREVELHHHCHLGEAEVELFHR 452

BLAST of IVF0017109 vs. NCBI nr
Match: KAA0031633.1 (hypothetical protein E6C27_scaffold139G004020 [Cucumis melo var. makuwa])

HSP 1 Score: 46.6 bits (109), Expect = 1.21e-04
Identity = 24/31 (77.42%), Postives = 26/31 (83.87%), Query Frame = 0

Query: 24 GEREAKLHYRHHLKEAKVELYHRRPFKATTY 54
          GE EAKL++R  L EAKVELYHRRP KATTY
Sbjct: 67 GEMEAKLYHRRLLGEAKVELYHRRPLKATTY 97

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CD941.2e-0969.09Histidine-rich glycoprotein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
A0A5D3C8P67.2e-0463.04Histidine-rich glycoprotein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
A0A5A7U6T57.2e-0463.04Histidine-rich glycoprotein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27... [more]
A0A1S3B5B47.2e-0463.04histidine-rich glycoprotein-like OS=Cucumis melo OX=3656 GN=LOC103485951 PE=4 SV... [more]
Match NameE-valueIdentityDescription
TYK09811.11.26e-1269.09histidine-rich glycoprotein-like [Cucumis melo var. makuwa][more]
KAA0049886.11.31e-0563.04histidine-rich glycoprotein-like [Cucumis melo var. makuwa][more]
XP_008441951.11.39e-0563.04PREDICTED: histidine-rich glycoprotein-like [Cucumis melo][more]
TYK07624.11.57e-0563.04histidine-rich glycoprotein-like [Cucumis melo var. makuwa][more]
KAA0031633.11.21e-0477.42hypothetical protein E6C27_scaffold139G004020 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0017109.1IVF0017109.1mRNA