IVF0016975 (gene) Melon (IVF77) v1

Overview
NameIVF0016975
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Locationchr08: 9157040 .. 9157207 (-)
RNA-Seq ExpressionIVF0016975
SyntenyIVF0016975
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACATATTGCGATGACGTTGATAACGTGGACGAGGGGGACTCCACGTACGCAACGACCATCGCTACAGAAGACATACACTACATTAAGACGACAAACGAGTGGTCTCAGTGGCACGACGAACTAATTGAATCGATGTTCACAGATTGGCAGTTGCGTAACGCTTAG

mRNA sequence

ATGACATATTGCGATGACGTTGATAACGTGGACGAGGGGGACTCCACGTACGCAACGACCATCGCTACAGAAGACATACACTACATTAAGACGACAAACGAGTGGTCTCAGTGGCACGACGAACTAATTGAATCGATGTTCACAGATTGGCAGTTGCGTAACGCTTAG

Coding sequence (CDS)

ATGACATATTGCGATGACGTTGATAACGTGGACGAGGGGGACTCCACGTACGCAACGACCATCGCTACAGAAGACATACACTACATTAAGACGACAAACGAGTGGTCTCAGTGGCACGACGAACTAATTGAATCGATGTTCACAGATTGGCAGTTGCGTAACGCTTAG

Protein sequence

MTYCDDVDNVDEGDSTYATTIATEDIHYIKTTNEWSQWHDELIESMFTDWQLRNA
Homology
BLAST of IVF0016975 vs. ExPASy TrEMBL
Match: A0A5D3DG14 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold523G00260 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.1e-24
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0

Query: 1   MTYCDDVDNVDEGDSTYATTIATEDIHYIKTTNEWSQWHDELIESMFTDWQLRNA 56
           MTYCDDVDNVDEGDSTYATTIATEDIHYIKTTNEWSQWHDELIESMFTDWQLRNA
Sbjct: 101 MTYCDDVDNVDEGDSTYATTIATEDIHYIKTTNEWSQWHDELIESMFTDWQLRNA 155

BLAST of IVF0016975 vs. ExPASy TrEMBL
Match: A0A5A7VDR4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold827G00940 PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.1e-20
Identity = 47/55 (85.45%), Postives = 54/55 (98.18%), Query Frame = 0

Query: 1   MTYCDDVDNVDEGDSTYATTIATEDIHYIKTTNEWSQWHDELIESMFTDWQLRNA 56
           MTYC+DV++VDEGDSTYATT A+EDIHYI+TTNEWSQWHDEL++SMFTDWQLRNA
Sbjct: 311 MTYCEDVNDVDEGDSTYATTTASEDIHYIETTNEWSQWHDELVKSMFTDWQLRNA 365

BLAST of IVF0016975 vs. ExPASy TrEMBL
Match: A0A5D3BAK8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold19391G00020 PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.1e-20
Identity = 47/55 (85.45%), Postives = 54/55 (98.18%), Query Frame = 0

Query: 1   MTYCDDVDNVDEGDSTYATTIATEDIHYIKTTNEWSQWHDELIESMFTDWQLRNA 56
           MTYC+DV++VDEGDSTYATT A+EDIHYI+TTNEWSQWHDEL++SMFTDWQLRNA
Sbjct: 219 MTYCEDVNDVDEGDSTYATTTASEDIHYIETTNEWSQWHDELVKSMFTDWQLRNA 273

BLAST of IVF0016975 vs. ExPASy TrEMBL
Match: A0A5D3CUG9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00180 PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.4e-20
Identity = 49/55 (89.09%), Postives = 52/55 (94.55%), Query Frame = 0

Query: 1   MTYCDDVDNVDEGDSTYATTIATEDIHYIKTTNEWSQWHDELIESMFTDWQLRNA 56
           MTYC DVD+VDEGDSTYATTIA+EDIHYI+TTNEWSQW DEL ESMFTDWQLRNA
Sbjct: 261 MTYCKDVDDVDEGDSTYATTIASEDIHYIETTNEWSQWRDELAESMFTDWQLRNA 315

BLAST of IVF0016975 vs. ExPASy TrEMBL
Match: A0A5A7TW41 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold754G00210 PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.4e-20
Identity = 49/55 (89.09%), Postives = 52/55 (94.55%), Query Frame = 0

Query: 1   MTYCDDVDNVDEGDSTYATTIATEDIHYIKTTNEWSQWHDELIESMFTDWQLRNA 56
           MTYC DVD+VDEGDSTYATTIA+EDIHYI+TTNEWSQW DEL ESMFTDWQLRNA
Sbjct: 261 MTYCKDVDDVDEGDSTYATTIASEDIHYIETTNEWSQWRDELAESMFTDWQLRNA 315

BLAST of IVF0016975 vs. NCBI nr
Match: KAA0062745.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK22544.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 120 bits (300), Expect = 5.81e-33
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0

Query: 1   MTYCDDVDNVDEGDSTYATTIATEDIHYIKTTNEWSQWHDELIESMFTDWQLRNA 55
           MTYCDDVDNVDEGDSTYATTIATEDIHYIKTTNEWSQWHDELIESMFTDWQLRNA
Sbjct: 101 MTYCDDVDNVDEGDSTYATTIATEDIHYIKTTNEWSQWHDELIESMFTDWQLRNA 155

BLAST of IVF0016975 vs. NCBI nr
Match: KAA0054051.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ96871.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 105 bits (263), Expect = 1.47e-28
Identity = 47/55 (85.45%), Postives = 51/55 (92.73%), Query Frame = 0

Query: 1  MTYCDDVDNVDEGDSTYATTIATEDIHYIKTTNEWSQWHDELIESMFTDWQLRNA 55
          MTYCDD+D+VDEGDS YATT A+EDIHYI+TTNEWSQW DEL ESMFTDWQLRNA
Sbjct: 1  MTYCDDIDDVDEGDSAYATTTASEDIHYIETTNEWSQWRDELAESMFTDWQLRNA 55

BLAST of IVF0016975 vs. NCBI nr
Match: TYJ95515.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 107 bits (268), Expect = 7.09e-27
Identity = 47/55 (85.45%), Postives = 54/55 (98.18%), Query Frame = 0

Query: 1   MTYCDDVDNVDEGDSTYATTIATEDIHYIKTTNEWSQWHDELIESMFTDWQLRNA 55
           MTYC+DV++VDEGDSTYATT A+EDIHYI+TTNEWSQWHDEL++SMFTDWQLRNA
Sbjct: 219 MTYCEDVNDVDEGDSTYATTTASEDIHYIETTNEWSQWHDELVKSMFTDWQLRNA 273

BLAST of IVF0016975 vs. NCBI nr
Match: KAA0038315.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 103 bits (257), Expect = 1.48e-26
Identity = 45/55 (81.82%), Postives = 53/55 (96.36%), Query Frame = 0

Query: 1   MTYCDDVDNVDEGDSTYATTIATEDIHYIKTTNEWSQWHDELIESMFTDWQLRNA 55
           MTYC+DVD+VDEG+STYATTIA+EDI YI+TTNEWSQW D+++ESMFTDWQLRNA
Sbjct: 91  MTYCEDVDDVDEGESTYATTIASEDIQYIETTNEWSQWRDDIVESMFTDWQLRNA 145

BLAST of IVF0016975 vs. NCBI nr
Match: TYK14046.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 107 bits (267), Expect = 2.17e-26
Identity = 49/55 (89.09%), Postives = 52/55 (94.55%), Query Frame = 0

Query: 1   MTYCDDVDNVDEGDSTYATTIATEDIHYIKTTNEWSQWHDELIESMFTDWQLRNA 55
           MTYC DVD+VDEGDSTYATTIA+EDIHYI+TTNEWSQW DEL ESMFTDWQLRNA
Sbjct: 261 MTYCKDVDDVDEGDSTYATTIASEDIHYIETTNEWSQWRDELAESMFTDWQLRNA 315

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DG142.1e-24100.00Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VDR41.1e-2085.45Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BAK81.1e-2085.45Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3CUG91.4e-2089.09Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TW411.4e-2089.09Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0062745.15.81e-33100.00retrotransposon protein [Cucumis melo var. makuwa] >TYK22544.1 retrotransposon p... [more]
KAA0054051.11.47e-2885.45retrotransposon protein [Cucumis melo var. makuwa] >TYJ96871.1 retrotransposon p... [more]
TYJ95515.17.09e-2785.45retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0038315.11.48e-2681.82retrotransposon protein [Cucumis melo var. makuwa][more]
TYK14046.12.17e-2689.09retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0016975.1IVF0016975.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016788 hydrolase activity, acting on ester bonds
molecular_function GO:0046872 metal ion binding