IVF0017057 (gene) Melon (IVF77) v1

Overview


Name	IVF0017057
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotransposon protein
Location	chr04: 4137956 .. 4138395 (+)
RNA-Seq Expression	IVF0017057
Synteny	IVF0017057

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTAATGACGACGTTCCACTCGATGATTCACATGATCAAGACATCCCGATGATGTATAGCCAAGGAGTGCATATGTCACCAGATGAGATGTTTGGAATACGTGCAGCTCAAGCAAGTGAGAGAAAAAATTGTTCAAGTGGAAGTAAGAGGAAACAAGGTAGTGAACATTATGAAACGGTAGAGGTGATCAGGAGTGTAATAGAATTTGGAAATGATCAATTAAAGGCAATTGCAAATTGGCCAAAAGAGAAGCGTGCAACAGAGGTCGAATTGCGTGCTGAAGTTGTGAAACAGCTGCAAGATATCCCTGAACTACAAAGCCAAGATAGGCAAAGCTTATGCAAATCCTATTCCGTAGTGTGGAGGCCATTGAGGGATCCTTGTCGATTCCAACAGAACTTAAATCGGAGTATTGCAATATTCTCTTGCAAAATTAG

mRNA sequence

ATGTTTAATGACGACGTTCCACTCGATGATTCACATGATCAAGACATCCCGATGATGTATAGCCAAGGAGTGCATATGTCACCAGATGAGATGTTTGGAATACGTGCAGCTCAAGCAAGTGAGAGAAAAAATTGTTCAAGTGGAAGTAAGAGGAAACAAGGTAGTGAACATTATGAAACGGTAGAGGTGATCAGGAGTGTAATAGAATTTGGAAATGATCAATTAAAGGCAATTGCAAATTGGCCAAAAGAGAAGCGTGCAACAGAGGTCGAATTGCGTGCTGAAGTTGCAAAGCTTATGCAAATCCTATTCCGTAGTGTGGAGGCCATTGAGGGATCCTTGTCGATTCCAACAGAACTTAAATCGGAGTATTGCAATATTCTCTTGCAAAATTAG

Coding sequence (CDS)

ATGTTTAATGACGACGTTCCACTCGATGATTCACATGATCAAGACATCCCGATGATGTATAGCCAAGGAGTGCATATGTCACCAGATGAGATGTTTGGAATACGTGCAGCTCAAGCAAGTGAGAGAAAAAATTGTTCAAGTGGAAGTAAGAGGAAACAAGGTAGTGAACATTATGAAACGGTAGAGGTGATCAGGAGTGTAATAGAATTTGGAAATGATCAATTAAAGGCAATTGCAAATTGGCCAAAAGAGAAGCGTGCAACAGAGGTCGAATTGCGTGCTGAAGTTGCAAAGCTTATGCAAATCCTATTCCGTAGTGTGGAGGCCATTGAGGGATCCTTGTCGATTCCAACAGAACTTAAATCGGAGTATTGCAATATTCTCTTGCAAAATTAG

Protein sequence

MFNDDVPLDDSHDQDIPMMYSQGVHMSPDEMFGIRAAQASERKNCSSGSKRKQGSEHYETVEVIRSVIEFGNDQLKAIANWPKEKRATEVELRAEVAKLMQILFRSVEAIEGSLSIPTELKSEYCNILLQN

Homology

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BLAST of IVF0017057 vs. ExPASy TrEMBL
Match: A0A5A7SQU2 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold472G00070 PE=3 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 2.7e-57
Identity = 122/146 (83.56%), Postives = 125/146 (85.62%), Query Frame = 0


Query: 1   MFNDDVPLDDSHDQDIPMMYSQGVHMSPDEMFGIRAAQASERKNCSSGSKRKQGSEHYET 60
           MFN DVPLDDSHDQDIPMMYSQGVHMSPDEMFGIRA QASERKNCSSGSKRKQGS+HYET
Sbjct: 352 MFNGDVPLDDSHDQDIPMMYSQGVHMSPDEMFGIRAGQASERKNCSSGSKRKQGSKHYET 411

Query: 61  VEVIRSVIEFGNDQLKAIANWPKEKRATEVELRAEV---------------AKLMQILFR 120
           VEVI+S IEFGNDQLKAIANWPKEKRATEVELRAEV               AKL+QILFR
Sbjct: 412 VEVIKSAIEFGNDQLKAIANWPKEKRATEVELRAEVMKQLQDIPELQSRDRAKLIQILFR 471

Query: 121 SVEAIEGSLSIPTELKSEYCNILLQN 132
           SVEAIEG LSIPTE K EYCNILLQN
Sbjct: 472 SVEAIEGFLSIPTERKLEYCNILLQN 497

[Close]

BLAST of IVF0017057 vs. ExPASy TrEMBL
Match: A0A5A7U0H7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G002060 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 5.7e-52
Identity = 112/146 (76.71%), Postives = 122/146 (83.56%), Query Frame = 0


Query: 1   MFNDDVPLDDSHDQDIPMMYSQGVHMSPDEMFGIRAAQASERKNCSSGSKRKQGSEHYET 60
           MFND +PL DSHD+DIP MYSQGVHMSPDEMFGIRA QASER+NCSS SKRK+GSE YET
Sbjct: 159 MFNDTIPLGDSHDEDIPTMYSQGVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYET 218

Query: 61  VEVIRSVIEFGNDQLKAIANWPKEKRATEVELRAEV---------------AKLMQILFR 120
           VEVIRSV+EFGN+QLKAIA+WPKEKRA EVE+RA+V               AKLMQILFR
Sbjct: 219 VEVIRSVMEFGNEQLKAIADWPKEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKLMQILFR 278

Query: 121 SVEAIEGSLSIPTELKSEYCNILLQN 132
           S+EAIEG LSIPTELK EYCNILLQN
Sbjct: 279 SLEAIEGFLSIPTELKLEYCNILLQN 304

[Close]

BLAST of IVF0017057 vs. ExPASy TrEMBL
Match: A0A1S3B4L3 (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 5.7e-52
Identity = 112/146 (76.71%), Postives = 122/146 (83.56%), Query Frame = 0


Query: 1   MFNDDVPLDDSHDQDIPMMYSQGVHMSPDEMFGIRAAQASERKNCSSGSKRKQGSEHYET 60
           MFND +PL DSHD+DIP MYSQGVHMSPDEMFGIRA QASER+NCSS SKRK+GSE YET
Sbjct: 159 MFNDTIPLGDSHDEDIPTMYSQGVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYET 218

Query: 61  VEVIRSVIEFGNDQLKAIANWPKEKRATEVELRAEV---------------AKLMQILFR 120
           VEVIRSV+EFGN+QLKAIA+WPKEKRA EVE+RA+V               AKLMQILFR
Sbjct: 219 VEVIRSVMEFGNEQLKAIADWPKEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKLMQILFR 278

Query: 121 SVEAIEGSLSIPTELKSEYCNILLQN 132
           S+EAIEG LSIPTELK EYCNILLQN
Sbjct: 279 SLEAIEGFLSIPTELKLEYCNILLQN 304

[Close]

BLAST of IVF0017057 vs. ExPASy TrEMBL
Match: A0A5A7V8A4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold556G00090 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 5.6e-47
Identity = 98/101 (97.03%), Postives = 99/101 (98.02%), Query Frame = 0


Query: 1   MFNDDVPLDDSHDQDIPMMYSQGVHMSPDEMFGIRAAQASERKNCSSGSKRKQGSEHYET 60
           MFNDDVPLDDSHDQDIPMMYSQGVHMSPDEMFGIRAAQASERKNCSSGSKRKQGSEHYET
Sbjct: 1   MFNDDVPLDDSHDQDIPMMYSQGVHMSPDEMFGIRAAQASERKNCSSGSKRKQGSEHYET 60

Query: 61  VEVIRSVIEFGNDQLKAIANWPKEKRATEVELRAEVAKLMQ 102
           VEVIRSVIEFGNDQLKAIANWPKEKRATEVELRAEV K +Q
Sbjct: 61  VEVIRSVIEFGNDQLKAIANWPKEKRATEVELRAEVVKQLQ 101

[Close]

BLAST of IVF0017057 vs. ExPASy TrEMBL
Match: A0A5D3BZU3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G00280 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 1.2e-46
Identity = 106/146 (72.60%), Postives = 115/146 (78.77%), Query Frame = 0


Query: 1   MFNDDVPLDDSHDQDIPMMYSQGVHMSPDEMFGIRAAQASERKNCSSGSKRKQGSEHYET 60
           MFND VPL DSH+QDI  +YSQGVHMS DE+FGIRA QASER+N SSGSKRK+GS+HYE 
Sbjct: 116 MFNDGVPLGDSHNQDILTIYSQGVHMSLDEIFGIRAGQASERRNYSSGSKRKRGSKHYEM 175

Query: 61  VEVIRSVIEFGNDQLKAIANWPKEKRATEVELRAEV---------------AKLMQILFR 120
           VEVI S  EFGNDQLK I +WPKEKRATEVELR EV               AKLMQILFR
Sbjct: 176 VEVISSATEFGNDQLKTITDWPKEKRATEVELRTEVVKQLQDIPQLRSQDRAKLMQILFR 235

Query: 121 SVEAIEGSLSIPTELKSEYCNILLQN 132
           SVEAIEG LSIPT+LK EYCNILL+N
Sbjct: 236 SVEAIEGFLSIPTKLKLEYCNILLEN 261

[Close]

BLAST of IVF0017057 vs. NCBI nr
Match: KAA0033290.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK14818.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 233 bits (593), Expect = 8.50e-72
Identity = 122/146 (83.56%), Postives = 125/146 (85.62%), Query Frame = 0


Query: 1   MFNDDVPLDDSHDQDIPMMYSQGVHMSPDEMFGIRAAQASERKNCSSGSKRKQGSEHYET 60
           MFN DVPLDDSHDQDIPMMYSQGVHMSPDEMFGIRA QASERKNCSSGSKRKQGS+HYET
Sbjct: 352 MFNGDVPLDDSHDQDIPMMYSQGVHMSPDEMFGIRAGQASERKNCSSGSKRKQGSKHYET 411

Query: 61  VEVIRSVIEFGNDQLKAIANWPKEKRATEVELRAEV---------------AKLMQILFR 120
           VEVI+S IEFGNDQLKAIANWPKEKRATEVELRAEV               AKL+QILFR
Sbjct: 412 VEVIKSAIEFGNDQLKAIANWPKEKRATEVELRAEVMKQLQDIPELQSRDRAKLIQILFR 471

Query: 121 SVEAIEGSLSIPTELKSEYCNILLQN 131
           SVEAIEG LSIPTE K EYCNILLQN
Sbjct: 472 SVEAIEGFLSIPTERKLEYCNILLQN 497

[Close]

BLAST of IVF0017057 vs. NCBI nr
Match: XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK08388.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 215 bits (547), Expect = 4.12e-67
Identity = 112/146 (76.71%), Postives = 122/146 (83.56%), Query Frame = 0


Query: 1   MFNDDVPLDDSHDQDIPMMYSQGVHMSPDEMFGIRAAQASERKNCSSGSKRKQGSEHYET 60
           MFND +PL DSHD+DIP MYSQGVHMSPDEMFGIRA QASER+NCSS SKRK+GSE YET
Sbjct: 159 MFNDTIPLGDSHDEDIPTMYSQGVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYET 218

Query: 61  VEVIRSVIEFGNDQLKAIANWPKEKRATEVELRAEV---------------AKLMQILFR 120
           VEVIRSV+EFGN+QLKAIA+WPKEKRA EVE+RA+V               AKLMQILFR
Sbjct: 219 VEVIRSVMEFGNEQLKAIADWPKEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKLMQILFR 278

Query: 121 SVEAIEGSLSIPTELKSEYCNILLQN 131
           S+EAIEG LSIPTELK EYCNILLQN
Sbjct: 279 SLEAIEGFLSIPTELKLEYCNILLQN 304

[Close]

BLAST of IVF0017057 vs. NCBI nr
Match: KAA0063227.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK13477.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 199 bits (505), Expect = 6.89e-63
Identity = 98/101 (97.03%), Postives = 99/101 (98.02%), Query Frame = 0


Query: 1   MFNDDVPLDDSHDQDIPMMYSQGVHMSPDEMFGIRAAQASERKNCSSGSKRKQGSEHYET 60
           MFNDDVPLDDSHDQDIPMMYSQGVHMSPDEMFGIRAAQASERKNCSSGSKRKQGSEHYET
Sbjct: 1   MFNDDVPLDDSHDQDIPMMYSQGVHMSPDEMFGIRAAQASERKNCSSGSKRKQGSEHYET 60

Query: 61  VEVIRSVIEFGNDQLKAIANWPKEKRATEVELRAEVAKLMQ 101
           VEVIRSVIEFGNDQLKAIANWPKEKRATEVELRAEV K +Q
Sbjct: 61  VEVIRSVIEFGNDQLKAIANWPKEKRATEVELRAEVVKQLQ 101

[Close]

BLAST of IVF0017057 vs. NCBI nr
Match: KAA0031678.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK04432.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 197 bits (501), Expect = 1.05e-60
Identity = 106/146 (72.60%), Postives = 115/146 (78.77%), Query Frame = 0


Query: 1   MFNDDVPLDDSHDQDIPMMYSQGVHMSPDEMFGIRAAQASERKNCSSGSKRKQGSEHYET 60
           MFND VPL DSH+QDI  +YSQGVHMS DE+FGIRA QASER+N SSGSKRK+GS+HYE 
Sbjct: 116 MFNDGVPLGDSHNQDILTIYSQGVHMSLDEIFGIRAGQASERRNYSSGSKRKRGSKHYEM 175

Query: 61  VEVIRSVIEFGNDQLKAIANWPKEKRATEVELRAEV---------------AKLMQILFR 120
           VEVI S  EFGNDQLK I +WPKEKRATEVELR EV               AKLMQILFR
Sbjct: 176 VEVISSATEFGNDQLKTITDWPKEKRATEVELRTEVVKQLQDIPQLRSQDRAKLMQILFR 235

Query: 121 SVEAIEGSLSIPTELKSEYCNILLQN 131
           SVEAIEG LSIPT+LK EYCNILL+N
Sbjct: 236 SVEAIEGFLSIPTKLKLEYCNILLEN 261

[Close]

BLAST of IVF0017057 vs. NCBI nr
Match: KAA0042340.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK15465.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 191 bits (484), Expect = 7.16e-59
Identity = 102/146 (69.86%), Postives = 113/146 (77.40%), Query Frame = 0


Query: 1   MFNDDVPLDDSHDQDIPMMYSQGVHMSPDEMFGIRAAQASERKNCSSGSKRKQGSEHYET 60
           MFND VPL DSH +DIP MYSQGV MS DEMFG RA QASER+NCSS SKRKQGS+HYET
Sbjct: 58  MFNDGVPLGDSHHEDIPTMYSQGVLMSLDEMFGTRAGQASERRNCSSRSKRKQGSQHYET 117

Query: 61  VEVIRSVIEFGNDQLKAIANWPKEKRATEVELRAEVAK---------------LMQILFR 120
           VEVIRS ++FGNDQLKAIA+W KEKRA +VELRA V K               ++QILF 
Sbjct: 118 VEVIRSAMKFGNDQLKAIADWLKEKRAMKVELRALVVKQLQDIPKLQNRDRPKIIQILFH 177

Query: 121 SVEAIEGSLSIPTELKSEYCNILLQN 131
           SVE IEG LSIPTELK EYCN+LL+N
Sbjct: 178 SVEGIEGFLSIPTELKLEYCNVLLEN 203

The following BLAST results are available for this feature:

BLAST of IVF0017057 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0017057 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SQU2	2.7e-57	83.56	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5A7U0H7	5.7e-52	76.71	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B4L3	5.7e-52	76.71	uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=...	[more]
A0A5A7V8A4	5.6e-47	97.03	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BZU3	1.2e-46	72.60	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of IVF0017057 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0033290.1	8.50e-72	83.56	putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK14818.1 putative nucleas...	[more]
XP_008441954.1	4.12e-67	76.71	PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 ret...	[more]
KAA0063227.1	6.89e-63	97.03	retrotransposon protein [Cucumis melo var. makuwa] >TYK13477.1 retrotransposon p...	[more]
KAA0031678.1	1.05e-60	72.60	retrotransposon protein [Cucumis melo var. makuwa] >TYK04432.1 retrotransposon p...	[more]
KAA0042340.1	7.16e-59	69.86	retrotransposon protein [Cucumis melo var. makuwa] >TYK15465.1 retrotransposon p...	[more]

BLAST of IVF0017057 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0017057.1	IVF0017057.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding