IVF0016968 (gene) Melon (IVF77) v1

Overview


Name	IVF0016968
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	ribosomal RNA small subunit methyltransferase NEP1-like
Location	chr10: 8741046 .. 8745923 (-)
RNA-Seq Expression	IVF0016968
Synteny	IVF0016968

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCCATACAAGTATAGACGTAATATAGTTCATGAGGATGTGAGTATAAAAAATTCTTTCAAAAGGTGAAAAGATGAAATTAATACCCTAGTTTAGAATAGTAAGGTTGAAAACCAAAAAATGGACTTGTTTATTTGTATGAATACTAAAATTCTATCCTTCCACCCGATCTAAAACATTTCCTCAAAGTTTAAAAAAAAAATTTGAATTATGTTTTCTTTTGACCTTTAATACAACTCCTAAGCCAACACTAATGTTCTTTTTTGAACAAAATATAATCTTTAATTTTTATTATGACAGGCTTTTGTCCATATCATGTATTCTCGAATTTGTATGGAGGCGGTATTCATAAGAACTGACAAAGGAATTTTCATTAAAATTGACCCTCGTACTTAAATATAATCAGTGGACGAGTTTTGTGATATGATGGGTTAGTTTTTCTTGCTCAGCAGAATACTAGTAGCTAGTTATGTAAATGGAACTAGTTCTTACAATGCTTCTATTTAAATTTCTTACATATGATTATTATAGCTCAATTGTTCCAAAAGCTTAGCACTAAAGCCAAAGGCAATCGTAGAAAACTATCGCAAGTGGTTAGAAATCTCGTGATCAAATACTTACATTTCAATTGCGTGAAGATGGGTGAGGTAATATATTTTGAAAGATTGATTAATTCATAGAAGTTTTTGTAACCTTGAATAATTGCAATAACTCAAGTCTTTCCTCAAGTTCCAAAAAGGGTTGATCCACAAGATTCTCACCTTTGTAACGTCCCGAATTTTCGAGGTAAACTTTTATCGTTTTGTGTAAATTTTTTCGGAAATTTAAAATTTTGGAGTAATTTCTCAGTTTCCTTAGAAGAGGGTAGAAAAAAAAAAATCTAGGGATATGAAATTTCTTAAATTAATATTTGTAAATTAATATAATAATAATATAATATTAATTATATTATTATTATTATTTATTATAATTTTTATATATAATTTAATATTAATATTATCATTATTATTTAATATTAATATTAATATTATCATTTATTATTATTATTATTATTATTATTATTATTATTATTATTATTTATTATAATTATTATAATTTGACATTAATATTATTATTATTATTATTTAATATTATTATTATTATTATTATTATTATTATTTGATATTATTATTAGTTAATATATATATATATATAATAATTTTTTTTAAAAACCCTAAAAGGCGCACAACACACCCCCCCCTCGCCGCTTCGACTTCACCTTCTTCTTCCTCCGTCTTCACCCAGTGAGCACAGCCGCCGCCTCCCACCATCCTTTTCCGTCACGCACGCTTCCGCCTTCGTCCGCGTCTCCGCATCTTCTTCCGTCGAGCCGCGCCCCACGTCGAAGCTTCACCTGAAATCGACGCCGCCGGCCGATTGTTGTCGTTGAGCCCCCGCGACAACCGAGCTTCTTACCGCTCCTCCATTCGACACCGGATCTGTCTCTAACTCCAATCGCAGCCTCCGGCGCTTCCTTCCCCTCATCCCGCGTGCCCGACGCAGACAGAACACCTAGGGGCTGCCTTTTACCGCCGTCGTTGTCGGAAGGAGAAAGGAGTTGAACCCGAGCCGTGAAGTGAAACCGACCCGAGCCACGAATCCGAATCGAGCGAGCCGCGAGCCGCGAGCCGAGCCGCAAGCCGAGTTGAGCCGAGCCGCGAGCCGAGCCGCAATTCGAGTTGAGCCGAGCCGCGAGCCGAGCCGCAATTCGAGTTGAGCCGAGCCGCGAGCCGAGCCATAAGCTGAGTTGAGCCGAGCCGTGAGCCGAGCCGAGCGATACAGAAAATTAGATCACGTATGCAGACCGCACAGAGTAGGCAGAAGAGTTATGCTGATGTTAGACGGAAGGATCTTGAGTTCGATGTGGGGGACAAGGTGTTCCTAAAGGTAGCACCTATGAGAGGTGTCTTACGTTTTGAAAAGAAAGGAAAGCCGAGTCCCCGTTTTGTTGAGCCGTTTGAGATTCTGGAGCGGATTGGCCCTGTAGCTTATCGCTTGGCGTTGCCACCAACACTCTCGACAGTTCATGATGTGTTCCATGTTTCTATGTTGAGGAAGTACGTGCCAAATCCATCCCATGTAGTGGATTACGAGTCACTAGAGATTGTTATTATTTATTATTATTATTATTATTATTATCATCCCATATTAATATTAATATTATCATTTATTATTATTATTATTATTATTATTATTATTATTATTATTATTTATTATAATTATTATAATTTAACATTAATATTATTATTATTATTATTTAATATTATTATTATTATTATTATTTGATATTATTATTAGTTAATATATATATAATAAATTTTTTTTAAAAACCCTAAAAGGCGCACGACACACACCCCCCCCACCGCTTCGACTTCACCTTCTTCTTCCTCCGTCTTCACCCAGCGAGCACCGCCGCCTCCCACCATCCTTTTCCGTCACGCACGCTTCCGCCTTCGTCCGCGTCTCCTCGTCTTCTTCCGTCGAGCCGCGTCCCACATCGAAGCTTCACCTGAAATCGACGCCGTCGGCCGATTGTTGTCGTTGAGCCCCGCGACAACCGAGCTTCTTACCGCTCCTCCGTTCGACACCGGATCTATCTCTAACTCCAATCGCAGCCTTCGGCGCTTCCTTCCCCTCAACCCGCGTGCCCGACGCAGACAGAACACCAAGGGGCTGCCTTCTACCACCGTCGTTGTCGGAAGGAGAAAGGAGTTGAACCCGAGCCGCGAAGTGAAGCCGACCCGAGCCACAAATTCGAATCGAGCGAGCCGCGAGCCGCGAGCCGAGTTGAGCCGAGCCGCAAGCCGAGTTGAGCCGAGCCGCAAGCCGAGTTGAGCCGAGCCACAATCCGAGTTGAGCCGAGCCGCGAGCCGAGTCGTAAGCTGAGTTGAGCCGAGCCGTGAGCCGAGCCGAGCCGAGTCGAGGGTGAGCCAAGTCGAGCCGAGCCACCTAAGCCATATTTTTTCTCCCGCCACTTCGGGTCACGGTGAGTCTTCGGTAAGGATCATTTTGGTAATTTACCCAATGTTACTATAATCGTTTCGAGTTTGAATATTGGAGTAAGACTGGGTCCCATCTTTCGTTCTTTGAAGGTAATAGGGGTTTGACGCTCAAGTTCACGGTCCCACGGCAAGTTAATTTGGAGATAGCTTTCCTTTCTTCGGGTAAGTCAACGGATGTTGCTTAGGACCATTTAAAATGACTTCCACTAGTATCCTCGTTTAAGACCCTTGTGTTTTCGTTTAGGTGGACCCGTTGCGCGTGGACTCGATCGGGGGCATAACCAAGTATCAGGTAAGGGTTTTCCTACTACTGGACCTCGGATCGAGGCTGGAAACGTAGTAATCCACAGGGGATTACACGTTAGTAACTGTACTGAATAAATGTATGTGTGTTTGACTTTTAAGTATCGTCGCTATGCTCTTGTCTGATGTAAAGGTAACGCGACCGCTAGTTGTAGCTTGTGTGCCATCGGGTGTAAGGAGTTGTTTACGGATAGACACCGATGCCGGATGTTCGGTATATTGTAGTTATGTTAATGGGCTACGTTGTGGATTGGATTGGTATGTCGATGGACCTTAAAGTTTTACGGTTAGGTTCGTGGTAGTCTTTTGTCTGGACATTGATCATGGAGTATGGTCGTGGAAGGACGGTGAGTCCGATTTTTGATTGACTAGTTGACCGGATCTAGGGATATCACAATGGTGTGTGGAGCGGAAACGCATATAGTAACTGAGGATGTAGTTGTTTAAACCTATACTATCTGACTGGCGAAGCCTATGGCAAAATTGTAATATGAATGTTGTTGGGGTATGACTGTTGTAGACGGTTTAGTATGGACTGAGGGGTAACGGTTAGCTTCGTCTATTGGGGTAGTGTACCTTACGGATATGTGCATCCTTCGGGAGCACTAGACTGATATGTGCATCCTTCGGGAGCACTAGACTGATACGTGCATTCTTCGGGAGCACTAGACTGATACGTGCATCCTTCGGGAGCACTAGACTGATATGTGCATCCCTCGGGATCACTAGACTGATAGGTGTATCTTACGGGATCATTAGACTGATACGTGCATCCTTCGGGATCACGAGACTGATATGTGCGTTCTACGGAACCACTAGACTGCTATGTAGGGTACCCCTGAATAGGAAGTTAACTGTTGTTCCCTAACGGGCCCAGTAGTGGGTCCCTTACTGGGTATATTTTATACTCACCCTTTTTCTTCTTTAACTTTGCAGGTAAGGGTACAGCGAGGGGCAGACCGACGAGGGGCAAGAAGGATGCGTGAAGGCCATATGGACGCGTCTGGTTTTTTTTATGCTTCCGCTGATGTTTTTTTTTGTTAGAATATTTGGTTTTGTGATTTTGAGTTTGATGACTTGAGTATTGCATTTGAAATTTTCGTGACAGTGATTTAAAATAGGGCCCGAAACTGCTTTTTTGTAATATTTCTAACGTTTTTAATGAATTGTAACCGGTCCGTTATGATTTTTTTATGTTTTGTGGTCGAGTCTTAGTATTGAGTAGTGACCTCGGCTTAGTCCGGAAAGTGGGGTCGTTACAACCTCAAAACGTTTAGCAACGATGTCAATGATGTCAATCTAGTATTTGTGGTAATTACTAATCAGACACTGTAAAACTTTGCAATTTCTCATATTATACATCAACTATCAAGCACTCTTTTCATTCTCATCATTTTGAGAGAAAACTAAATGATTATTATTTATTCAGATTGGAGCAATGGCTCATGGCAAAATTGACAACGAAAACATAGATGAATTGATATCAGGTTACTCTTTTGTAAGCTATTTAAATAATTGTTTCTCCCTTTAA

mRNA sequence

ATGGATCCATACAAGTATAGACGTAATATAGTTCATGAGGATGCTTTTGTCCATATCATGTATTCTCGAATTTGTATGGAGGCGGTATTCATAAGAACTGACAAAGGAATTTTCATTAAAATTGACCCTCCTCAATTGTTCCAAAAGCTTAGCACTAAAGCCAAAGGCAATCGTAGAAAACTATCGCAAGTGGTTAGAAATCTCGTGATCAAATACTTACATTTCAATTGCGTGAAGATGGGTGAGTGGGGTCGTTACAACCTCAAAACGTTTAGCAACGATGTCAATGATGTCAATCTAGTATTTGTGATTGGAGCAATGGCTCATGGCAAAATTGACAACGAAAACATAGATGAATTGATATCAGGTTACTCTTTTGTAAGCTATTTAAATAATTGTTTCTCCCTTTAA

Coding sequence (CDS)

ATGGATCCATACAAGTATAGACGTAATATAGTTCATGAGGATGCTTTTGTCCATATCATGTATTCTCGAATTTGTATGGAGGCGGTATTCATAAGAACTGACAAAGGAATTTTCATTAAAATTGACCCTCCTCAATTGTTCCAAAAGCTTAGCACTAAAGCCAAAGGCAATCGTAGAAAACTATCGCAAGTGGTTAGAAATCTCGTGATCAAATACTTACATTTCAATTGCGTGAAGATGGGTGAGTGGGGTCGTTACAACCTCAAAACGTTTAGCAACGATGTCAATGATGTCAATCTAGTATTTGTGATTGGAGCAATGGCTCATGGCAAAATTGACAACGAAAACATAGATGAATTGATATCAGGTTACTCTTTTGTAAGCTATTTAAATAATTGTTTCTCCCTTTAA

Protein sequence

MDPYKYRRNIVHEDAFVHIMYSRICMEAVFIRTDKGIFIKIDPPQLFQKLSTKAKGNRRKLSQVVRNLVIKYLHFNCVKMGEWGRYNLKTFSNDVNDVNLVFVIGAMAHGKIDNENIDELISGYSFVSYLNNCFSL

Homology

[Close]

BLAST of IVF0016968 vs. ExPASy Swiss-Prot
Match: O35130 (Ribosomal RNA small subunit methyltransferase NEP1 OS=Mus musculus OX=10090 GN=Emg1 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.9e-07
Identity = 41/147 (27.89%), Postives = 72/147 (48.98%), Query Frame = 0


Query: 2   DPYKYRRNIVHEDAFVHI--MYSRICMEAVFIRTDKGIFIKIDPP--------------- 61
           DP + R +I H+   + +    +R  +  V+I T K + I+++P                
Sbjct: 79  DPGEVRPDITHQSLLMLMDSPLNRAGLLQVYIHTQKNVLIEVNPQTRIPRTFDRFCGLMV 138

Query: 62  QLFQKLSTKAKGNRRKLSQVVRNLVIKYLHFNCVKMGEWGRYNLKTFS-NDVNDVN---- 121
           QL  KLS +A    +KL +V++N V  +    C+K+G        +FS  D++D+     
Sbjct: 139 QLLHKLSVRAADGPQKLLKVIKNPVSDHFPVGCMKIG-------TSFSVEDISDIRELVP 198

Query: 122 ----LVFVIGAMAHGKIDNENIDELIS 123
               +VFV+GA AHGK+  E  ++++S
Sbjct: 199 SSDPVVFVVGAFAHGKVSVEYTEKMVS 218

[Close]

BLAST of IVF0016968 vs. ExPASy Swiss-Prot
Match: Q92979 (Ribosomal RNA small subunit methyltransferase NEP1 OS=Homo sapiens OX=9606 GN=EMG1 PE=1 SV=4)

HSP 1 Score: 55.8 bits (133), Expect = 4.3e-07
Identity = 40/143 (27.97%), Postives = 72/143 (50.35%), Query Frame = 0


Query: 2   DPYKYRRNIVHEDAFVHI--MYSRICMEAVFIRTDKGIFIKIDPP--------------- 61
           DP + R +I H+   + +    +R  +  V+I T K + I+++P                
Sbjct: 79  DPGEARPDITHQSLLMLMDSPLNRAGLLQVYIHTQKNVLIEVNPQTRIPRTFDRFCGLMV 138

Query: 62  QLFQKLSTKAKGNRRKLSQVVRNLVIKYLHFNCVKMGEWGRYNLKTFSNDVNDV-----N 121
           QL  KLS +A    +KL +V++N V  +    C+K+G    +++   S DV ++      
Sbjct: 139 QLLHKLSVRAADGPQKLLKVIKNPVSDHFPVGCMKVGT--SFSIPVVS-DVRELVPSSDP 198

Query: 122 LVFVIGAMAHGKIDNENIDELIS 123
           +VFV+GA AHGK+  E  ++++S
Sbjct: 199 IVFVVGAFAHGKVSVEYTEKMVS 218

[Close]

BLAST of IVF0016968 vs. ExPASy TrEMBL
Match: A0A1S3BLD0 (ribosomal RNA small subunit methyltransferase NEP1-like OS=Cucumis melo OX=3656 GN=LOC103490911 PE=3 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 3.3e-34
Identity = 93/149 (62.42%), Postives = 103/149 (69.13%), Query Frame = 0


Query: 1   MDPYKYRRNIVHEDAFVHIMYSRICM----EAVFIRTDKGIFIKIDP------------- 60
           MDPYKYR +IVHE A VHIMYSRICM    +AVF+RTD+G+ IK+DP             
Sbjct: 40  MDPYKYRPDIVHE-ALVHIMYSRICMAGLVQAVFVRTDEGVLIKVDPHTRIPESLDEFCD 99

Query: 61  --PQLFQKLSTKAKGNRRKLSQVVRNLVIKYLHFNCVKMGEWG--------RYNLKTFSN 120
              QL QKLSTKAKGNR KL QVV+N VI+YL  NCVK+G           R  LKTFS 
Sbjct: 100 MMSQLLQKLSTKAKGNRGKLLQVVKNPVIQYLPVNCVKIGLSSSSKKVIEPRDYLKTFS- 159

Query: 121 DVNDVNLVFVIGAMAHGKIDNENIDELIS 123
             NDVNLVFVIGAMAHGKID+ENIDELIS
Sbjct: 160 --NDVNLVFVIGAMAHGKIDDENIDELIS 184

[Close]

BLAST of IVF0016968 vs. ExPASy TrEMBL
Match: A0A5D3D7D3 (Ribosomal RNA small subunit methyltransferase NEP1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold443G001510 PE=3 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 4.3e-34
Identity = 92/149 (61.74%), Postives = 103/149 (69.13%), Query Frame = 0


Query: 1   MDPYKYRRNIVHEDAFVHIMYSRICM----EAVFIRTDKGIFIKIDP------------- 60
           MDPYKYR +IVHE A VHIMYSRICM    +AVF+RTD+G+ IK+DP             
Sbjct: 87  MDPYKYRPDIVHE-ALVHIMYSRICMAGLVQAVFVRTDEGVLIKVDPRTRIPESLDEFCD 146

Query: 61  --PQLFQKLSTKAKGNRRKLSQVVRNLVIKYLHFNCVKMGEWG--------RYNLKTFSN 120
              QL QKLSTKAKGNR KL QVV+N VI+YL  NCVK+G           R  LKTFS 
Sbjct: 147 MMSQLLQKLSTKAKGNRGKLLQVVKNPVIQYLPVNCVKIGLSSSSKKVIEPRDYLKTFS- 206

Query: 121 DVNDVNLVFVIGAMAHGKIDNENIDELIS 123
             ND+NLVFVIGAMAHGKID+ENIDELIS
Sbjct: 207 --NDINLVFVIGAMAHGKIDDENIDELIS 231

[Close]

BLAST of IVF0016968 vs. ExPASy TrEMBL
Match: A0A0A0K3C1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G219210 PE=3 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 7.6e-31
Identity = 91/144 (63.19%), Postives = 100/144 (69.44%), Query Frame = 0


Query: 1   MDPYKYRRNIVHEDAFVHIMYSRICM----EAVFIRTDKGIFIKIDP--------PQLF- 60
           MDPYKYR +IVH  A VHIMYSRI M    +AVFIRTD+GI IK+DP         +LF 
Sbjct: 1   MDPYKYRPDIVH-GALVHIMYSRIRMAGLVQAVFIRTDEGILIKVDPRTRIPESLDELFC 60

Query: 61  QKLSTKAKGNRRKLSQVVRNLVIKYLHFNCVKMGEWG--------RYNLKTFSNDVNDVN 120
             LSTKAKGN  KL QVV+N VI+YL  NC+K+G           R  LKTFS   NDVN
Sbjct: 61  DMLSTKAKGNCGKLLQVVKNPVIQYLPVNCLKIGLSSSSKKVVEPRDYLKTFS---NDVN 120

Query: 121 LVFVIGAMAHGKIDNENIDELISG 124
           LVFVIGAMAHGKIDNENIDELISG
Sbjct: 121 LVFVIGAMAHGKIDNENIDELISG 140

[Close]

BLAST of IVF0016968 vs. ExPASy TrEMBL
Match: A0A6J1DAB0 (ribosomal RNA small subunit methyltransferase NEP1-like OS=Momordica charantia OX=3673 GN=LOC111018323 PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 4.3e-26
Identity = 79/149 (53.02%), Postives = 92/149 (61.74%), Query Frame = 0


Query: 1   MDPYKYRRNIVHEDAFVHIMYSRICM----EAVFIRTDKGIFIKIDP------------- 60
           MDPY+YR +I+HE A VHIM+SRICM    EAVFI+TD GI I++DP             
Sbjct: 87  MDPYRYRPDILHE-ALVHIMHSRICMAGIVEAVFIKTDGGILIRVDPRTRIPESLDEFCD 146

Query: 61  --PQLFQKLSTKAKGNRRKLSQVVRNLVIKYLHFNCVKMGEWG--------RYNLKTFSN 120
              QL QK STKAKG R KL Q+V+N + +YL  NCVK+G           R    TFS 
Sbjct: 147 MMSQLLQKFSTKAKGKRGKLLQLVKNPITQYLPINCVKIGLTSSSTKVVEPRDYFTTFS- 206

Query: 121 DVNDVNLVFVIGAMAHGKIDNENIDELIS 123
             NDVN VFVIGAM H KID E IDE+IS
Sbjct: 207 --NDVNFVFVIGAMGHDKIDVEGIDEVIS 231

[Close]

BLAST of IVF0016968 vs. ExPASy TrEMBL
Match: A0A315A5E9 (Ribosomal RNA small subunit methyltransferase NEP1-like OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_38503 PE=3 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 2.1e-20
Identity = 64/146 (43.84%), Postives = 94/146 (64.38%), Query Frame = 0


Query: 1   MDPYKYRRNIVHEDAFVHIMYSRIC----MEAVFIRTDKGIFIKIDP------------- 60
           +DPYKYR +IVHE A   IM +R+C    + AV+I+TD+G+ IK++P             
Sbjct: 88  LDPYKYRPDIVHE-ALRQIMDTRLCKAGRLHAVYIKTDEGVLIKVEPQATIPESLEKFCY 147

Query: 61  --PQLFQKLSTKAKGNRRKLSQVVRNLVIKYLHFNCVKMG----EWGRYNLKTFSNDVND 120
              QL QKLS K+ G R +L +VV+N + ++L  N +K+G         +L+ + +DV+D
Sbjct: 148 MMSQLLQKLSIKSTGRRGRLLRVVKNPIAQHLPANSLKIGLSMSSQKAVDLRDYVHDVSD 207

Query: 121 -VNLVFVIGAMAHGKIDNENIDELIS 123
            VNLVFV+GAMAHG+ID+EN D++IS
Sbjct: 208 NVNLVFVVGAMAHGRIDSENADDIIS 232

[Close]

BLAST of IVF0016968 vs. NCBI nr
Match: XP_008448880.1 (PREDICTED: ribosomal RNA small subunit methyltransferase NEP1-like [Cucumis melo])

HSP 1 Score: 155 bits (392), Expect = 8.57e-45
Identity = 93/149 (62.42%), Postives = 103/149 (69.13%), Query Frame = 0


Query: 1   MDPYKYRRNIVHEDAFVHIMYSRICM----EAVFIRTDKGIFIKIDP------------- 60
           MDPYKYR +IVHE A VHIMYSRICM    +AVF+RTD+G+ IK+DP             
Sbjct: 40  MDPYKYRPDIVHE-ALVHIMYSRICMAGLVQAVFVRTDEGVLIKVDPHTRIPESLDEFCD 99

Query: 61  --PQLFQKLSTKAKGNRRKLSQVVRNLVIKYLHFNCVKMGEWG--------RYNLKTFSN 120
              QL QKLSTKAKGNR KL QVV+N VI+YL  NCVK+G           R  LKTFSN
Sbjct: 100 MMSQLLQKLSTKAKGNRGKLLQVVKNPVIQYLPVNCVKIGLSSSSKKVIEPRDYLKTFSN 159

Query: 121 DVNDVNLVFVIGAMAHGKIDNENIDELIS 122
           DVN   LVFVIGAMAHGKID+ENIDELIS
Sbjct: 160 DVN---LVFVIGAMAHGKIDDENIDELIS 184

[Close]

BLAST of IVF0016968 vs. NCBI nr
Match: TYK19496.1 (ribosomal RNA small subunit methyltransferase NEP1-like [Cucumis melo var. makuwa])

HSP 1 Score: 155 bits (391), Expect = 4.59e-44
Identity = 92/149 (61.74%), Postives = 103/149 (69.13%), Query Frame = 0


Query: 1   MDPYKYRRNIVHEDAFVHIMYSRICM----EAVFIRTDKGIFIKIDP------------- 60
           MDPYKYR +IVHE A VHIMYSRICM    +AVF+RTD+G+ IK+DP             
Sbjct: 87  MDPYKYRPDIVHE-ALVHIMYSRICMAGLVQAVFVRTDEGVLIKVDPRTRIPESLDEFCD 146

Query: 61  --PQLFQKLSTKAKGNRRKLSQVVRNLVIKYLHFNCVKMGEWG--------RYNLKTFSN 120
              QL QKLSTKAKGNR KL QVV+N VI+YL  NCVK+G           R  LKTFSN
Sbjct: 147 MMSQLLQKLSTKAKGNRGKLLQVVKNPVIQYLPVNCVKIGLSSSSKKVIEPRDYLKTFSN 206

Query: 121 DVNDVNLVFVIGAMAHGKIDNENIDELIS 122
           D+N   LVFVIGAMAHGKID+ENIDELIS
Sbjct: 207 DIN---LVFVIGAMAHGKIDDENIDELIS 231

[Close]

BLAST of IVF0016968 vs. NCBI nr
Match: XP_031745076.1 (ribosomal RNA small subunit methyltransferase NEP1-like [Cucumis sativus])

HSP 1 Score: 146 bits (369), Expect = 8.48e-42
Identity = 92/150 (61.33%), Postives = 100/150 (66.67%), Query Frame = 0


Query: 1   MDPYKYRRNIVHEDAFVHIMYSRICM----EAVFIRTDKGIFIKIDP------------- 60
           MDPYKYR +IVH  A VHIMYSRI M    +AVFIRTD+GI IK+DP             
Sbjct: 1   MDPYKYRPDIVH-GALVHIMYSRIRMAGLVQAVFIRTDEGILIKVDPRTRIPESLDELFC 60

Query: 61  ---PQLFQKLSTKAKGNRRKLSQVVRNLVIKYLHFNCVKMGEWG--------RYNLKTFS 120
               QL QKLSTKAKGN  KL QVV+N VI+YL  NC+K+G           R  LKTFS
Sbjct: 61  DMVSQLLQKLSTKAKGNCGKLLQVVKNPVIQYLPVNCLKIGLSSSSKKVVEPRDYLKTFS 120

Query: 121 NDVNDVNLVFVIGAMAHGKIDNENIDELIS 122
           NDVN   LVFVIGAMAHGKIDNENIDELIS
Sbjct: 121 NDVN---LVFVIGAMAHGKIDNENIDELIS 146

[Close]

BLAST of IVF0016968 vs. NCBI nr
Match: KGN44185.1 (hypothetical protein Csa_016257 [Cucumis sativus])

HSP 1 Score: 144 bits (363), Expect = 2.62e-41
Identity = 91/144 (63.19%), Postives = 100/144 (69.44%), Query Frame = 0


Query: 1   MDPYKYRRNIVHEDAFVHIMYSRICM----EAVFIRTDKGIFIKIDP--------PQLF- 60
           MDPYKYR +IVH  A VHIMYSRI M    +AVFIRTD+GI IK+DP         +LF 
Sbjct: 1   MDPYKYRPDIVH-GALVHIMYSRIRMAGLVQAVFIRTDEGILIKVDPRTRIPESLDELFC 60

Query: 61  QKLSTKAKGNRRKLSQVVRNLVIKYLHFNCVKMGEWG--------RYNLKTFSNDVNDVN 120
             LSTKAKGN  KL QVV+N VI+YL  NC+K+G           R  LKTFSNDVN   
Sbjct: 61  DMLSTKAKGNCGKLLQVVKNPVIQYLPVNCLKIGLSSSSKKVVEPRDYLKTFSNDVN--- 120

Query: 121 LVFVIGAMAHGKIDNENIDELISG 123
           LVFVIGAMAHGKIDNENIDELISG
Sbjct: 121 LVFVIGAMAHGKIDNENIDELISG 140

[Close]

BLAST of IVF0016968 vs. NCBI nr
Match: XP_022150056.1 (ribosomal RNA small subunit methyltransferase NEP1-like [Momordica charantia] >XP_022150057.1 ribosomal RNA small subunit methyltransferase NEP1-like [Momordica charantia])

HSP 1 Score: 128 bits (322), Expect = 1.08e-33
Identity = 79/149 (53.02%), Postives = 92/149 (61.74%), Query Frame = 0


Query: 1   MDPYKYRRNIVHEDAFVHIMYSRICM----EAVFIRTDKGIFIKIDP------------- 60
           MDPY+YR +I+HE A VHIM+SRICM    EAVFI+TD GI I++DP             
Sbjct: 87  MDPYRYRPDILHE-ALVHIMHSRICMAGIVEAVFIKTDGGILIRVDPRTRIPESLDEFCD 146

Query: 61  --PQLFQKLSTKAKGNRRKLSQVVRNLVIKYLHFNCVKMGEWG--------RYNLKTFSN 120
              QL QK STKAKG R KL Q+V+N + +YL  NCVK+G           R    TFSN
Sbjct: 147 MMSQLLQKFSTKAKGKRGKLLQLVKNPITQYLPINCVKIGLTSSSTKVVEPRDYFTTFSN 206

Query: 121 DVNDVNLVFVIGAMAHGKIDNENIDELIS 122
           DVN    VFVIGAM H KID E IDE+IS
Sbjct: 207 DVN---FVFVIGAMGHDKIDVEGIDEVIS 231

[Close]

BLAST of IVF0016968 vs. TAIR 10
Match: AT3G57000.1 (nucleolar essential protein-related )

HSP 1 Score: 61.6 bits (148), Expect = 5.6e-10
Identity = 50/149 (33.56%), Postives = 78/149 (52.35%), Query Frame = 0


Query: 2   DPYKYRRNIVHEDAFVHIMYSRI----CMEAVFIRTDKGIFIKIDPP------------- 61
           +P  YR +I H+ A + I+ S +     ++AV++RT+KG+  ++ P              
Sbjct: 127 NPADYRPDITHQ-ALLMILDSPVNKAGRLKAVYVRTEKGVLFEVKPHVRIPRTFKRFAGI 186

Query: 62  --QLFQKLSTKAKGNRRKLSQVVRNLVIK-YLHFNCVKMGEWG--------RYNLKTFSN 121
             QL QKLS  A  +R KL + V+N + + +L  N  ++G           + +L T  +
Sbjct: 187 MLQLLQKLSITAVNSREKLLRCVKNPIEEHHLPVNSHRIGFSHSSEKLVNMQKHLATVCD 246

Query: 122 DVNDVNLVFVIGAMAHGKIDNENIDELIS 123
           D  D + VFV+GAMAHGKID   IDE +S
Sbjct: 247 D--DRDTVFVVGAMAHGKIDCNYIDEFVS 272

The following BLAST results are available for this feature:

BLAST of IVF0016968 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O35130	1.9e-07	27.89	Ribosomal RNA small subunit methyltransferase NEP1 OS=Mus musculus OX=10090 GN=E...	[more]
Q92979	4.3e-07	27.97	Ribosomal RNA small subunit methyltransferase NEP1 OS=Homo sapiens OX=9606 GN=EM...	[more]

BLAST of IVF0016968 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BLD0	3.3e-34	62.42	ribosomal RNA small subunit methyltransferase NEP1-like OS=Cucumis melo OX=3656 ...	[more]
A0A5D3D7D3	4.3e-34	61.74	Ribosomal RNA small subunit methyltransferase NEP1-like OS=Cucumis melo var. mak...	[more]
A0A0A0K3C1	7.6e-31	63.19	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G219210 PE=3 SV=1	[more]
A0A6J1DAB0	4.3e-26	53.02	ribosomal RNA small subunit methyltransferase NEP1-like OS=Momordica charantia O...	[more]
A0A315A5E9	2.1e-20	43.84	Ribosomal RNA small subunit methyltransferase NEP1-like OS=Prunus yedoensis var....	[more]

BLAST of IVF0016968 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008448880.1	8.57e-45	62.42	PREDICTED: ribosomal RNA small subunit methyltransferase NEP1-like [Cucumis melo...	[more]
TYK19496.1	4.59e-44	61.74	ribosomal RNA small subunit methyltransferase NEP1-like [Cucumis melo var. makuw...	[more]
XP_031745076.1	8.48e-42	61.33	ribosomal RNA small subunit methyltransferase NEP1-like [Cucumis sativus]	[more]
KGN44185.1	2.62e-41	63.19	hypothetical protein Csa_016257 [Cucumis sativus]	[more]
XP_022150056.1	1.08e-33	53.02	ribosomal RNA small subunit methyltransferase NEP1-like [Momordica charantia] >X...	[more]

BLAST of IVF0016968 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G57000.1	5.6e-10	33.56	nucleolar essential protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029026	tRNA (guanine-N1-)-methyltransferase, N-terminal	GENE3D	3.40.1280.10		coord: 1..133 e-value: 4.5E-13 score: 51.1
None	No IPR available	PANTHER	PTHR12636:SF12	EMG1/NEP1 METHYLTRANSFERASE	coord: 1..43
None	No IPR available	PANTHER	PTHR12636:SF12	EMG1/NEP1 METHYLTRANSFERASE	coord: 45..133
IPR005304	Ribosomal biogenesis, methyltransferase, EMG1/NEP1	PANTHER	PTHR12636	NEP1/MRA1	coord: 1..43
IPR005304	Ribosomal biogenesis, methyltransferase, EMG1/NEP1	PANTHER	PTHR12636	NEP1/MRA1	coord: 45..133
IPR029028	Alpha/beta knot methyltransferases	SUPERFAMILY	75217	alpha/beta knot	coord: 5..121

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0016968.2	IVF0016968.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0070475	rRNA base methylation
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0032040	small-subunit processome
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0070037	rRNA (pseudouridine) methyltransferase activity