IVF0017055 (gene) Melon (IVF77) v1

Overview


Name	IVF0017055
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	histone deacetylase complex subunit SAP18-like
Location	chr06: 24456210 .. 24457498 (+)
RNA-Seq Expression	IVF0017055
Synteny	IVF0017055

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACAAGAGAAGCAGAGATGAGAAGACGAGCGGAGCTGCAGCTGCTCCGACGCAAGGGAGACCGTCAGGGCGGCCACTCCCTCCACCGTCTCAGACCAAAGCTCCGCCGCCGAATCCTCGTCCTCGTTTCGAACCCGTCGACCGCGAAAAGGTTTCTCTTAGGGCTTCCTGCTTCCTCTCCTATTTTTATTTACATCACTCAGATAAGTTTTTGGTTTCTGAAATCTAGGTTCGTTATTTCCACTAACACTTCTCTTCTTTTCGTTTCTTGCATTCAAGACTTGCCCTTTGTTGCTTCGCGTTTTTACTAAGGTATGTTTGAATTCATCGAGAAGCTTTCTTGTTAAATTTAATCTTTGTTCTTCTGAAAATTGAGATAATGGAGTTATCTGTTTGACATTATTGACTTGCCATTACCTTTGATGATACTTCGTCGTTAATCAGTATGGAGGTTTTCTTGTTGTCCCCATGTTTTTTTTTTCCTGATTGGTGCAGTTGGGAGAACTTTGATATAGAATTGAGTGGGGTTCATCTTTCCATGTAGTTTCATCTTATTTTATTAGTATACTGCATGCAAAATGTGCTTCATTTACATATTTTTTTCAGGTTGGAGGTCATCATACCGATGAGGATTTTGCAATTAGGGGTAAGGAACCCAAAGATGAGGTTCAGATTTATACATGGAAAGATGCAACACTCCGGGAGCTGACCGATCTAGTATGCTGAAAACCTACATTATTTCGTTTCTTCTTCTAGTGTTTTTCTACCTATTCTTGCTGCTGCTGTGTACTGTATTTGACAAATGAACATCTAATTTTAGGTTAAGGAGGTTGCTCCAGAGGCTAGAAGAAGAAATGCGAAGCTTTCTTTTGCTTTTGTTTATCCCGACAAGCGTGGTCGATTTGTTTTAAAACAGGTTAGTGAATGTTTACAAAAACATCACCTGCAACTGCAATGGAATTTAAATTATACATTCTCATTTACAGTTGTACTAAACGATATGCTAGTTGTTTACTTCTTAAATGCACTACTTGTTTGGATAAATTGTTGTCATTTTCTTAATATGAAAACCGATATGCTCATTTTTAAGGTGGGGATGACACATTCTTATGGAAATGGGAGGAGATTAGATGATAGCAAGGCATTGGGTGAATTGGACTTCCAGGTAAAATTAGGGCTTATGAATTAAATTGTTTGAAAGTTTATGAGGAAACTAATATATCCTCTGAATCTGTTTTAACTTTAAAAATGTAGATTGGAGACTATTTGGACGTTGCAATCCTGTAG

mRNA sequence

ATGGACAAGAGAAGCAGAGATGAGAAGACGAGCGGAGCTGCAGCTGCTCCGACGCAAGGGAGACCGTCAGGGCGGCCACTCCCTCCACCGTCTCAGACCAAAGCTCCGCCGCCGAATCCTCGTCCTCGTTTCGAACCCGTCGACCGCGAAAAGACTTGCCCTTTGTTGCTTCGCGTTTTTACTAAGGTTGGAGGTCATCATACCGATGAGGATTTTGCAATTAGGGGTAAGGAACCCAAAGATGAGGTTCAGATTTATACATGGAAAGATGCAACACTCCGGGAGCTGACCGATCTAGTTAAGGAGGTTGCTCCAGAGGCTAGAAGAAGAAATGCGAAGCTTTCTTTTGCTTTTGTTTATCCCGACAAGCGTGGTCGATTTGTTTTAAAACAGGTGGGGATGACACATTCTTATGGAAATGGGAGGAGATTAGATGATAGCAAGGCATTGGGTGAATTGGACTTCCAGATTGGAGACTATTTGGACGTTGCAATCCTGTAG

Coding sequence (CDS)

ATGGACAAGAGAAGCAGAGATGAGAAGACGAGCGGAGCTGCAGCTGCTCCGACGCAAGGGAGACCGTCAGGGCGGCCACTCCCTCCACCGTCTCAGACCAAAGCTCCGCCGCCGAATCCTCGTCCTCGTTTCGAACCCGTCGACCGCGAAAAGACTTGCCCTTTGTTGCTTCGCGTTTTTACTAAGGTTGGAGGTCATCATACCGATGAGGATTTTGCAATTAGGGGTAAGGAACCCAAAGATGAGGTTCAGATTTATACATGGAAAGATGCAACACTCCGGGAGCTGACCGATCTAGTTAAGGAGGTTGCTCCAGAGGCTAGAAGAAGAAATGCGAAGCTTTCTTTTGCTTTTGTTTATCCCGACAAGCGTGGTCGATTTGTTTTAAAACAGGTGGGGATGACACATTCTTATGGAAATGGGAGGAGATTAGATGATAGCAAGGCATTGGGTGAATTGGACTTCCAGATTGGAGACTATTTGGACGTTGCAATCCTGTAG

Protein sequence

MDKRSRDEKTSGAAAAPTQGRPSGRPLPPPSQTKAPPPNPRPRFEPVDREKTCPLLLRVFTKVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL

Homology

[Close]

BLAST of IVF0017055 vs. ExPASy Swiss-Prot
Match: O64644 (Histone deacetylase complex subunit SAP18 OS=Arabidopsis thaliana OX=3702 GN=At2g45640 PE=1 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 7.0e-52
Identity = 107/153 (69.93%), Postives = 124/153 (81.05%), Query Frame = 0


Query: 13  AAAAPTQGRPSGRPLPPPSQTKAPPPNPRPRFEPVDREKTCPLLLRVFTKVGGHHTDEDF 72
           A AA  QG   GRPLPPP +     P PRP+ EPVDREKTCPLLLRVFTK GGHHT ED+
Sbjct: 2   AEAARRQG--GGRPLPPPPRGVNQQP-PRPKPEPVDREKTCPLLLRVFTKSGGHHTSEDY 61

Query: 73  AIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPDKRGRFVLKQV 132
           A+RGKEPKDEVQIYTWKDA+LRELTDLVKEV+  ARRRNA+LSFAFVYP+ +G + +++V
Sbjct: 62  AVRGKEPKDEVQIYTWKDASLRELTDLVKEVSVAARRRNARLSFAFVYPNNKGGYNVREV 121

Query: 133 GMTHSYGNGRRLDDSKALGELDFQIGDYLDVAI 166
           G T +Y N ++ DDSK L EL F+IGDYLDVAI
Sbjct: 122 GETMAYPNRKQPDDSKTLSELPFEIGDYLDVAI 151

[Close]

BLAST of IVF0017055 vs. ExPASy Swiss-Prot
Match: Q3T022 (Histone deacetylase complex subunit SAP18 OS=Bos taurus OX=9913 GN=SAP18 PE=2 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 8.3e-29
Identity = 68/122 (55.74%), Postives = 81/122 (66.39%), Query Frame = 0


Query: 45  EPVDREKTCPLLLRVFTKVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVA 104
           +P+DREKTCPLLLRVFT   G H   D   RG  P  E+QIYTW DATL+ELT LVKEV 
Sbjct: 18  KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVY 77

Query: 105 PEARRRNAKLSFAFVYPD-KRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDV 164
           PEAR++    +FA V+ D KR  + +K++G T S   G   DDS  L    FQIGDYLD+
Sbjct: 78  PEARKKGTHFNFAIVFTDLKRPGYRVKEIGSTMSGRKG--TDDSMTLQSQKFQIGDYLDI 137

Query: 165 AI 166
           AI
Sbjct: 138 AI 137

[Close]

BLAST of IVF0017055 vs. ExPASy Swiss-Prot
Match: O00422 (Histone deacetylase complex subunit SAP18 OS=Homo sapiens OX=9606 GN=SAP18 PE=1 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 8.3e-29
Identity = 68/122 (55.74%), Postives = 81/122 (66.39%), Query Frame = 0


Query: 45  EPVDREKTCPLLLRVFTKVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVA 104
           +P+DREKTCPLLLRVFT   G H   D   RG  P  E+QIYTW DATL+ELT LVKEV 
Sbjct: 18  KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVY 77

Query: 105 PEARRRNAKLSFAFVYPD-KRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDV 164
           PEAR++    +FA V+ D KR  + +K++G T S   G   DDS  L    FQIGDYLD+
Sbjct: 78  PEARKKGTHFNFAIVFTDVKRPGYRVKEIGSTMSGRKG--TDDSMTLQSQKFQIGDYLDI 137

Query: 165 AI 166
           AI
Sbjct: 138 AI 137

[Close]

BLAST of IVF0017055 vs. ExPASy Swiss-Prot
Match: Q5RDT5 (Histone deacetylase complex subunit SAP18 OS=Pongo abelii OX=9601 GN=SAP18 PE=2 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 8.3e-29
Identity = 68/122 (55.74%), Postives = 81/122 (66.39%), Query Frame = 0


Query: 45  EPVDREKTCPLLLRVFTKVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVA 104
           +P+DREKTCPLLLRVFT   G H   D   RG  P  E+QIYTW DATL+ELT LVKEV 
Sbjct: 18  KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVY 77

Query: 105 PEARRRNAKLSFAFVYPD-KRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDV 164
           PEAR++    +FA V+ D KR  + +K++G T S   G   DDS  L    FQIGDYLD+
Sbjct: 78  PEARKKGTHFNFAIVFTDVKRPGYRVKEIGSTMSGRKG--TDDSMTLQSQKFQIGDYLDI 137

Query: 165 AI 166
           AI
Sbjct: 138 AI 137

[Close]

BLAST of IVF0017055 vs. ExPASy Swiss-Prot
Match: O55128 (Histone deacetylase complex subunit SAP18 OS=Mus musculus OX=10090 GN=Sap18 PE=1 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.1e-28
Identity = 68/122 (55.74%), Postives = 81/122 (66.39%), Query Frame = 0


Query: 45  EPVDREKTCPLLLRVFTKVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVA 104
           +P+DREKTCPLLLRVFT   G H   D   RG  P  E+QIYTW DATL+ELT LVKEV 
Sbjct: 18  KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVY 77

Query: 105 PEARRRNAKLSFAFVYPD-KRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDV 164
           PEAR++    +FA V+ D KR  + +K++G T S   G   DDS  L    FQIGDYLD+
Sbjct: 78  PEARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMSGRKG--TDDSMTLQSQKFQIGDYLDI 137

Query: 165 AI 166
           AI
Sbjct: 138 AI 137

[Close]

BLAST of IVF0017055 vs. ExPASy TrEMBL
Match: A0A5D3D7E1 (Histone deacetylase complex subunit SAP18-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold443G001050 PE=3 SV=1)

HSP 1 Score: 333.6 bits (854), Expect = 4.8e-88
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0


Query: 1   MDKRSRDEKTSGAAAAPTQGRPSGRPLPPPSQTKAPPPNPRPRFEPVDREKTCPLLLRVF 60
           MDKRSRDEKTSGAAAAPTQGRPSGRPLPPPSQTKAPPPNPRPRFEPVDREKTCPLLLRVF
Sbjct: 1   MDKRSRDEKTSGAAAAPTQGRPSGRPLPPPSQTKAPPPNPRPRFEPVDREKTCPLLLRVF 60

Query: 61  TKVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120
           TKVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY
Sbjct: 61  TKVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120

Query: 121 PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 167
           PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL
Sbjct: 121 PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 166

[Close]

BLAST of IVF0017055 vs. ExPASy TrEMBL
Match: A0A1S3BLT9 (histone deacetylase complex subunit SAP18-like OS=Cucumis melo OX=3656 GN=LOC103490959 PE=3 SV=1)

HSP 1 Score: 333.6 bits (854), Expect = 4.8e-88
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0


Query: 1   MDKRSRDEKTSGAAAAPTQGRPSGRPLPPPSQTKAPPPNPRPRFEPVDREKTCPLLLRVF 60
           MDKRSRDEKTSGAAAAPTQGRPSGRPLPPPSQTKAPPPNPRPRFEPVDREKTCPLLLRVF
Sbjct: 1   MDKRSRDEKTSGAAAAPTQGRPSGRPLPPPSQTKAPPPNPRPRFEPVDREKTCPLLLRVF 60

Query: 61  TKVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120
           TKVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY
Sbjct: 61  TKVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120

Query: 121 PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 167
           PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL
Sbjct: 121 PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 166

[Close]

BLAST of IVF0017055 vs. ExPASy TrEMBL
Match: A0A0A0L751 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G038150 PE=3 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 1.8e-87
Identity = 164/166 (98.80%), Postives = 165/166 (99.40%), Query Frame = 0


Query: 1   MDKRSRDEKTSGAAAAPTQGRPSGRPLPPPSQTKAPPPNPRPRFEPVDREKTCPLLLRVF 60
           MDKRSRDEKTSGAA APTQGRPSGRPLPPPSQTKAPPPNPRPRFEPVDREKTCPLLLRVF
Sbjct: 1   MDKRSRDEKTSGAATAPTQGRPSGRPLPPPSQTKAPPPNPRPRFEPVDREKTCPLLLRVF 60

Query: 61  TKVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120
           TKVGGHHTDEDFA+RGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY
Sbjct: 61  TKVGGHHTDEDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120

Query: 121 PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 167
           PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL
Sbjct: 121 PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 166

[Close]

BLAST of IVF0017055 vs. ExPASy TrEMBL
Match: A0A6J1DES5 (histone deacetylase complex subunit SAP18-like OS=Momordica charantia OX=3673 GN=LOC111020386 PE=3 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 2.1e-83
Identity = 159/166 (95.78%), Postives = 160/166 (96.39%), Query Frame = 0


Query: 1   MDKRSRDEKTSGAAAAPTQGRPSGRPLPPPSQTKAPPPNPRPRFEPVDREKTCPLLLRVF 60
           MDKRSRDEK SGAA AP QGRPS RPLPPPSQ KAPPP PRPRFEPVDREKTCPLLLRVF
Sbjct: 1   MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQPKAPPPPPRPRFEPVDREKTCPLLLRVF 60

Query: 61  TKVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120
           TKVGGHH+DEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY
Sbjct: 61  TKVGGHHSDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120

Query: 121 PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 167
           PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL
Sbjct: 121 PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 166

[Close]

BLAST of IVF0017055 vs. ExPASy TrEMBL
Match: A0A6J1KTJ0 (histone deacetylase complex subunit SAP18-like OS=Cucurbita maxima OX=3661 GN=LOC111498523 PE=3 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 6.3e-80
Identity = 154/166 (92.77%), Postives = 155/166 (93.37%), Query Frame = 0


Query: 1   MDKRSRDEKTSGAAAAPTQGRPSGRPLPPPSQTKAPPPNPRPRFEPVDREKTCPLLLRVF 60
           MDKRSRDEK SGAA AP QGRPS RPLPPPSQ KAPPP PR RFEPVDREKTCPLLLRVF
Sbjct: 1   MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQAKAPPPPPRARFEPVDREKTCPLLLRVF 60

Query: 61  TKVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120
           TKVG HHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY
Sbjct: 61  TKVGSHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120

Query: 121 PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 167
           PDKRGRFVLK VG THSYGNGRRLD SKALGELDFQIGDYLDVAI+
Sbjct: 121 PDKRGRFVLKPVGTTHSYGNGRRLDGSKALGELDFQIGDYLDVAIM 166

[Close]

BLAST of IVF0017055 vs. NCBI nr
Match: XP_008448944.1 (PREDICTED: histone deacetylase complex subunit SAP18-like [Cucumis melo] >TYK19452.1 histone deacetylase complex subunit SAP18-like [Cucumis melo var. makuwa])

HSP 1 Score: 332 bits (852), Expect = 6.69e-115
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0


Query: 1   MDKRSRDEKTSGAAAAPTQGRPSGRPLPPPSQTKAPPPNPRPRFEPVDREKTCPLLLRVF 60
           MDKRSRDEKTSGAAAAPTQGRPSGRPLPPPSQTKAPPPNPRPRFEPVDREKTCPLLLRVF
Sbjct: 1   MDKRSRDEKTSGAAAAPTQGRPSGRPLPPPSQTKAPPPNPRPRFEPVDREKTCPLLLRVF 60

Query: 61  TKVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120
           TKVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY
Sbjct: 61  TKVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120

Query: 121 PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 166
           PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL
Sbjct: 121 PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 166

[Close]

BLAST of IVF0017055 vs. NCBI nr
Match: XP_004147963.1 (histone deacetylase complex subunit SAP18 [Cucumis sativus] >KGN55941.1 hypothetical protein Csa_009634 [Cucumis sativus])

HSP 1 Score: 330 bits (847), Expect = 3.87e-114
Identity = 164/166 (98.80%), Postives = 165/166 (99.40%), Query Frame = 0


Query: 1   MDKRSRDEKTSGAAAAPTQGRPSGRPLPPPSQTKAPPPNPRPRFEPVDREKTCPLLLRVF 60
           MDKRSRDEKTSGAA APTQGRPSGRPLPPPSQTKAPPPNPRPRFEPVDREKTCPLLLRVF
Sbjct: 1   MDKRSRDEKTSGAATAPTQGRPSGRPLPPPSQTKAPPPNPRPRFEPVDREKTCPLLLRVF 60

Query: 61  TKVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120
           TKVGGHHTDEDFA+RGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY
Sbjct: 61  TKVGGHHTDEDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120

Query: 121 PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 166
           PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL
Sbjct: 121 PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 166

[Close]

BLAST of IVF0017055 vs. NCBI nr
Match: XP_022152730.1 (histone deacetylase complex subunit SAP18-like [Momordica charantia])

HSP 1 Score: 317 bits (812), Expect = 8.42e-109
Identity = 159/166 (95.78%), Postives = 160/166 (96.39%), Query Frame = 0


Query: 1   MDKRSRDEKTSGAAAAPTQGRPSGRPLPPPSQTKAPPPNPRPRFEPVDREKTCPLLLRVF 60
           MDKRSRDEK SGAA AP QGRPS RPLPPPSQ KAPPP PRPRFEPVDREKTCPLLLRVF
Sbjct: 1   MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQPKAPPPPPRPRFEPVDREKTCPLLLRVF 60

Query: 61  TKVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120
           TKVGGHH+DEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY
Sbjct: 61  TKVGGHHSDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120

Query: 121 PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 166
           PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL
Sbjct: 121 PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 166

[Close]

BLAST of IVF0017055 vs. NCBI nr
Match: XP_038905116.1 (histone deacetylase complex subunit SAP18-like [Benincasa hispida])

HSP 1 Score: 312 bits (799), Expect = 1.27e-106
Identity = 158/166 (95.18%), Postives = 160/166 (96.39%), Query Frame = 0


Query: 1   MDKRSRDEKTSGAAAAPTQGRPSGRPLPPPSQTKAPPPNPRPRFEPVDREKTCPLLLRVF 60
           MDKRSRDEK SGAA AP+QGRPSGRPLPPP   KAPPP PRPRFEPVDREKTCPLLLRVF
Sbjct: 17  MDKRSRDEKMSGAATAPSQGRPSGRPLPPP---KAPPPPPRPRFEPVDREKTCPLLLRVF 76

Query: 61  TKVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120
           TKVGGHHTD+DFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY
Sbjct: 77  TKVGGHHTDDDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 136

Query: 121 PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 166
           PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL
Sbjct: 137 PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 179

[Close]

BLAST of IVF0017055 vs. NCBI nr
Match: XP_022946300.1 (histone deacetylase complex subunit SAP18-like [Cucurbita moschata] >XP_023005582.1 histone deacetylase complex subunit SAP18-like [Cucurbita maxima] >XP_023539983.1 histone deacetylase complex subunit SAP18-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 305 bits (782), Expect = 3.16e-104
Identity = 154/166 (92.77%), Postives = 155/166 (93.37%), Query Frame = 0


Query: 1   MDKRSRDEKTSGAAAAPTQGRPSGRPLPPPSQTKAPPPNPRPRFEPVDREKTCPLLLRVF 60
           MDKRSRDEK SGAA AP QGRPS RPLPPPSQ KAPPP PR RFEPVDREKTCPLLLRVF
Sbjct: 1   MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQAKAPPPPPRARFEPVDREKTCPLLLRVF 60

Query: 61  TKVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120
           TKVG HHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY
Sbjct: 61  TKVGSHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120

Query: 121 PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 166
           PDKRGRFVLK VG THSYGNGRRLD SKALGELDFQIGDYLDVAI+
Sbjct: 121 PDKRGRFVLKPVGTTHSYGNGRRLDGSKALGELDFQIGDYLDVAIM 166

[Close]

BLAST of IVF0017055 vs. TAIR 10
Match: AT2G45640.1 (SIN3 associated polypeptide P18 )

HSP 1 Score: 204.9 bits (520), Expect = 5.0e-53
Identity = 107/153 (69.93%), Postives = 124/153 (81.05%), Query Frame = 0


Query: 13  AAAAPTQGRPSGRPLPPPSQTKAPPPNPRPRFEPVDREKTCPLLLRVFTKVGGHHTDEDF 72
           A AA  QG   GRPLPPP +     P PRP+ EPVDREKTCPLLLRVFTK GGHHT ED+
Sbjct: 2   AEAARRQG--GGRPLPPPPRGVNQQP-PRPKPEPVDREKTCPLLLRVFTKSGGHHTSEDY 61

Query: 73  AIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPDKRGRFVLKQV 132
           A+RGKEPKDEVQIYTWKDA+LRELTDLVKEV+  ARRRNA+LSFAFVYP+ +G + +++V
Sbjct: 62  AVRGKEPKDEVQIYTWKDASLRELTDLVKEVSVAARRRNARLSFAFVYPNNKGGYNVREV 121

Query: 133 GMTHSYGNGRRLDDSKALGELDFQIGDYLDVAI 166
           G T +Y N ++ DDSK L EL F+IGDYLDVAI
Sbjct: 122 GETMAYPNRKQPDDSKTLSELPFEIGDYLDVAI 151

[Close]

BLAST of IVF0017055 vs. TAIR 10
Match: AT2G45640.2 (SIN3 associated polypeptide P18 )

HSP 1 Score: 198.4 bits (503), Expect = 4.7e-51
Identity = 107/153 (69.93%), Postives = 121/153 (79.08%), Query Frame = 0


Query: 13  AAAAPTQGRPSGRPLPPPSQTKAPPPNPRPRFEPVDREKTCPLLLRVFTKVGGHHTDEDF 72
           A AA  QG   GRPLPPP +     P PRP+ EPVDREKTCPLLLRVFTK GGHHT ED+
Sbjct: 2   AEAARRQG--GGRPLPPPPRGVNQQP-PRPKPEPVDREKTCPLLLRVFTKSGGHHTSEDY 61

Query: 73  AIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPDKRGRFVLKQV 132
           A+RGKEPKDEVQIYTWKDA+LRELTDLVKEV+  ARRRNA+LSFAFVYP+ +G +    V
Sbjct: 62  AVRGKEPKDEVQIYTWKDASLRELTDLVKEVSVAARRRNARLSFAFVYPNNKGGY---NV 121

Query: 133 GMTHSYGNGRRLDDSKALGELDFQIGDYLDVAI 166
           G T +Y N ++ DDSK L EL F+IGDYLDVAI
Sbjct: 122 GETMAYPNRKQPDDSKTLSELPFEIGDYLDVAI 148

The following BLAST results are available for this feature:

BLAST of IVF0017055 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O64644	7.0e-52	69.93	Histone deacetylase complex subunit SAP18 OS=Arabidopsis thaliana OX=3702 GN=At2...	[more]
Q3T022	8.3e-29	55.74	Histone deacetylase complex subunit SAP18 OS=Bos taurus OX=9913 GN=SAP18 PE=2 SV...	[more]
O00422	8.3e-29	55.74	Histone deacetylase complex subunit SAP18 OS=Homo sapiens OX=9606 GN=SAP18 PE=1 ...	[more]
Q5RDT5	8.3e-29	55.74	Histone deacetylase complex subunit SAP18 OS=Pongo abelii OX=9601 GN=SAP18 PE=2 ...	[more]
O55128	1.1e-28	55.74	Histone deacetylase complex subunit SAP18 OS=Mus musculus OX=10090 GN=Sap18 PE=1...	[more]

BLAST of IVF0017055 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D7E1	4.8e-88	100.00	Histone deacetylase complex subunit SAP18-like OS=Cucumis melo var. makuwa OX=11...	[more]
A0A1S3BLT9	4.8e-88	100.00	histone deacetylase complex subunit SAP18-like OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A0A0L751	1.8e-87	98.80	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G038150 PE=3 SV=1	[more]
A0A6J1DES5	2.1e-83	95.78	histone deacetylase complex subunit SAP18-like OS=Momordica charantia OX=3673 GN...	[more]
A0A6J1KTJ0	6.3e-80	92.77	histone deacetylase complex subunit SAP18-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]

BLAST of IVF0017055 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008448944.1	6.69e-115	100.00	PREDICTED: histone deacetylase complex subunit SAP18-like [Cucumis melo] >TYK194...	[more]
XP_004147963.1	3.87e-114	98.80	histone deacetylase complex subunit SAP18 [Cucumis sativus] >KGN55941.1 hypothet...	[more]
XP_022152730.1	8.42e-109	95.78	histone deacetylase complex subunit SAP18-like [Momordica charantia]	[more]
XP_038905116.1	1.27e-106	95.18	histone deacetylase complex subunit SAP18-like [Benincasa hispida]	[more]
XP_022946300.1	3.16e-104	92.77	histone deacetylase complex subunit SAP18-like [Cucurbita moschata] >XP_02300558...	[more]

BLAST of IVF0017055 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G45640.1	5.0e-53	69.93	SIN3 associated polypeptide P18	[more]
AT2G45640.2	4.7e-51	69.93	SIN3 associated polypeptide P18	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010516	Sin3 associated polypeptide p18	PFAM	PF06487	SAP18	coord: 46..165 e-value: 1.4E-38 score: 132.2
IPR010516	Sin3 associated polypeptide p18	PANTHER	PTHR13082	SAP18	coord: 13..166
IPR042534	Sin3 associated polypeptide p18 superfamily	GENE3D	3.10.20.550	ASAP complex, SAP18 subunit	coord: 34..166 e-value: 3.5E-46 score: 158.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..42
None	No IPR available	PANTHER	PTHR13082:SF4	DEACETYLASE COMPLEX SUBUNIT SAP18, PUTATIVE-RELATED	coord: 13..166

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0017055.1	IVF0017055.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045892	negative regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003714	transcription corepressor activity