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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGTCTGCGAGCGGTTGGATTGTTCGAGTGATTCGACGGCGGGAAATCAAATGCGAGCGGTGGATGGCGGAGAGAGAAAACGACGATGATCTGTTGGATTGTTCGAGTGATTCGGCGGCCGAAAATCGTATACGGCTGAGGTCTGAGGGCTGGGAGTGGTGGATGGCAGAGGGAGACGACGACTGA mRNA sequence ATGTCTGCGAGCGGTTGGATTGTTCGAGTGATTCGACGGCGGGAAATCAAATGCGAGCGGTGGATGGCGGAGAGAGAAAACGACGATGATCTGTTGGATTGTTCGAGTGATTCGGCGGCCGAAAATCGTATACGGCTGAGGTCTGAGGGCTGGGAGTGGTGGATGGCAGAGGGAGACGACGACTGA Coding sequence (CDS) ATGTCTGCGAGCGGTTGGATTGTTCGAGTGATTCGACGGCGGGAAATCAAATGCGAGCGGTGGATGGCGGAGAGAGAAAACGACGATGATCTGTTGGATTGTTCGAGTGATTCGGCGGCCGAAAATCGTATACGGCTGAGGTCTGAGGGCTGGGAGTGGTGGATGGCAGAGGGAGACGACGACTGA Protein sequence MSASGWIVRVIRRREIKCERWMAERENDDDLLDCSSDSAAENRIRLRSEGWEWWMAEGDDD
Homology
BLAST of IVF0017076 vs. ExPASy TrEMBL
Match: A0A5A7SNB3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G005110 PE=4 SV=1) HSP 1 Score: 86.3 bits (212), Expect = 4.9e-14 Identity = 47/72 (65.28%), Postives = 47/72 (65.28%), Query Frame = 0 Query: 1 MSASGWIVRVIRRREIKCERWMAERENDDDLLDCSSDSAAENRIRLRS-----------E 60 MSASGWIVRVIRRREIKCERWMAE ENDDDL R RLRS E Sbjct: 1 MSASGWIVRVIRRREIKCERWMAEGENDDDL----------GRRRLRSGSGGWRRETTVE 60
Query: 61 GWEWWMAEGDDD 62 WEWWMAEGDDD Sbjct: 61 VWEWWMAEGDDD 62
BLAST of IVF0017076 vs. NCBI nr
Match: KAA0031723.1 (retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 86.3 bits (212), Expect = 4.25e-19 Identity = 47/72 (65.28%), Postives = 47/72 (65.28%), Query Frame = 0 Query: 1 MSASGWIVRVIRRREIKCERWMAERENDDDLLDCSSDSAAENRIRLRS-----------E 60 MSASGWIVRVIRRREIKCERWMAE ENDDDL R RLRS E Sbjct: 1 MSASGWIVRVIRRREIKCERWMAEGENDDDL----------GRRRLRSGSGGWRRETTVE 60
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7SNB3 | 4.9e-14 | 65.28 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
Match Name | E-value | Identity | Description | |
KAA0031723.1 | 4.25e-19 | 65.28 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
Relationships
The following mRNA feature(s) are a part of this gene:
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