IVF0016938 (gene) Melon (IVF77) v1

Overview


Name	IVF0016938
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	ATP-dependent helicase ATRX
Location	chr05: 15303674 .. 15304570 (+)
RNA-Seq Expression	IVF0016938
Synteny	IVF0016938

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAATAGTTGAGGTGCGCATAAGTTGGTTTGGACACTCATGGATATTTTAAAAAAAAGAAGCATGGTTATACTACACACAAATCTACATTATGTATGTATATGATTTTGGCTATCTTTTAATTGCCAGGATGGACCAGATATTCTTGTATGTGACGAGGCCCACATGATTAAGAATACCAAGGCTGATATAACACAGGCATTGAAACAAGTGAAATGCCAGAGGAGGATTGCGCTGACTGGATCACCGCTACAGAACAATCTCATGGAGTACTATTGTGTAAGTCTTTGAAACAGTTACACCAGCCGATACCTTTATGAATGATATTCTTTTTTTGACCTTATAATTGGCACAGATGGTTGATTTTGTGAGAGAAGGTTTCCTGGGAAGTAGCCATGAATTTAGGAATCGGTAAGACTCCACCTTCAGTCTTCTTTTCTTCTGAGTTCTGCCTTTCTGTCTTTATATTTCTCTTACATATTCTCTTGTGCAGCTTCCAGAACCCCATAGAGAATGGGCAGCATACTAATTCAACTCTGGATGATGTTAAAATAATGAACCAGAGGTCTCATATCCTATATGAACAGTTGAAAGGGTTTGTTCAAAGAATGGACATGACCGTGGTGAAGAAGGACTTGCCACCTAAAACTGTCTTTGTGATATCCGTAAAACTCTCTCCCTTACAGAGGAAGTTATACAAAAGATTTCTTGACGTGCATGGATTTAATAATGGCAAGGATTCTAGTGAACAGTTAAGGAAACGGAGCTTTTTTGCTGGGTACCAAGCACTGGCCCAGGTATGCTCATGACATCTGAATTTGATTTTTGAGCTGCTAATTTACATTTTGTAGCTTATATTTTATAGCATGGATGCAGCGCAGCTGGACTGGATTAG

mRNA sequence

ATGAGAATAGTTGAGGATGGACCAGATATTCTTGTATGTGACGAGGCCCACATGATTAAGAATACCAAGGCTGATATAACACAGGCATTGAAACAAGTGAAATGCCAGAGGAGGATTGCGCTGACTGGATCACCGCTACAGAACAATCTCATGGAGTACTATTGTATGGTTGATTTTGTGAGAGAAGGTTTCCTGGGAAGTAGCCATGAATTTAGGAATCGCTTCCAGAACCCCATAGAGAATGGGCAGCATACTAATTCAACTCTGGATGATGTTAAAATAATGAACCAGAGGTCTCATATCCTATATGAACAGTTGAAAGGGTTTGTTCAAAGAATGGACATGACCGTGGTGAAGAAGGACTTGCCACCTAAAACTGTCTTTGTGATATCCGTAAAACTCTCTCCCTTACAGAGGAAGTTATACAAAAGATTTCTTGACGTGCATGGATTTAATAATGGCAAGGATTCTAGTGAACAGTTAAGGAAACGGAGCTTTTTTGCTGGGTACCAAGCACTGGCCCAGCATGGATGCAGCGCAGCTGGACTGGATTAG

Coding sequence (CDS)

ATGAGAATAGTTGAGGATGGACCAGATATTCTTGTATGTGACGAGGCCCACATGATTAAGAATACCAAGGCTGATATAACACAGGCATTGAAACAAGTGAAATGCCAGAGGAGGATTGCGCTGACTGGATCACCGCTACAGAACAATCTCATGGAGTACTATTGTATGGTTGATTTTGTGAGAGAAGGTTTCCTGGGAAGTAGCCATGAATTTAGGAATCGCTTCCAGAACCCCATAGAGAATGGGCAGCATACTAATTCAACTCTGGATGATGTTAAAATAATGAACCAGAGGTCTCATATCCTATATGAACAGTTGAAAGGGTTTGTTCAAAGAATGGACATGACCGTGGTGAAGAAGGACTTGCCACCTAAAACTGTCTTTGTGATATCCGTAAAACTCTCTCCCTTACAGAGGAAGTTATACAAAAGATTTCTTGACGTGCATGGATTTAATAATGGCAAGGATTCTAGTGAACAGTTAAGGAAACGGAGCTTTTTTGCTGGGTACCAAGCACTGGCCCAGCATGGATGCAGCGCAGCTGGACTGGATTAG

Protein sequence

MRIVEDGPDILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMTVVKKDLPPKTVFVISVKLSPLQRKLYKRFLDVHGFNNGKDSSEQLRKRSFFAGYQALAQHGCSAAGLD

Homology

[Close]

BLAST of IVF0016938 vs. ExPASy Swiss-Prot
Match: F4HW51 (Protein CHROMATIN REMODELING 20 OS=Arabidopsis thaliana OX=3702 GN=ATRX PE=2 SV=2)

HSP 1 Score: 291.2 bits (744), Expect = 8.2e-78
Identity = 146/172 (84.88%), Postives = 160/172 (93.02%), Query Frame = 0


Query: 4    VEDGPDILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG 63
            + DGPDILVCDEAH+IKNTKAD TQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG
Sbjct: 865  LRDGPDILVCDEAHIIKNTKADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG 924

Query: 64   FLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMTVVKKDLP 123
            FLGSS EFRNRFQNPIENGQH NST +DVKIMNQRSHILYEQLKGFVQRMDM VVKKDLP
Sbjct: 925  FLGSSPEFRNRFQNPIENGQHMNSTAEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLP 984

Query: 124  PKTVFVISVKLSPLQRKLYKRFLDVHGFNNGKDSSEQLRKRSFFAGYQALAQ 176
            PKTVFVISVKLSPLQR LY+RFL+++GF++G+ + E++RK +FFA YQ LAQ
Sbjct: 985  PKTVFVISVKLSPLQRILYQRFLELYGFSDGR-TDERMRK-NFFAAYQVLAQ 1034

[Close]

BLAST of IVF0016938 vs. ExPASy Swiss-Prot
Match: Q61687 (Transcriptional regulator ATRX OS=Mus musculus OX=10090 GN=Atrx PE=1 SV=3)

HSP 1 Score: 174.9 bits (442), Expect = 8.6e-43
Identity = 83/174 (47.70%), Postives = 123/174 (70.69%), Query Frame = 0


Query: 3    IVEDGPDILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVRE 62
            +V+ GPD +VCDE H++KN  + +++A+  +K +RRI LTG+PLQNNL+EY+CMV+F++E
Sbjct: 1693 LVDPGPDFVVCDEGHILKNEASAVSKAMNSIKSRRRIILTGTPLQNNLIEYHCMVNFIKE 1752

Query: 63   GFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMTVVKKDL 122
              LGS  EFRNRF NPI+NGQ  +ST+ DV++M +R+HILYE L G VQR D T + K L
Sbjct: 1753 NLLGSIKEFRNRFINPIQNGQCADSTMVDVRVMKKRAHILYEMLAGCVQRKDYTALTKFL 1812

Query: 123  PPKTVFVISVKLSPLQRKLYKRFLD-VHGFNNGKDSSEQLRKRSFFAGYQALAQ 176
            PPK  +V++V+++ +Q KLY+ +LD + G  N  +          F  +Q L++
Sbjct: 1813 PPKHEYVLAVRMTAIQCKLYQYYLDHLTGVGNSTEGGRGKAGAKLFQDFQMLSR 1866

[Close]

BLAST of IVF0016938 vs. ExPASy Swiss-Prot
Match: P46100 (Transcriptional regulator ATRX OS=Homo sapiens OX=9606 GN=ATRX PE=1 SV=5)

HSP 1 Score: 174.1 bits (440), Expect = 1.5e-42
Identity = 82/174 (47.13%), Postives = 123/174 (70.69%), Query Frame = 0


Query: 3    IVEDGPDILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVRE 62
            +V+ GPD +VCDE H++KN  + +++A+  ++ +RRI LTG+PLQNNL+EY+CMV+F++E
Sbjct: 1708 LVDPGPDFVVCDEGHILKNEASAVSKAMNSIRSRRRIILTGTPLQNNLIEYHCMVNFIKE 1767

Query: 63   GFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMTVVKKDL 122
              LGS  EFRNRF NPI+NGQ  +ST+ DV++M +R+HILYE L G VQR D T + K L
Sbjct: 1768 NLLGSIKEFRNRFINPIQNGQCADSTMVDVRVMKKRAHILYEMLAGCVQRKDYTALTKFL 1827

Query: 123  PPKTVFVISVKLSPLQRKLYKRFLD-VHGFNNGKDSSEQLRKRSFFAGYQALAQ 176
            PPK  +V++V+++ +Q KLY+ +LD + G  N  +          F  +Q L++
Sbjct: 1828 PPKHEYVLAVRMTSIQCKLYQYYLDHLTGVGNNSEGGRGKAGAKLFQDFQMLSR 1881

[Close]

BLAST of IVF0016938 vs. ExPASy Swiss-Prot
Match: Q7YQM4 (Transcriptional regulator ATRX OS=Pan troglodytes OX=9598 GN=ATRX PE=2 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 1.5e-42
Identity = 82/174 (47.13%), Postives = 123/174 (70.69%), Query Frame = 0


Query: 3    IVEDGPDILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVRE 62
            +V+ GPD +VCDE H++KN  + +++A+  ++ +RRI LTG+PLQNNL+EY+CMV+F++E
Sbjct: 1708 LVDPGPDFVVCDEGHILKNEASAVSKAMNSIRSRRRIILTGTPLQNNLIEYHCMVNFIKE 1767

Query: 63   GFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMTVVKKDL 122
              LGS  EFRNRF NPI+NGQ  +ST+ DV++M +R+HILYE L G VQR D T + K L
Sbjct: 1768 NLLGSIKEFRNRFINPIQNGQCADSTMVDVRVMKKRAHILYEMLAGCVQRKDYTALTKFL 1827

Query: 123  PPKTVFVISVKLSPLQRKLYKRFLD-VHGFNNGKDSSEQLRKRSFFAGYQALAQ 176
            PPK  +V++V+++ +Q KLY+ +LD + G  N  +          F  +Q L++
Sbjct: 1828 PPKHEYVLAVRMTSIQCKLYQYYLDHLTGVGNNSEGGRGKAGAKLFQDFQMLSR 1881

[Close]

BLAST of IVF0016938 vs. ExPASy Swiss-Prot
Match: Q7YQM3 (Transcriptional regulator ATRX OS=Pongo pygmaeus OX=9600 GN=ATRX PE=2 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 1.5e-42
Identity = 82/174 (47.13%), Postives = 123/174 (70.69%), Query Frame = 0


Query: 3    IVEDGPDILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVRE 62
            +V+ GPD +VCDE H++KN  + +++A+  ++ +RRI LTG+PLQNNL+EY+CMV+F++E
Sbjct: 1708 LVDPGPDFVVCDEGHILKNEASAVSKAMNSIRSRRRIILTGTPLQNNLIEYHCMVNFIKE 1767

Query: 63   GFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMTVVKKDL 122
              LGS  EFRNRF NPI+NGQ  +ST+ DV++M +R+HILYE L G VQR D T + K L
Sbjct: 1768 NLLGSIKEFRNRFINPIQNGQCADSTMVDVRVMKKRAHILYEMLAGCVQRKDYTALTKFL 1827

Query: 123  PPKTVFVISVKLSPLQRKLYKRFLD-VHGFNNGKDSSEQLRKRSFFAGYQALAQ 176
            PPK  +V++V+++ +Q KLY+ +LD + G  N  +          F  +Q L++
Sbjct: 1828 PPKHEYVLAVRMTSIQCKLYQYYLDHLTGVGNNSEGGRGKAGAKLFQDFQMLSR 1881

[Close]

BLAST of IVF0016938 vs. ExPASy TrEMBL
Match: A0A1S3B502 (ATP-dependent helicase ATRX OS=Cucumis melo OX=3656 GN=LOC103485842 PE=3 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 6.1e-92
Identity = 171/173 (98.84%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 3   IVEDGPDILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVRE 62
           I++DGPDILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVRE
Sbjct: 768 ILQDGPDILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVRE 827

Query: 63  GFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMTVVKKDL 122
           GFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMTVVKKDL
Sbjct: 828 GFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMTVVKKDL 887

Query: 123 PPKTVFVISVKLSPLQRKLYKRFLDVHGFNNGKDSSEQLRKRSFFAGYQALAQ 176
           PPKTVFVISVKLSPLQRKLYKRFLDVHGFNNGKDSSEQLRKRSFFAGYQALAQ
Sbjct: 888 PPKTVFVISVKLSPLQRKLYKRFLDVHGFNNGKDSSEQLRKRSFFAGYQALAQ 940

[Close]

BLAST of IVF0016938 vs. ExPASy TrEMBL
Match: A0A1S3B4Z9 (ATP-dependent helicase ATRX OS=Cucumis melo OX=3656 GN=LOC103485842 PE=3 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 6.1e-92
Identity = 171/173 (98.84%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 3    IVEDGPDILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVRE 62
            I++DGPDILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVRE
Sbjct: 866  ILQDGPDILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVRE 925

Query: 63   GFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMTVVKKDL 122
            GFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMTVVKKDL
Sbjct: 926  GFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMTVVKKDL 985

Query: 123  PPKTVFVISVKLSPLQRKLYKRFLDVHGFNNGKDSSEQLRKRSFFAGYQALAQ 176
            PPKTVFVISVKLSPLQRKLYKRFLDVHGFNNGKDSSEQLRKRSFFAGYQALAQ
Sbjct: 986  PPKTVFVISVKLSPLQRKLYKRFLDVHGFNNGKDSSEQLRKRSFFAGYQALAQ 1038

[Close]

BLAST of IVF0016938 vs. ExPASy TrEMBL
Match: A0A5D3BHT1 (Protein CHROMATIN REMODELING 20 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold429G00030 PE=3 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 6.1e-92
Identity = 171/173 (98.84%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 3   IVEDGPDILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVRE 62
           I++DGPDILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVRE
Sbjct: 199 ILQDGPDILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVRE 258

Query: 63  GFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMTVVKKDL 122
           GFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMTVVKKDL
Sbjct: 259 GFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMTVVKKDL 318

Query: 123 PPKTVFVISVKLSPLQRKLYKRFLDVHGFNNGKDSSEQLRKRSFFAGYQALAQ 176
           PPKTVFVISVKLSPLQRKLYKRFLDVHGFNNGKDSSEQLRKRSFFAGYQALAQ
Sbjct: 319 PPKTVFVISVKLSPLQRKLYKRFLDVHGFNNGKDSSEQLRKRSFFAGYQALAQ 371

[Close]

BLAST of IVF0016938 vs. ExPASy TrEMBL
Match: A0A1S3B498 (ATP-dependent helicase ATRX OS=Cucumis melo OX=3656 GN=LOC103485842 PE=3 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 6.1e-92
Identity = 171/173 (98.84%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 3   IVEDGPDILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVRE 62
           I++DGPDILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVRE
Sbjct: 759 ILQDGPDILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVRE 818

Query: 63  GFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMTVVKKDL 122
           GFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMTVVKKDL
Sbjct: 819 GFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMTVVKKDL 878

Query: 123 PPKTVFVISVKLSPLQRKLYKRFLDVHGFNNGKDSSEQLRKRSFFAGYQALAQ 176
           PPKTVFVISVKLSPLQRKLYKRFLDVHGFNNGKDSSEQLRKRSFFAGYQALAQ
Sbjct: 879 PPKTVFVISVKLSPLQRKLYKRFLDVHGFNNGKDSSEQLRKRSFFAGYQALAQ 931

[Close]

BLAST of IVF0016938 vs. ExPASy TrEMBL
Match: A0A1S3B484 (ATP-dependent helicase ATRX OS=Cucumis melo OX=3656 GN=LOC103485842 PE=3 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 6.1e-92
Identity = 171/173 (98.84%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 3    IVEDGPDILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVRE 62
            I++DGPDILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVRE
Sbjct: 860  ILQDGPDILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVRE 919

Query: 63   GFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMTVVKKDL 122
            GFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMTVVKKDL
Sbjct: 920  GFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMTVVKKDL 979

Query: 123  PPKTVFVISVKLSPLQRKLYKRFLDVHGFNNGKDSSEQLRKRSFFAGYQALAQ 176
            PPKTVFVISVKLSPLQRKLYKRFLDVHGFNNGKDSSEQLRKRSFFAGYQALAQ
Sbjct: 980  PPKTVFVISVKLSPLQRKLYKRFLDVHGFNNGKDSSEQLRKRSFFAGYQALAQ 1032

[Close]

BLAST of IVF0016938 vs. NCBI nr
Match: TYJ98677.1 (protein CHROMATIN REMODELING 20 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 348 bits (893), Expect = 2.94e-112
Identity = 171/173 (98.84%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 3   IVEDGPDILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVRE 62
           I++DGPDILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVRE
Sbjct: 199 ILQDGPDILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVRE 258

Query: 63  GFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMTVVKKDL 122
           GFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMTVVKKDL
Sbjct: 259 GFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMTVVKKDL 318

Query: 123 PPKTVFVISVKLSPLQRKLYKRFLDVHGFNNGKDSSEQLRKRSFFAGYQALAQ 175
           PPKTVFVISVKLSPLQRKLYKRFLDVHGFNNGKDSSEQLRKRSFFAGYQALAQ
Sbjct: 319 PPKTVFVISVKLSPLQRKLYKRFLDVHGFNNGKDSSEQLRKRSFFAGYQALAQ 371

[Close]

BLAST of IVF0016938 vs. NCBI nr
Match: XP_022144469.1 (protein CHROMATIN REMODELING 20-like [Momordica charantia])

HSP 1 Score: 347 bits (889), Expect = 1.23e-109
Identity = 170/172 (98.84%), Postives = 172/172 (100.00%), Query Frame = 0


Query: 4    VEDGPDILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG 63
            ++DGPDILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG
Sbjct: 872  LQDGPDILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG 931

Query: 64   FLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMTVVKKDLP 123
            FLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMTVVKKDLP
Sbjct: 932  FLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMTVVKKDLP 991

Query: 124  PKTVFVISVKLSPLQRKLYKRFLDVHGFNNGKDSSEQLRKRSFFAGYQALAQ 175
            PKTVFVISVKLSPLQRKLYKRFLDVHGFNNGKDSSEQLRKRSFFAGYQALAQ
Sbjct: 992  PKTVFVISVKLSPLQRKLYKRFLDVHGFNNGKDSSEQLRKRSFFAGYQALAQ 1043

[Close]

BLAST of IVF0016938 vs. NCBI nr
Match: XP_011649020.1 (protein CHROMATIN REMODELING 20 isoform X5 [Cucumis sativus])

HSP 1 Score: 348 bits (894), Expect = 1.60e-108
Identity = 171/174 (98.28%), Postives = 173/174 (99.43%), Query Frame = 0


Query: 2   RIVEDGPDILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVR 61
            I++DGPDILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVR
Sbjct: 758 HILQDGPDILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVR 817

Query: 62  EGFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMTVVKKD 121
           EGFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMTVVKKD
Sbjct: 818 EGFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMTVVKKD 877

Query: 122 LPPKTVFVISVKLSPLQRKLYKRFLDVHGFNNGKDSSEQLRKRSFFAGYQALAQ 175
           LPPKTVFVISVKLSPLQRKLYKRFLDVHGFNNGKDSSEQLRKRSFFAGYQALAQ
Sbjct: 878 LPPKTVFVISVKLSPLQRKLYKRFLDVHGFNNGKDSSEQLRKRSFFAGYQALAQ 931

[Close]

BLAST of IVF0016938 vs. NCBI nr
Match: XP_022149939.1 (protein CHROMATIN REMODELING 20-like [Momordica charantia])

HSP 1 Score: 347 bits (889), Expect = 1.66e-108
Identity = 170/172 (98.84%), Postives = 172/172 (100.00%), Query Frame = 0


Query: 4   VEDGPDILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG 63
           ++DGPDILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG
Sbjct: 614 LQDGPDILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG 673

Query: 64  FLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMTVVKKDLP 123
           FLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMTVVKKDLP
Sbjct: 674 FLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMTVVKKDLP 733

Query: 124 PKTVFVISVKLSPLQRKLYKRFLDVHGFNNGKDSSEQLRKRSFFAGYQALAQ 175
           PKTVFVISVKLSPLQRKLYKRFLDVHGFNNGKDSSEQLRKRSFFAGYQALAQ
Sbjct: 734 PKTVFVISVKLSPLQRKLYKRFLDVHGFNNGKDSSEQLRKRSFFAGYQALAQ 785

[Close]

BLAST of IVF0016938 vs. NCBI nr
Match: XP_031736982.1 (protein CHROMATIN REMODELING 20 isoform X4 [Cucumis sativus])

HSP 1 Score: 348 bits (894), Expect = 1.74e-108
Identity = 171/174 (98.28%), Postives = 173/174 (99.43%), Query Frame = 0


Query: 2   RIVEDGPDILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVR 61
            I++DGPDILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVR
Sbjct: 767 HILQDGPDILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVR 826

Query: 62  EGFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMTVVKKD 121
           EGFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMTVVKKD
Sbjct: 827 EGFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMTVVKKD 886

Query: 122 LPPKTVFVISVKLSPLQRKLYKRFLDVHGFNNGKDSSEQLRKRSFFAGYQALAQ 175
           LPPKTVFVISVKLSPLQRKLYKRFLDVHGFNNGKDSSEQLRKRSFFAGYQALAQ
Sbjct: 887 LPPKTVFVISVKLSPLQRKLYKRFLDVHGFNNGKDSSEQLRKRSFFAGYQALAQ 940

[Close]

BLAST of IVF0016938 vs. TAIR 10
Match: AT1G08600.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 291.2 bits (744), Expect = 5.8e-79
Identity = 146/172 (84.88%), Postives = 160/172 (93.02%), Query Frame = 0


Query: 4    VEDGPDILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG 63
            + DGPDILVCDEAH+IKNTKAD TQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG
Sbjct: 844  LRDGPDILVCDEAHIIKNTKADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG 903

Query: 64   FLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMTVVKKDLP 123
            FLGSS EFRNRFQNPIENGQH NST +DVKIMNQRSHILYEQLKGFVQRMDM VVKKDLP
Sbjct: 904  FLGSSPEFRNRFQNPIENGQHMNSTAEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLP 963

Query: 124  PKTVFVISVKLSPLQRKLYKRFLDVHGFNNGKDSSEQLRKRSFFAGYQALAQ 176
            PKTVFVISVKLSPLQR LY+RFL+++GF++G+ + E++RK +FFA YQ LAQ
Sbjct: 964  PKTVFVISVKLSPLQRILYQRFLELYGFSDGR-TDERMRK-NFFAAYQVLAQ 1013

[Close]

BLAST of IVF0016938 vs. TAIR 10
Match: AT1G08600.3 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 291.2 bits (744), Expect = 5.8e-79
Identity = 146/172 (84.88%), Postives = 160/172 (93.02%), Query Frame = 0


Query: 4    VEDGPDILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG 63
            + DGPDILVCDEAH+IKNTKAD TQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG
Sbjct: 865  LRDGPDILVCDEAHIIKNTKADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG 924

Query: 64   FLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMTVVKKDLP 123
            FLGSS EFRNRFQNPIENGQH NST +DVKIMNQRSHILYEQLKGFVQRMDM VVKKDLP
Sbjct: 925  FLGSSPEFRNRFQNPIENGQHMNSTAEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLP 984

Query: 124  PKTVFVISVKLSPLQRKLYKRFLDVHGFNNGKDSSEQLRKRSFFAGYQALAQ 176
            PKTVFVISVKLSPLQR LY+RFL+++GF++G+ + E++RK +FFA YQ LAQ
Sbjct: 985  PKTVFVISVKLSPLQRILYQRFLELYGFSDGR-TDERMRK-NFFAAYQVLAQ 1034

[Close]

BLAST of IVF0016938 vs. TAIR 10
Match: AT1G08600.4 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 291.2 bits (744), Expect = 5.8e-79
Identity = 146/172 (84.88%), Postives = 160/172 (93.02%), Query Frame = 0


Query: 4    VEDGPDILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG 63
            + DGPDILVCDEAH+IKNTKAD TQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG
Sbjct: 865  LRDGPDILVCDEAHIIKNTKADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG 924

Query: 64   FLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMTVVKKDLP 123
            FLGSS EFRNRFQNPIENGQH NST +DVKIMNQRSHILYEQLKGFVQRMDM VVKKDLP
Sbjct: 925  FLGSSPEFRNRFQNPIENGQHMNSTAEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLP 984

Query: 124  PKTVFVISVKLSPLQRKLYKRFLDVHGFNNGKDSSEQLRKRSFFAGYQALAQ 176
            PKTVFVISVKLSPLQR LY+RFL+++GF++G+ + E++RK +FFA YQ LAQ
Sbjct: 985  PKTVFVISVKLSPLQRILYQRFLELYGFSDGR-TDERMRK-NFFAAYQVLAQ 1034

[Close]

BLAST of IVF0016938 vs. TAIR 10
Match: AT1G08600.2 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 291.2 bits (744), Expect = 5.8e-79
Identity = 146/172 (84.88%), Postives = 160/172 (93.02%), Query Frame = 0


Query: 4    VEDGPDILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG 63
            + DGPDILVCDEAH+IKNTKAD TQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG
Sbjct: 865  LRDGPDILVCDEAHIIKNTKADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG 924

Query: 64   FLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMTVVKKDLP 123
            FLGSS EFRNRFQNPIENGQH NST +DVKIMNQRSHILYEQLKGFVQRMDM VVKKDLP
Sbjct: 925  FLGSSPEFRNRFQNPIENGQHMNSTAEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLP 984

Query: 124  PKTVFVISVKLSPLQRKLYKRFLDVHGFNNGKDSSEQLRKRSFFAGYQALAQ 176
            PKTVFVISVKLSPLQR LY+RFL+++GF++G+ + E++RK +FFA YQ LAQ
Sbjct: 985  PKTVFVISVKLSPLQRILYQRFLELYGFSDGR-TDERMRK-NFFAAYQVLAQ 1034

[Close]

BLAST of IVF0016938 vs. TAIR 10
Match: AT3G19210.1 (homolog of RAD54 )

HSP 1 Score: 107.1 bits (266), Expect = 1.6e-23
Identity = 53/169 (31.36%), Postives = 94/169 (55.62%), Query Frame = 0


Query: 9   DILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSS 68
           D+L+CDEAH +KN +    +AL  + C+RR+ L+G+P+QN+L E++ MV+F   G LG +
Sbjct: 317 DLLICDEAHRLKNDQTLTNRALASLTCKRRVLLSGTPMQNDLEEFFAMVNFTNPGSLGDA 376

Query: 69  HEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMTVVKKDLPPKTVF 128
             FR+ ++ PI  G+   +T ++  +   RS  L  ++  F+ R    ++   LPPK + 
Sbjct: 377 AHFRHYYEAPIICGREPTATEEEKNLAADRSAELSSKVNQFILRRTNALLSNHLPPKIIE 436

Query: 129 VISVKLSPLQRKLYKRFLDVHGFNNG-KDSSEQLRKRSFFAGYQALAQH 177
           V+  K++ LQ  LY  F+          D+++Q +  ++    + L  H
Sbjct: 437 VVCCKMTTLQSTLYNHFISSKNLKRALADNAKQTKVLAYITALKKLCNH 485

The following BLAST results are available for this feature:

BLAST of IVF0016938 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4HW51	8.2e-78	84.88	Protein CHROMATIN REMODELING 20 OS=Arabidopsis thaliana OX=3702 GN=ATRX PE=2 SV=...	[more]
Q61687	8.6e-43	47.70	Transcriptional regulator ATRX OS=Mus musculus OX=10090 GN=Atrx PE=1 SV=3	[more]
P46100	1.5e-42	47.13	Transcriptional regulator ATRX OS=Homo sapiens OX=9606 GN=ATRX PE=1 SV=5	[more]
Q7YQM4	1.5e-42	47.13	Transcriptional regulator ATRX OS=Pan troglodytes OX=9598 GN=ATRX PE=2 SV=1	[more]
Q7YQM3	1.5e-42	47.13	Transcriptional regulator ATRX OS=Pongo pygmaeus OX=9600 GN=ATRX PE=2 SV=1	[more]

BLAST of IVF0016938 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B502	6.1e-92	98.84	ATP-dependent helicase ATRX OS=Cucumis melo OX=3656 GN=LOC103485842 PE=3 SV=1	[more]
A0A1S3B4Z9	6.1e-92	98.84	ATP-dependent helicase ATRX OS=Cucumis melo OX=3656 GN=LOC103485842 PE=3 SV=1	[more]
A0A5D3BHT1	6.1e-92	98.84	Protein CHROMATIN REMODELING 20 isoform X1 OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A1S3B498	6.1e-92	98.84	ATP-dependent helicase ATRX OS=Cucumis melo OX=3656 GN=LOC103485842 PE=3 SV=1	[more]
A0A1S3B484	6.1e-92	98.84	ATP-dependent helicase ATRX OS=Cucumis melo OX=3656 GN=LOC103485842 PE=3 SV=1	[more]

BLAST of IVF0016938 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ98677.1	2.94e-112	98.84	protein CHROMATIN REMODELING 20 isoform X1 [Cucumis melo var. makuwa]	[more]
XP_022144469.1	1.23e-109	98.84	protein CHROMATIN REMODELING 20-like [Momordica charantia]	[more]
XP_011649020.1	1.60e-108	98.28	protein CHROMATIN REMODELING 20 isoform X5 [Cucumis sativus]	[more]
XP_022149939.1	1.66e-108	98.84	protein CHROMATIN REMODELING 20-like [Momordica charantia]	[more]
XP_031736982.1	1.74e-108	98.28	protein CHROMATIN REMODELING 20 isoform X4 [Cucumis sativus]	[more]

BLAST of IVF0016938 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G08600.1	5.8e-79	84.88	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT1G08600.3	5.8e-79	84.88	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT1G08600.4	5.8e-79	84.88	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT1G08600.2	5.8e-79	84.88	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT3G19210.1	1.6e-23	31.36	homolog of RAD54	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 184..184
None	No IPR available	PANTHER	PTHR45797:SF1	RAD54-LIKE	coord: 4..175
IPR000330	SNF2, N-terminal	PFAM	PF00176	SNF2_N	coord: 9..149 e-value: 8.0E-33 score: 113.6
IPR038718	SNF2-like, N-terminal domain superfamily	GENE3D	3.40.50.10810		coord: 3..112 e-value: 1.4E-37 score: 130.8
IPR044574	ATPase ARIP4-like	PANTHER	PTHR45797	RAD54-LIKE	coord: 4..175
IPR014001	Helicase superfamily 1/2, ATP-binding domain	PROSITE	PS51192	HELICASE_ATP_BIND_1	coord: 1..63 score: 9.591124
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 6..112

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0016938.2	IVF0016938.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0000781	chromosome, telomeric region
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0140658	ATP-dependent chromatin remodeler activity
molecular_function	GO:0016887	ATP hydrolysis activity
molecular_function	GO:0046872	metal ion binding