IVF0017039 (gene) Melon (IVF77) v1

Overview


Name	IVF0017039
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	E3 ubiquitin-protein ligase
Location	chr09: 289884 .. 290549 (+)
RNA-Seq Expression	IVF0017039
Synteny	IVF0017039

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGATGATGATAAAACCACAACTACTTGCAATATCTGTACAGACGACAAAGCCTCGATGAACATGTTCACAAACCACGAGTGCTCCCATTCATTCTGCAAAGATTGCATCTCTAGTCACATCGCAGCCAAATTGGAAGATAACATAGCCAACGTCAAGTGTCCACAGACAGACTGCCAGGCATTGCTACACCCAGATATCTGTCATTCCTTCATCCCCAAAAACTTGTTTGATCGCTGGGGAGATGTGTTATGCGAGGCCTTCATTCTAGGGAACCATAGACTCATCTATTGCCCCTTCATGGACTGCTCGGTGGCGCTTATCGATGACGGAGACGAGCCAGCCAAGGAAGCAGAGTGTACGAGGTGTAATAGAATGTTCTGCGCCAAGTGTAATGTGAAGTGGCATGCGGGAGTAGAATGCGAGGAGTTTCAAAAGCTGTGTTTGGAGGAAAATGGAAGAGATGATTTGTTGGCAATGAAGTTGGCGGAGCAGCAGAATTGGAAGAGATGCCCACATTGTAGGATTTATGTGGAGATGATCGAGGGTTGCCCTTATGTAATTTGTAGGTGTGGAACTAAATTTTGCTATAGTTGTGGAGCTAAGTGGGGTGGCCGTCATGCATGTCCTGAATCTGCTGAGGCACGGAAGTACCATAAATAA

mRNA sequence

ATGGCAGATGATGATAAAACCACAACTACTTGCAATATCTGTACAGACGACAAAGCCTCGATGAACATGTTCACAAACCACGAGTGCTCCCATTCATTCTGCAAAGATTGCATCTCTAGTCACATCGCAGCCAAATTGGAAGATAACATAGCCAACGTCAAGTGTCCACAGACAGACTGCCAGGCATTGCTACACCCAGATATCTGTCATTCCTTCATCCCCAAAAACTTGTTTGATCGCTGGGGAGATGTGTTATGCGAGGCCTTCATTCTAGGGAACCATAGACTCATCTATTGCCCCTTCATGGACTGCTCGGTGGCGCTTATCGATGACGGAGACGAGCCAGCCAAGGAAGCAGAGTGTACGAGGTGTAATAGAATGTTCTGCGCCAAGTGTAATGTGAAGTGGCATGCGGGAGTAGAATGCGAGGAGTTTCAAAAGCTGTGTTTGGAGGAAAATGGAAGAGATGATTTGTTGGCAATGAAGTTGGCGGAGCAGCAGAATTGGAAGAGATGCCCACATTGTAGGATTTATGTGGAGATGATCGAGGGTTGCCCTTATGTAATTTGTAGGTGTGGAACTAAATTTTGCTATAGTTGTGGAGCTAAGTGGGGTGGCCGTCATGCATGTCCTGAATCTGCTGAGGCACGGAAGTACCATAAATAA

Coding sequence (CDS)

ATGGCAGATGATGATAAAACCACAACTACTTGCAATATCTGTACAGACGACAAAGCCTCGATGAACATGTTCACAAACCACGAGTGCTCCCATTCATTCTGCAAAGATTGCATCTCTAGTCACATCGCAGCCAAATTGGAAGATAACATAGCCAACGTCAAGTGTCCACAGACAGACTGCCAGGCATTGCTACACCCAGATATCTGTCATTCCTTCATCCCCAAAAACTTGTTTGATCGCTGGGGAGATGTGTTATGCGAGGCCTTCATTCTAGGGAACCATAGACTCATCTATTGCCCCTTCATGGACTGCTCGGTGGCGCTTATCGATGACGGAGACGAGCCAGCCAAGGAAGCAGAGTGTACGAGGTGTAATAGAATGTTCTGCGCCAAGTGTAATGTGAAGTGGCATGCGGGAGTAGAATGCGAGGAGTTTCAAAAGCTGTGTTTGGAGGAAAATGGAAGAGATGATTTGTTGGCAATGAAGTTGGCGGAGCAGCAGAATTGGAAGAGATGCCCACATTGTAGGATTTATGTGGAGATGATCGAGGGTTGCCCTTATGTAATTTGTAGGTGTGGAACTAAATTTTGCTATAGTTGTGGAGCTAAGTGGGGTGGCCGTCATGCATGTCCTGAATCTGCTGAGGCACGGAAGTACCATAAATAA

Protein sequence

MADDDKTTTTCNICTDDKASMNMFTNHECSHSFCKDCISSHIAAKLEDNIANVKCPQTDCQALLHPDICHSFIPKNLFDRWGDVLCEAFILGNHRLIYCPFMDCSVALIDDGDEPAKEAECTRCNRMFCAKCNVKWHAGVECEEFQKLCLEENGRDDLLAMKLAEQQNWKRCPHCRIYVEMIEGCPYVICRCGTKFCYSCGAKWGGRHACPESAEARKYHK

Homology

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BLAST of IVF0017039 vs. ExPASy Swiss-Prot
Match: Q9LVX0 (Probable E3 ubiquitin-protein ligase ARI3 OS=Arabidopsis thaliana OX=3702 GN=ARI3 PE=2 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 5.3e-23
Identity = 61/210 (29.05%), Postives = 99/210 (47.14%), Query Frame = 0


Query: 6   KTTTTCNICTDDKASMNMFTNHECSHSFCKDCISSHIAAKL-EDNIANVKCPQTDCQALL 65
           K T  C++C +D    N+ T  EC H FC DC   H   K+ E     + C   +C+A+ 
Sbjct: 116 KKTMKCDVCMEDDLPSNVMTRMECGHRFCNDCWIGHFTVKINEGESKRILCMAHECKAIC 175

Query: 66  HPDICHSFIPKNLFDRWGDVLCEAFILGNHRLIYCPFM-DCSVAL--IDDGDEPAKEAEC 125
             D+    +   L DR+   L E+++  N+ + +CP    C  A+  I+DG +   E  C
Sbjct: 176 DEDVVRKLVSPELADRYDRFLIESYVEDNNMVKWCPSKPHCGSAIRKIEDGHD-VVEVGC 235

Query: 126 TRCNRMFCAKCNVKWHAGVEC---EEFQKLCLEENGRDDLLAMKLAEQQNWKRCPHCRIY 185
           + C   FC  C  + H+   C   + ++K C +E+   + + +      N K CP C   
Sbjct: 236 S-CGLQFCFSCLSESHSPCSCLMWKLWKKKCEDESETVNWITV------NTKLCPKCSKP 295

Query: 186 VEMIEGCPYVICRCGTKFCYSCGAKWGGRH 209
           ++  +GC  + C+CG  FC+ CG   G  H
Sbjct: 296 IQKRDGCNLMTCKCGQHFCWLCGQATGRDH 317

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BLAST of IVF0017039 vs. ExPASy Swiss-Prot
Match: O95376 (E3 ubiquitin-protein ligase ARIH2 OS=Homo sapiens OX=9606 GN=ARIH2 PE=1 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.3e-18
Identity = 52/200 (26.00%), Postives = 91/200 (45.50%), Query Frame = 0


Query: 11  CNICTDDKASMNMFTNHECSHSFCKDCISSHIAAKLEDNI-ANVKCPQTDCQALLHPDIC 70
           C +C       N+  +  C H FC+ C   H +  ++D +   V C   DC      D  
Sbjct: 139 CAVCMQFVRKENLL-SLACQHQFCRSCWEQHCSVLVKDGVGVGVSCMAQDCPLRTPEDFV 198

Query: 71  HSFIP-KNLFDRWGDVLCEAFILGNHRLIYCPFMDCSVALIDDGDEPAKEAECTRCNRMF 130
              +P + L +++   L   ++  +++L  CP  DC + +I   +  A+  +C RCN +F
Sbjct: 199 FPLLPNEELREKYRRYLFRDYVESHYQLQLCPGADCPM-VIRVQEPRARRVQCNRCNEVF 258

Query: 131 CAKCNVKWHAGVECEEFQK---LCLEENGRDDLLAMKLAEQQNWKRCPHCRIYVEMIEGC 190
           C KC   +HA  +C   +K    C +++   + ++       + K CP C I +E   GC
Sbjct: 259 CFKCRQMYHAPTDCATIRKWLTKCADDSETANYIS------AHTKDCPKCNICIEKNGGC 318

Query: 191 PYVIC-RCGTKFCYSCGAKW 205
            ++ C +C   FC+ C   W
Sbjct: 319 NHMQCSKCKHDFCWMCLGDW 330

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BLAST of IVF0017039 vs. ExPASy Swiss-Prot
Match: Q925F3 (E3 ubiquitin-protein ligase RNF144A OS=Mus musculus OX=10090 GN=Rnf144a PE=1 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.1e-17
Identity = 49/197 (24.87%), Postives = 85/197 (43.15%), Query Frame = 0


Query: 10  TCNICTDDKASMNMFTNHECSHSFCKDCISSHIAAKLEDNIAN-VKCPQTDC--QALLHP 69
           +C +C  +  +  M T  +C   FC  C+  ++   +++ +   + CP   C  Q  L  
Sbjct: 19  SCKLCLGEYPAEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQE 78

Query: 70  DICHSFIPKNLFDRWGDVLCEAFILGNHRLIYCPFMDCSVA--LIDDGDEPAKEAECTRC 129
           +     +   +  R+  +  E  +L +    +CP   C     L D G +  +  +C  C
Sbjct: 79  NEIECMVAAEIMQRYKKLQFEREVLFDPCRTWCPASTCQAVCQLQDIGLQTPQLVQCKAC 138

Query: 130 NRMFCAKCNVKWHAGVECEEFQKLCLEENGRDDLLAMKLAEQQNWKRCPHCRIYVEMIEG 189
           +  FC+ C  +WH G  C E   +            M+  +    KRCP CR+Y+E  EG
Sbjct: 139 DMEFCSACKARWHPGQGCPETMPITFLPGETSSAFKMEEGDAP-IKRCPKCRVYIERDEG 198

Query: 190 CPYVICR-CGTKFCYSC 201
           C  ++C+ C   FC+ C
Sbjct: 199 CAQMMCKNCKHAFCWYC 214

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BLAST of IVF0017039 vs. ExPASy Swiss-Prot
Match: Q8TC41 (Probable E3 ubiquitin-protein ligase RNF217 OS=Homo sapiens OX=9606 GN=RNF217 PE=2 SV=4)

HSP 1 Score: 90.5 bits (223), Expect = 2.6e-17
Identity = 56/210 (26.67%), Postives = 97/210 (46.19%), Query Frame = 0


Query: 11  CNICTDDKASMNMFTNHECSHSFCKDCISSHIAAKLEDNIANVKCPQTDCQALLHPDICH 70
           C +C +DK    +     C  + C++C+  +++A+++     +KCP T+C   L      
Sbjct: 263 CRVCLEDKPIKPLPC---CKKAVCEECLKVYLSAQVQLGQVEIKCPITECFEFLE----E 322

Query: 71  SFIPKNLFDRWGDVLCEAFILGNHRLIY----CPFMDCSVALIDDGDEPAK-------EA 130
           + +  NL     D +   + L   R+      CP           G  P         + 
Sbjct: 323 TTVVYNLTHE--DSIKYKYFLELGRIDSSTKPCPQCKHFTTFKKKGHIPTPSRSESKYKI 382

Query: 131 ECTRCNRMFCAKCNVKWHAGVECEEFQKLCLEENGRDDLLAMKLAE----QQNWKRCPHC 190
           +C  C  ++C KC+  WH GV C+E++K        D LL    +E    Q+N ++CP C
Sbjct: 383 QCPTCQFVWCFKCHSPWHEGVNCKEYKK-------GDKLLRHWASEIEHGQRNAQKCPKC 442

Query: 191 RIYVEMIEGCPYVIC-RCGTKFCYSCGAKW 205
           +I+++  EGC ++ C +C T FCY CG ++
Sbjct: 443 KIHIQRTEGCDHMTCSQCNTNFCYRCGERY 456

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BLAST of IVF0017039 vs. ExPASy Swiss-Prot
Match: D3YYI7 (Probable E3 ubiquitin-protein ligase RNF217 OS=Mus musculus OX=10090 GN=Rnf217 PE=3 SV=2)

HSP 1 Score: 90.1 bits (222), Expect = 3.3e-17
Identity = 55/210 (26.19%), Postives = 97/210 (46.19%), Query Frame = 0


Query: 11  CNICTDDKASMNMFTNHECSHSFCKDCISSHIAAKLEDNIANVKCPQTDCQALLHPDICH 70
           C +C +DK    +     C  + C++C+  +++++++     +KCP T+C   L      
Sbjct: 236 CRVCLEDKPIKPLPC---CKKAVCEECLKIYLSSQVQLGQVEIKCPVTECFEFLE----E 295

Query: 71  SFIPKNLFDRWGDVLCEAFILGNHRLIY----CPFMDCSVALIDDGDEPAK-------EA 130
           + +  NL     D +   + L   R+      CP           G  P         + 
Sbjct: 296 TTVVYNLTHE--DSIKYKYFLELGRIDSSTKPCPQCKHFTTFKKKGHIPTPSRSESRYKI 355

Query: 131 ECTRCNRMFCAKCNVKWHAGVECEEFQKLCLEENGRDDLLAMKLAE----QQNWKRCPHC 190
           +C  C  ++C KC+  WH GV C+E++K        D LL    +E    Q+N ++CP C
Sbjct: 356 QCPTCQLIWCFKCHSPWHEGVNCKEYKK-------GDKLLRHWASEIEHGQRNAQKCPKC 415

Query: 191 RIYVEMIEGCPYVIC-RCGTKFCYSCGAKW 205
           +I+++  EGC ++ C +C T FCY CG ++
Sbjct: 416 KIHIQRTEGCDHMTCSQCNTNFCYRCGERY 429

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BLAST of IVF0017039 vs. ExPASy TrEMBL
Match: A0A5A7TCD1 (Putative E3 ubiquitin-protein ligase RNF217 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G00360 PE=3 SV=1)

HSP 1 Score: 493.8 bits (1270), Expect = 3.7e-136
Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 0


Query: 1   MADDDKTTTTCNICTDDKASMNMFTNHECSHSFCKDCISSHIAAKLEDNIANVKCPQTDC 60
           MADDDKTTTTCNICTDDKASMNMFTNHECSHSFCKDCISSHIAAKLEDNIANVKCPQTDC
Sbjct: 1   MADDDKTTTTCNICTDDKASMNMFTNHECSHSFCKDCISSHIAAKLEDNIANVKCPQTDC 60

Query: 61  QALLHPDICHSFIPKNLFDRWGDVLCEAFILGNHRLIYCPFMDCSVALIDDGDEPAKEAE 120
           QALLHPDICHSFIPKNLFDRWGDVLCEAFILGNHRLIYCPFMDCSVALIDDGDEPAKEAE
Sbjct: 61  QALLHPDICHSFIPKNLFDRWGDVLCEAFILGNHRLIYCPFMDCSVALIDDGDEPAKEAE 120

Query: 121 CTRCNRMFCAKCNVKWHAGVECEEFQKLCLEENGRDDLLAMKLAEQQNWKRCPHCRIYVE 180
           CTRCNRMFCAKCNVKWHAGVECEEFQKLCLEENGRDDLLAMKLAEQQNWKRCPHCRIYVE
Sbjct: 121 CTRCNRMFCAKCNVKWHAGVECEEFQKLCLEENGRDDLLAMKLAEQQNWKRCPHCRIYVE 180

Query: 181 MIEGCPYVICRCGTKFCYSCGAKWGGRHACPESAEARKYHK 222
           MIEGCPYVICRCGTKFCYSCGAKWGGRHACPESAEARKYHK
Sbjct: 181 MIEGCPYVICRCGTKFCYSCGAKWGGRHACPESAEARKYHK 221

[Close]

BLAST of IVF0017039 vs. ExPASy TrEMBL
Match: A0A0A0KSV5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G650600 PE=3 SV=1)

HSP 1 Score: 437.6 bits (1124), Expect = 3.2e-119
Identity = 194/222 (87.39%), Postives = 204/222 (91.89%), Query Frame = 0


Query: 1   MADDDKTTTTCNICTDDKASMNMFTNHECSHSFCKDCISSHIAAKLEDNIANVKCPQTDC 60
           MADDDKTTT CNICTDDKA +NMFTNHECSHSFCKDCIS+HIAAKLEDNIANVKCPQ  C
Sbjct: 1   MADDDKTTTNCNICTDDKALVNMFTNHECSHSFCKDCISNHIAAKLEDNIANVKCPQPGC 60

Query: 61  QALLHPDICHSFIPKNLFDRWGDVLCEAFILGNHRLIYCPFMDCSVALIDDGDEPAKEAE 120
           +A+LHPD+CHSF+PKN+ DRWG VLCEAFILGNHRLIYCPFMDCSVALIDDGDE  KEAE
Sbjct: 61  EAVLHPDVCHSFVPKNVLDRWGYVLCEAFILGNHRLIYCPFMDCSVALIDDGDEATKEAE 120

Query: 121 CTRCNRMFCAKCNVKWHAGVECEEFQKLCLEENGRDD-LLAMKLAEQQNWKRCPHCRIYV 180
           C  CNRMFCAKCNV WH GVECEEFQKLCLEE  RDD LLA+KLAEQ+NWKRCPHCR YV
Sbjct: 121 CPGCNRMFCAKCNVVWHGGVECEEFQKLCLEEKERDDHLLAIKLAEQENWKRCPHCRTYV 180

Query: 181 EMIEGCPYVICRCGTKFCYSCGAKWGGRHACPESAEARKYHK 222
           EMIEGCPY+ICRC TKFCYSCGAKWGG HACPESAEARKYHK
Sbjct: 181 EMIEGCPYIICRCRTKFCYSCGAKWGGSHACPESAEARKYHK 222

[Close]

BLAST of IVF0017039 vs. ExPASy TrEMBL
Match: A0A6J1GX07 (probable E3 ubiquitin-protein ligase ARI10 OS=Cucurbita moschata OX=3662 GN=LOC111457924 PE=3 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 7.4e-68
Identity = 118/217 (54.38%), Postives = 157/217 (72.35%), Query Frame = 0


Query: 7   TTTTCNICTDDKASMNMFTNHECSHSFCKDCISSHIAAKLEDNIANVKCPQTDCQALLHP 66
           +TT C ICTD K++  MFT+  CSH+FC DCIS HIAAKLED++A VKCP+  C A+L P
Sbjct: 70  STTLCTICTDTKSASEMFTSTGCSHTFCADCISKHIAAKLEDSMA-VKCPEPKCAAVLEP 129

Query: 67  DICHSFIPKNLFDRWGDVLCEAFILGNHRLIYCPFMDCSVALIDDGDEPAKEAECTRCNR 126
           ++C SF+PK + +RWGD L +A +L   +++YCPF DCS  ++D+ D  A   EC +C R
Sbjct: 130 EMCDSFVPKEVLERWGDALLKAMLL-KWKMVYCPFKDCSAGMVDEEDMEA--VECPKCWR 189

Query: 127 MFCAKCNVKWHAGVECEEFQKLCLEENG--RDDLLAMKLAEQQNWKRCPHCRIYVEMIEG 186
           MFCAKC V WH  + C EFQ+L L+  G  R++ + MKLA+++ WKRCPHC+I VE IEG
Sbjct: 190 MFCAKCGVGWHGDMNCTEFQRL-LKNGGVDREEEMTMKLADERKWKRCPHCKILVEKIEG 249

Query: 187 CPYVICRCGTKFCYSCGAKWGGRHACPESAEARKYHK 222
           C ++ CRCG++FCY CGAKW G HACP SA  R  ++
Sbjct: 250 CLHITCRCGSEFCYCCGAKWNGHHACPPSAYERTAYR 281

[Close]

BLAST of IVF0017039 vs. ExPASy TrEMBL
Match: A0A7N2LM99 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=3 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 7.4e-68
Identity = 105/202 (51.98%), Postives = 143/202 (70.79%), Query Frame = 0


Query: 9   TTCNICTDDKASMNMFTNHECSHSFCKDCISSHIAAKLEDNIANVKCPQTDCQALLHPDI 68
           T C IC D K +  MFTN+ C+HSFC  CIS ++A KL+DNI++VKCP   C+ LL P  
Sbjct: 92  TLCMICMDGKLTGEMFTNNSCTHSFCAGCISQYVATKLQDNISSVKCPDPKCRGLLEPQC 151

Query: 69  CHSFIPKNLFDRWGDVLCEAFILGNHRLIYCPFMDCSVALIDDGDEPAKEAECTRCNRMF 128
           C   IP+ +FDRWGD LCE+ ILG+ +  YCP+ DCS  L+DDG E    +EC  C R+F
Sbjct: 152 CRDIIPQEVFDRWGDALCESLILGSQK-FYCPYKDCSAMLVDDGGEVVTASECPDCRRLF 211

Query: 129 CAKCNVKWHAGVECEEFQKLCLEENGRDDLLAMKLAEQQNWKRCPHCRIYVEMIEGCPYV 188
           CA+C V WHAG+EC EFQ +  +E  R+D++ M+LA+++NW+RCPHC+ YV+ ++GC ++
Sbjct: 212 CAQCRVSWHAGIECREFQNINKDEREREDIMVMELAKKKNWRRCPHCKFYVDKVQGCLHI 271

Query: 189 ICRCGTKFCYSCGAKWGGRHAC 211
            CRCG  FCY CG++W   H C
Sbjct: 272 ACRCGFHFCYGCGSEWDEVHQC 292

[Close]

BLAST of IVF0017039 vs. ExPASy TrEMBL
Match: A0A7N2R445 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=3 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 7.4e-68
Identity = 105/202 (51.98%), Postives = 143/202 (70.79%), Query Frame = 0


Query: 9   TTCNICTDDKASMNMFTNHECSHSFCKDCISSHIAAKLEDNIANVKCPQTDCQALLHPDI 68
           T C IC D K +  MFTN+ C+HSFC  CIS ++A KL+DNI++VKCP   C+ LL P  
Sbjct: 92  TLCMICMDGKLTGEMFTNNSCTHSFCAGCISQYVATKLQDNISSVKCPDPKCRGLLEPQC 151

Query: 69  CHSFIPKNLFDRWGDVLCEAFILGNHRLIYCPFMDCSVALIDDGDEPAKEAECTRCNRMF 128
           C   IP+ +FDRWGD LCE+ ILG+ +  YCP+ DCS  L+DDG E    +EC  C R+F
Sbjct: 152 CRDIIPQEVFDRWGDALCESLILGSQK-FYCPYKDCSAMLVDDGGEVVTASECPDCRRLF 211

Query: 129 CAKCNVKWHAGVECEEFQKLCLEENGRDDLLAMKLAEQQNWKRCPHCRIYVEMIEGCPYV 188
           CA+C V WHAG+EC EFQ +  +E  R+D++ M+LA+++NW+RCPHC+ YV+ ++GC ++
Sbjct: 212 CAQCRVSWHAGIECREFQNINKDEREREDIMVMELAKKKNWRRCPHCKFYVDKVQGCLHI 271

Query: 189 ICRCGTKFCYSCGAKWGGRHAC 211
            CRCG  FCY CG++W   H C
Sbjct: 272 ACRCGFHFCYGCGSEWDEVHQC 292

[Close]

BLAST of IVF0017039 vs. NCBI nr
Match: KAA0039247.1 (putative E3 ubiquitin-protein ligase RNF217 isoform X2 [Cucumis melo var. makuwa] >TYK00433.1 putative E3 ubiquitin-protein ligase RNF217 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 485 bits (1249), Expect = 1.29e-173
Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 0


Query: 1   MADDDKTTTTCNICTDDKASMNMFTNHECSHSFCKDCISSHIAAKLEDNIANVKCPQTDC 60
           MADDDKTTTTCNICTDDKASMNMFTNHECSHSFCKDCISSHIAAKLEDNIANVKCPQTDC
Sbjct: 1   MADDDKTTTTCNICTDDKASMNMFTNHECSHSFCKDCISSHIAAKLEDNIANVKCPQTDC 60

Query: 61  QALLHPDICHSFIPKNLFDRWGDVLCEAFILGNHRLIYCPFMDCSVALIDDGDEPAKEAE 120
           QALLHPDICHSFIPKNLFDRWGDVLCEAFILGNHRLIYCPFMDCSVALIDDGDEPAKEAE
Sbjct: 61  QALLHPDICHSFIPKNLFDRWGDVLCEAFILGNHRLIYCPFMDCSVALIDDGDEPAKEAE 120

Query: 121 CTRCNRMFCAKCNVKWHAGVECEEFQKLCLEENGRDDLLAMKLAEQQNWKRCPHCRIYVE 180
           CTRCNRMFCAKCNVKWHAGVECEEFQKLCLEENGRDDLLAMKLAEQQNWKRCPHCRIYVE
Sbjct: 121 CTRCNRMFCAKCNVKWHAGVECEEFQKLCLEENGRDDLLAMKLAEQQNWKRCPHCRIYVE 180

Query: 181 MIEGCPYVICRCGTKFCYSCGAKWGGRHACPESAEARKYHK 221
           MIEGCPYVICRCGTKFCYSCGAKWGGRHACPESAEARKYHK
Sbjct: 181 MIEGCPYVICRCGTKFCYSCGAKWGGRHACPESAEARKYHK 221

[Close]

BLAST of IVF0017039 vs. NCBI nr
Match: XP_004141646.1 (probable E3 ubiquitin-protein ligase ARI3 [Cucumis sativus])

HSP 1 Score: 429 bits (1103), Expect = 2.46e-151
Identity = 194/222 (87.39%), Postives = 204/222 (91.89%), Query Frame = 0


Query: 1   MADDDKTTTTCNICTDDKASMNMFTNHECSHSFCKDCISSHIAAKLEDNIANVKCPQTDC 60
           MADDDKTTT CNICTDDKA +NMFTNHECSHSFCKDCIS+HIAAKLEDNIANVKCPQ  C
Sbjct: 1   MADDDKTTTNCNICTDDKALVNMFTNHECSHSFCKDCISNHIAAKLEDNIANVKCPQPGC 60

Query: 61  QALLHPDICHSFIPKNLFDRWGDVLCEAFILGNHRLIYCPFMDCSVALIDDGDEPAKEAE 120
           +A+LHPD+CHSF+PKN+ DRWG VLCEAFILGNHRLIYCPFMDCSVALIDDGDE  KEAE
Sbjct: 61  EAVLHPDVCHSFVPKNVLDRWGYVLCEAFILGNHRLIYCPFMDCSVALIDDGDEATKEAE 120

Query: 121 CTRCNRMFCAKCNVKWHAGVECEEFQKLCLEENGRDD-LLAMKLAEQQNWKRCPHCRIYV 180
           C  CNRMFCAKCNV WH GVECEEFQKLCLEE  RDD LLA+KLAEQ+NWKRCPHCR YV
Sbjct: 121 CPGCNRMFCAKCNVVWHGGVECEEFQKLCLEEKERDDHLLAIKLAEQENWKRCPHCRTYV 180

Query: 181 EMIEGCPYVICRCGTKFCYSCGAKWGGRHACPESAEARKYHK 221
           EMIEGCPY+ICRC TKFCYSCGAKWGG HACPESAEARKYHK
Sbjct: 181 EMIEGCPYIICRCRTKFCYSCGAKWGGSHACPESAEARKYHK 222

[Close]

BLAST of IVF0017039 vs. NCBI nr
Match: KAE8649011.1 (hypothetical protein Csa_009107 [Cucumis sativus])

HSP 1 Score: 419 bits (1078), Expect = 1.96e-146
Identity = 190/218 (87.16%), Postives = 200/218 (91.74%), Query Frame = 0


Query: 1   MADDDKTTTTCNICTDDKASMNMFTNHECSHSFCKDCISSHIAAKLEDNIANVKCPQTDC 60
           MADDDKTTT CNICTDDKA +NMFTNHECSHSFCKDCIS+HIAAKLEDNIANVKCPQ  C
Sbjct: 12  MADDDKTTTNCNICTDDKALVNMFTNHECSHSFCKDCISNHIAAKLEDNIANVKCPQPGC 71

Query: 61  QALLHPDICHSFIPKNLFDRWGDVLCEAFILGNHRLIYCPFMDCSVALIDDGDEPAKEAE 120
           +A+LHPD+CHSF+PKN+ DRWG VLCEAFILGNHRLIYCPFMDCSVALIDDGDE  KEAE
Sbjct: 72  EAVLHPDVCHSFVPKNVLDRWGYVLCEAFILGNHRLIYCPFMDCSVALIDDGDEATKEAE 131

Query: 121 CTRCNRMFCAKCNVKWHAGVECEEFQKLCLEENGRDD-LLAMKLAEQQNWKRCPHCRIYV 180
           C  CNRMFCAKCNV WH GVECEEFQKLCLEE  RDD LLA+KLAEQ+NWKRCPHCR YV
Sbjct: 132 CPGCNRMFCAKCNVVWHGGVECEEFQKLCLEEKERDDHLLAIKLAEQENWKRCPHCRTYV 191

Query: 181 EMIEGCPYVICRCGTKFCYSCGAKWGGRHACPESAEAR 217
           EMIEGCPY+ICRC TKFCYSCGAKWGG HACPESAEAR
Sbjct: 192 EMIEGCPYIICRCRTKFCYSCGAKWGGSHACPESAEAR 229

[Close]

BLAST of IVF0017039 vs. NCBI nr
Match: XP_022956145.1 (probable E3 ubiquitin-protein ligase ARI10 [Cucurbita moschata])

HSP 1 Score: 259 bits (662), Expect = 2.50e-83
Identity = 118/216 (54.63%), Postives = 156/216 (72.22%), Query Frame = 0


Query: 8   TTTCNICTDDKASMNMFTNHECSHSFCKDCISSHIAAKLEDNIANVKCPQTDCQALLHPD 67
           TT C ICTD K++  MFT+  CSH+FC DCIS HIAAKLED++A VKCP+  C A+L P+
Sbjct: 71  TTLCTICTDTKSASEMFTSTGCSHTFCADCISKHIAAKLEDSMA-VKCPEPKCAAVLEPE 130

Query: 68  ICHSFIPKNLFDRWGDVLCEAFILGNHRLIYCPFMDCSVALIDDGDEPAKEAECTRCNRM 127
           +C SF+PK + +RWGD L +A +L   +++YCPF DCS  ++D+ D  A   EC +C RM
Sbjct: 131 MCDSFVPKEVLERWGDALLKAMLL-KWKMVYCPFKDCSAGMVDEEDMEA--VECPKCWRM 190

Query: 128 FCAKCNVKWHAGVECEEFQKLCLEENG--RDDLLAMKLAEQQNWKRCPHCRIYVEMIEGC 187
           FCAKC V WH  + C EFQ+L L+  G  R++ + MKLA+++ WKRCPHC+I VE IEGC
Sbjct: 191 FCAKCGVGWHGDMNCTEFQRL-LKNGGVDREEEMTMKLADERKWKRCPHCKILVEKIEGC 250

Query: 188 PYVICRCGTKFCYSCGAKWGGRHACPESAEARKYHK 221
            ++ CRCG++FCY CGAKW G HACP SA  R  ++
Sbjct: 251 LHITCRCGSEFCYCCGAKWNGHHACPPSAYERTAYR 281

[Close]

BLAST of IVF0017039 vs. NCBI nr
Match: KAG5008957.1 (hypothetical protein JHK87_017472 [Glycine soja] >KAG5036743.1 hypothetical protein JHK86_017583 [Glycine max] >KAG5141837.1 hypothetical protein JHK82_017532 [Glycine max])

HSP 1 Score: 259 bits (662), Expect = 3.44e-83
Identity = 109/200 (54.50%), Postives = 139/200 (69.50%), Query Frame = 0


Query: 11  CNICTDDKASMNMFTNHECSHSFCKDCISSHIAAKLEDNIANVKCPQTDCQALLHPDICH 70
           C IC D K    MF N  CSHSFC DCI  ++A K+++NI+ VKCP   C+ ++ P  C 
Sbjct: 90  CGICMDAKYGEEMFRNQNCSHSFCDDCIGRYVATKVQENISMVKCPHPKCKGVIEPQYCR 149

Query: 71  SFIPKNLFDRWGDVLCEAFILGNHRLIYCPFMDCSVALIDDGDEPAKEAECTRCNRMFCA 130
           SFIPK +FDRW D LCE  + G+ +  YCPF DCS  LI+D +E    +EC  CNR+FCA
Sbjct: 150 SFIPKEVFDRWEDALCENLVPGSQKF-YCPFKDCSAMLINDAEEIVTVSECPHCNRLFCA 209

Query: 131 KCNVKWHAGVECEEFQKLCLEENGRDDLLAMKLAEQQNWKRCPHCRIYVEMIEGCPYVIC 190
           +C V WHAGVEC+EFQ L   E  R+DL+ M+LA+ +NWKRCP C  YVE I+GC ++ C
Sbjct: 210 QCKVSWHAGVECKEFQNLKEYEREREDLMVMELAKNKNWKRCPKCSFYVERIDGCTHISC 269

Query: 191 RCGTKFCYSCGAKWGGRHAC 210
           RCG +FCY+CG+KWG  HAC
Sbjct: 270 RCGNEFCYACGSKWGSHHAC 288

[Close]

BLAST of IVF0017039 vs. TAIR 10
Match: AT3G53690.1 (RING/U-box superfamily protein )

HSP 1 Score: 228.0 bits (580), Expect = 7.3e-60
Identity = 94/202 (46.53%), Postives = 132/202 (65.35%), Query Frame = 0


Query: 2   ADDDKTTT-TCNICTDDKASMNMFTNHECSHSFCKDCISSHIAAKLEDNIANVKCPQTDC 61
           +   KT T  C IC D K+ +  F    CSH +C DC+S +IAAKL+DNI +++CP + C
Sbjct: 105 SSSSKTATFDCEICVDSKSIIESFRIGGCSHFYCNDCVSKYIAAKLQDNILSIECPVSGC 164

Query: 62  QALLHPDICHSFIPKNLFDRWGDVLCEAFILGNHRLIYCPFMDCS-VALIDDGDEPAKEA 121
              L PD C   +PK +FDRWGD LCEA ++ + +  YCP+ DCS +  +++ +   K++
Sbjct: 165 SGRLEPDQCRQILPKEVFDRWGDALCEAVVMRSKK-FYCPYKDCSALVFLEESEVKMKDS 224

Query: 122 ECTRCNRMFCAKCNVKWHAGVECEEFQKLCLEENGRDDLLAMKLAEQQNWKRCPHCRIYV 181
           EC  C+RM C +C  +WH  + CEEFQKL   E GRDD+L   +A+Q+ WKRCP C+ Y+
Sbjct: 225 ECPHCHRMVCVECGTQWHPEMTCEEFQKLAANERGRDDILLATMAKQKKWKRCPSCKFYI 284

Query: 182 EMIEGCPYVICRCGTKFCYSCG 202
           E  +GC Y+ CRCG  FCY+CG
Sbjct: 285 EKSQGCLYMKCRCGLAFCYNCG 305

[Close]

BLAST of IVF0017039 vs. TAIR 10
Match: AT3G14250.1 (RING/U-box superfamily protein )

HSP 1 Score: 214.9 bits (546), Expect = 6.4e-56
Identity = 84/206 (40.78%), Postives = 132/206 (64.08%), Query Frame = 0


Query: 11  CNICTDDKASMNMFT-NHECSHSFCKDCISSHIAAKLEDNIANVKCPQTDCQALLHPDIC 70
           C IC D+K S ++F     C+H++C DC   ++A K+++N + +KCP  +C  L+ P  C
Sbjct: 95  CMICMDEKPSSDIFRGTTNCTHAYCTDCTVRYVATKIKENASRIKCPDVECTRLIEPYTC 154

Query: 71  HSFIPKNLFDRWGDVLCEAFILGNHRLIYCPFMDCSVALI--DDGDEPAKEAECTRCNRM 130
              IPK++FDRW  +LCE+ ++ +    YCPF DCS  ++  ++GD    + EC  C+R+
Sbjct: 155 RDLIPKDVFDRWEKILCES-LISSWDKFYCPFKDCSAMMVNNENGDANVTQTECRSCHRL 214

Query: 131 FCAKCNVKWHAGVECEEFQKL---CLEENGRDDLLAMKLAEQQNWKRCPHCRIYVEMIEG 190
           FC +C V WHAG+ C+EFQ+      + +  DD L +++A+ + W+RCP C+ YV+ +EG
Sbjct: 215 FCVQCKVTWHAGIGCDEFQRFGNTKKKSSDEDDALLIQMAKNKQWRRCPSCKFYVDKVEG 274

Query: 191 CPYVICRCGTKFCYSCGAKWGGRHAC 211
           C ++ CRCG +FCY CG+ W   HAC
Sbjct: 275 CQHIKCRCGYQFCYGCGSVWSSSHAC 299

[Close]

BLAST of IVF0017039 vs. TAIR 10
Match: AT4G19670.1 (RING/U-box superfamily protein )

HSP 1 Score: 161.8 bits (408), Expect = 6.4e-40
Identity = 78/224 (34.82%), Postives = 120/224 (53.57%), Query Frame = 0


Query: 3   DDDKTTTTCNICTDDKASMNMFTNHECSHSFCKDCISSHIAAKLEDNIANVKCPQTDCQA 62
           D DK    C+IC +D+ S  M  + +C+H FC  C+ +++  K++ +   ++CPQ  C+ 
Sbjct: 199 DGDKPIENCSICCEDRQS-EMMLSLKCTHKFCSHCMKTYVEGKVKTSEVPIRCPQVQCKH 258

Query: 63  LLHPDICHSFIPKNLFDRWGDV-LCEAFILGNHRLIYCPFMDCSVAL-----IDDGDEPA 122
            L    C SF+P   F  + +  +C      N+  IYCP+ +CS  L     +  G   +
Sbjct: 259 YLSAAECKSFLPVTTFKSFEEANVCSK----NNGKIYCPYPNCSFLLDPQECLSSGRASS 318

Query: 123 KEA---------ECTRCNRMFCAKCNVKWHAGVECEEFQKLCLEENGRDDLLAMKLAEQQ 182
             +         EC  C R  C  C V WHA + CEEFQ L ++E   DD+   +LA  +
Sbjct: 319 SSSTQSENSCCVECPVCERFVCVDCGVPWHASMSCEEFQILPVDERYPDDITLHRLARYK 378

Query: 183 NWKRCPHCRIYVEMIEGCPYVICRCGTKFCYSCGAKW-GGRHAC 211
            W+RC  CRI +E+ +GC ++ CRCG +FCYSCGA++  G+  C
Sbjct: 379 RWRRCQQCRIMIELAQGCNHMTCRCGHEFCYSCGAEYREGQQTC 417

[Close]

BLAST of IVF0017039 vs. TAIR 10
Match: AT4G19670.2 (RING/U-box superfamily protein )

HSP 1 Score: 161.8 bits (408), Expect = 6.4e-40
Identity = 78/224 (34.82%), Postives = 120/224 (53.57%), Query Frame = 0


Query: 3   DDDKTTTTCNICTDDKASMNMFTNHECSHSFCKDCISSHIAAKLEDNIANVKCPQTDCQA 62
           D DK    C+IC +D+ S  M  + +C+H FC  C+ +++  K++ +   ++CPQ  C+ 
Sbjct: 199 DGDKPIENCSICCEDRQS-EMMLSLKCTHKFCSHCMKTYVEGKVKTSEVPIRCPQVQCKH 258

Query: 63  LLHPDICHSFIPKNLFDRWGDV-LCEAFILGNHRLIYCPFMDCSVAL-----IDDGDEPA 122
            L    C SF+P   F  + +  +C      N+  IYCP+ +CS  L     +  G   +
Sbjct: 259 YLSAAECKSFLPVTTFKSFEEANVCSK----NNGKIYCPYPNCSFLLDPQECLSSGRASS 318

Query: 123 KEA---------ECTRCNRMFCAKCNVKWHAGVECEEFQKLCLEENGRDDLLAMKLAEQQ 182
             +         EC  C R  C  C V WHA + CEEFQ L ++E   DD+   +LA  +
Sbjct: 319 SSSTQSENSCCVECPVCERFVCVDCGVPWHASMSCEEFQILPVDERYPDDITLHRLARYK 378

Query: 183 NWKRCPHCRIYVEMIEGCPYVICRCGTKFCYSCGAKW-GGRHAC 211
            W+RC  CRI +E+ +GC ++ CRCG +FCYSCGA++  G+  C
Sbjct: 379 RWRRCQQCRIMIELAQGCNHMTCRCGHEFCYSCGAEYREGQQTC 417

[Close]

BLAST of IVF0017039 vs. TAIR 10
Match: AT5G37560.1 (RING/U-box superfamily protein )

HSP 1 Score: 139.4 bits (350), Expect = 3.4e-33
Identity = 65/205 (31.71%), Postives = 107/205 (52.20%), Query Frame = 0


Query: 10  TCNICTDDKASMNMFTNHECSHSFCKDCISSHIAAKLEDNIANVKCPQTDCQALLHPDIC 69
           TC+IC+D   + +M  N +C H  C  C+   +  KL   I    C +  C++ L  + C
Sbjct: 180 TCSICSDKTDAEHMLLNDKCLHRHCFSCVKQQVKVKLRSGIV-PPCLEDGCKSELTLESC 239

Query: 70  HSFIPKNLFDRWGDVLCEAFILGNHRLIYCPFMDCSVALIDDGDEPAKEAE------CTR 129
              +   L + W   + E  ++ +   IYCP+  CS+ +     E ++EAE      C +
Sbjct: 240 SMVLTPKLIEMWKRKM-EEDLIPDAEKIYCPYRSCSMLM--SKTELSREAEQSNVRACIK 299

Query: 130 CNRMFCAKCNVKWHAGVECEEFQKLCLEENGRDDLLAMKLAEQQNWKRCPHCRIYVEMIE 189
           C+ +FC  C V WH+ + C +++++  E    D +L + LA  Q W++C  C+  +E+ E
Sbjct: 300 CSELFCIDCKVPWHSDLSCADYKRIHSERLVNDMMLKV-LANDQMWRQCSECKHMIELTE 359

Query: 190 GCPYVICRCGTKFCYSCGAKWGGRH 209
           GC ++ CRCG +FCY CG KW   H
Sbjct: 360 GCNHITCRCGYEFCYRCGHKWTKYH 379

The following BLAST results are available for this feature:

BLAST of IVF0017039 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LVX0	5.3e-23	29.05	Probable E3 ubiquitin-protein ligase ARI3 OS=Arabidopsis thaliana OX=3702 GN=ARI...	[more]
O95376	2.3e-18	26.00	E3 ubiquitin-protein ligase ARIH2 OS=Homo sapiens OX=9606 GN=ARIH2 PE=1 SV=1	[more]
Q925F3	1.1e-17	24.87	E3 ubiquitin-protein ligase RNF144A OS=Mus musculus OX=10090 GN=Rnf144a PE=1 SV=...	[more]
Q8TC41	2.6e-17	26.67	Probable E3 ubiquitin-protein ligase RNF217 OS=Homo sapiens OX=9606 GN=RNF217 PE...	[more]
D3YYI7	3.3e-17	26.19	Probable E3 ubiquitin-protein ligase RNF217 OS=Mus musculus OX=10090 GN=Rnf217 P...	[more]

BLAST of IVF0017039 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TCD1	3.7e-136	100.00	Putative E3 ubiquitin-protein ligase RNF217 isoform X2 OS=Cucumis melo var. maku...	[more]
A0A0A0KSV5	3.2e-119	87.39	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G650600 PE=3 SV=1	[more]
A0A6J1GX07	7.4e-68	54.38	probable E3 ubiquitin-protein ligase ARI10 OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A7N2LM99	7.4e-68	51.98	Uncharacterized protein OS=Quercus lobata OX=97700 PE=3 SV=1	[more]
A0A7N2R445	7.4e-68	51.98	Uncharacterized protein OS=Quercus lobata OX=97700 PE=3 SV=1	[more]

BLAST of IVF0017039 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0039247.1	1.29e-173	100.00	putative E3 ubiquitin-protein ligase RNF217 isoform X2 [Cucumis melo var. makuwa...	[more]
XP_004141646.1	2.46e-151	87.39	probable E3 ubiquitin-protein ligase ARI3 [Cucumis sativus]	[more]
KAE8649011.1	1.96e-146	87.16	hypothetical protein Csa_009107 [Cucumis sativus]	[more]
XP_022956145.1	2.50e-83	54.63	probable E3 ubiquitin-protein ligase ARI10 [Cucurbita moschata]	[more]
KAG5008957.1	3.44e-83	54.50	hypothetical protein JHK87_017472 [Glycine soja] >KAG5036743.1 hypothetical prot...	[more]

BLAST of IVF0017039 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G53690.1	7.3e-60	46.53	RING/U-box superfamily protein	[more]
AT3G14250.1	6.4e-56	40.78	RING/U-box superfamily protein	[more]
AT4G19670.1	6.4e-40	34.82	RING/U-box superfamily protein	[more]
AT4G19670.2	6.4e-40	34.82	RING/U-box superfamily protein	[more]
AT5G37560.1	3.4e-33	31.71	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002867	IBR domain	SMART	SM00647	ibrneu5	coord: 79..142 e-value: 2.3E-13 score: 60.4 coord: 156..210 e-value: 0.07 score: 14.7
IPR002867	IBR domain	PFAM	PF01485	IBR	coord: 83..142 e-value: 1.0E-10 score: 41.6 coord: 162..210 e-value: 2.3E-7 score: 30.9
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 11..58 e-value: 0.0035 score: 26.6
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 11..56 score: 10.084539
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 5..91 e-value: 2.1E-21 score: 77.7
None	No IPR available	GENE3D	2.20.25.20		coord: 97..143 e-value: 3.9E-6 score: 28.9
None	No IPR available	GENE3D	1.20.120.1750		coord: 144..221 e-value: 1.0E-14 score: 57.0
None	No IPR available	PANTHER	PTHR11685:SF309	RBR-TYPE E3 UBIQUITIN TRANSFERASE	coord: 8..206
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 5..88
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 80..147
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 156..211
IPR018957	Zinc finger, C3HC4 RING-type	PFAM	PF00097	zf-C3HC4	coord: 11..56 e-value: 1.2E-5 score: 25.0
IPR031127	E3 ubiquitin ligase RBR family	PANTHER	PTHR11685	RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING	coord: 8..206
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 29..38
IPR044066	TRIAD supradomain	PROSITE	PS51873	TRIAD	coord: 7..221 score: 25.835659

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0017039.2	IVF0017039.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032436	positive regulation of proteasomal ubiquitin-dependent protein catabolic process
biological_process	GO:0000209	protein polyubiquitination
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0000151	ubiquitin ligase complex
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0031624	ubiquitin conjugating enzyme binding
molecular_function	GO:0061630	ubiquitin protein ligase activity
molecular_function	GO:0004842	ubiquitin-protein transferase activity