IVF0016856 (gene) Melon (IVF77) v1

Overview
NameIVF0016856
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionChorein_N domain-containing protein
Locationchr02: 9421336 .. 9428886 (-)
RNA-Seq ExpressionIVF0016856
SyntenyIVF0016856
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTGCGCTTGAAACCTCTAGAGAAGCCAAAGAGACGGACGAAATAAAATAGCGGCAAAATTGGCGAGAGAGATATAGAAAGAATGATTCGACGGAGCCGGCGAGATTGAGCCAGAGCTCGAGAGAGATTGAATGAATCGGTGAGAGCATGATTGATTGAGGACGAGATTCAGGGAGAGAAGTAGAGACGGTTCGTGTTCTTCAGTCAAATAATCCCAGACTAACCTGCTAAAAAACCCAACAATAATCAGATGAACTTAGACGGGGTTACTTGTTGTTGGTAGTGTTTTTAGGGAGAATATCGTGTGAGAATGTTTGAAGGACTCGTTGGACAGTTGCTTGTGGGTTATTTGGGCCGATATGTCAAGGATATTCAGAAGGAGAAGCTAAAGATTACATTCTGGAACGGTTTGTTCATCTGATTGTACTCTATGAACAATTTTAGCTTTGTTTGGATTGTCTTTTTATTTGTTGAACTAGTTAAGTAGCTTCGATGTTGTCATCGTCTCAAACTGATGCAAATACTTCCTTGTGCCCTCATATAATGATTATCGGACTGCGGTTCATCGCTATCTTGAATATGATCATTGGACAATTGGGTCGCCGCTTTTCTTTACATCGAACTAAGCCATAGCATAAACTGCCATGCCCGACGCTACTATTTCCCTTATACCACTCATCTTATATTTGGAAAATAAAGTCTTGTCTTAATATTTATTCATTAGGATTGGTCCTGCCTATCAAACAGCGAAAATTCTACATTCCTCTTCGTCAATTGATCTTCACGTCTAGTTTATTTTCATCACTCTTCCTCTGTAATTAAAGGATACCATGGTTGCTTCCTCTCACTTTCTTATTAGTAAGCGACTCTGGCGCCGTTTGGATAGAGCCTTCCAAAAGAACAAGTTCGACGGTGCTCAAACAGAAACTTCAAACCTTACTAACTTCTCTATATTTCTTCACAACTCTAAAATTTCTACTATTTCACTCCAGACAAGTACGCCGCAAAATAGCTTGAATATTTTGATCTTGTTGTTAGAAAGAGGGTCAAAGGATGGTTGATAGCTAAGTTCAAGAATCTGGTTTTTGGGTTCTTCAGAATTCAAGCTGTCCTAGTAGAAGTCGTTCTTCATTTGGGTTATGATCTGAGAGTCTTCTGGTGTTCCCTTTCCAAATTTTATTGCAGATTACTTGTTAGACGTTTAATCTGAAATGTTTTATCTTCTCTACTATTATTTGAAATCTCGGTCTAGTTTTGTTTTTCTCTTCTTGTACCGGCAAGCTTTTGGTAGCTTTATGTTTTGTATCATCTTGAGCATTAGTCTCATTACATTATTTTAATTTGAATAAAAAGTCATCTTTTAGTTTCATCAAAAAAGAAGATAGGTGTATCTGTTTACATTGAGGATTCTTTTTGCTGGTAGACTTTTATAAACATTTGCAACTTTTCTTCCTATAAATGAAATTAACTTGATATGAAAAATTGCTCAAAATGGTTGCACATTCTATATTATATCTATTATTTTGAATTTTCTATATCAATCAGTCCTAAGAGGCACACTTACTACTTATGCAGAGGAAATTTTATTGGAGAATGTTGAGCTCATTCTAGAGGCCTTTGATTATCTTCAATTGCCATTCGCCCTAAAGGAAGGTATTTTTTAAATTCATAGGCAAAAATAGAAAAGCAGAATGTGTTTGGTATTGATATGAACATGTTTTGCTTTTTCTTTTCTTTTTCCATTCACTTATTAGGAATGTACAAGCTTTGCTTAATGGATTATTTTCTGCATTTTGTTATTAGCTTTTTTAATTCATCTTCCAATTAATTGGCTCAACTTAACATTGAGATATTGCAACCTTTTATTCCTCTTTTTTTGGTGCAATTACTTTTGCTTGATCAACATTTGTTTTCTCAGTATACTTAAGGTTTGAACCTATACTCTGAAATTCCATTTCACCTGCACCATAACCTCTAGGCCAACCACTATTAGCTTTGAAAATTTGTATTCAAAGTACAAATTTGTATTCTCTTAGAATCACATGACCACATTTCCTACTTTTGTGATTGTGCATATCATTTTGTTTTTACTCCTTGTGGAGTTTGTTTCTCTTGAACATTAGTCTCCTTTCATTATATGACTGAAAAAGGTTCGTTTCCTATTAAGAAATACATGTGATCAATCAAGAAAATAACATCAGAAGTTCTCTTTTATGGTTAACTACCTTTAATTTGCAGATACCAATTTGTTATTTTCGGCTATAGGTCCTATAGTGCTTAAGATTTTTTTGGATCTCATTCATATCTTTGGATTGCCATTGAGTCCCAACAAAAGTTATGTTAAGAATGAGTTGCAAGAGATGCTGGGAATTAGCTTAACGTTCAGGGCCTCACAAGATTATACTACTTACTATTTAGAACTCAAGGACACAAATGTACAACATATAGAACAGATCCTGTTCAAGAAAGTCGTAAGATCTTACTACTTACTCATGGCTACAAATTTGGAGTTTGACCAACAATTTATGTTGATCTTCCTTTGGGTGGCAAGCAAAGGAATTCACAATTGAGGAAGCCCATCTTTGAGAAAATCCATCATAAATTTTGTATTTGGAAAGAGACCTTCAACTCGAAAGGTCAAAGACATACACTCATCCTATTAACACTTTTCAAAAAGAAATGTGATTCAGGTTTTGACTCTCCTTTTAGTGTGAGCAGTGAAGAAGTTGATCATTTGGGGTAGCCAAATGGGTTGGAGGATCATTCTTTGAAGGACCCCTTTGAAATTGATCTCAATGATTTGTTTTAGAATGAAGAGGAATTGAATGTTGGAAAACAGACCTCTGAAAACCCTCTCTGTCTTAGCATTGCGAAATTCCAGCCCATTTAAAGCTGCTGGTAGATGAGTGCAAACAAGTTTTTGTTTGAGATCTGATTTTACTCACTTGTTTGGTTCAATAATCGGTTACAGTAGGAACTTGTGTGGTTTGAAGGTTGCAGATAAAGAGATTGAGATTCAAGTCTCTTGAAACACTTAATTCAGAACTAATACTCTCCCCTAGAATCAAAGAAGAAGCTGAGCTCAAGAAATGTTTCCTACCAGTTGAACAATTATTGCTTCTTAGCAGTTTTGTGGTTTCATCTTTGTGAAGATTCAGCTAGGCTGGTTGTTGTTCTCTTGGTGTTCCTTCTTCACTCATCTCAAAGCTTATTGTGGGCAAGATCTCAAAGTACAAGAGAATTATACAAAGAGAGCAATAAGGAAGTCGTAAGCAAGGGAAAGCAAGACAAAACTTCTTTATTGATTAGCTTGCTGTTATTGCTGAGTTTGATTTGGTTATTGTTTGTATTTGTTTTAGCCCCTTTTACTCTTTGTATAATTCTTTTGTACATTGAGCATTAGTCTCTCTTATTATTGAGGCTTGTCTTTGTTTTTTAAAAAAAAAAAGAATATGCCAATTTATTAGTCTTGTTTCCTTTGAAAAAAATATGTCAATTTCTTACTTATCTTTTGTCAAAATGCCTTCAAAGGTCACTAAATCTATTGAAAAGCTTTTAAGAGACTTCCTATGGGAAGGCCCAAACCTTGAGGGTGGAGTCTACCATGCTAATTATAAGAAAACAAACCACCTAAATCCATGGGAAGTTTAGGAATTGGCAACCTAAATTAGGGGAATGATGCATTTTTTTGCTAAATGGACAAGGAGATTCCTTCGTACAACAAAGGCTCTTTGGTGCAAGGCAATTAAAACTAAATATGACTATACTACCAATGAGCAAGTTTGGCCTTCCCCTTCAAAGAAATGTAATGCTAAAGTGGTATCCTTTTCAAAAAAGAAAAAAAAAAAAAAAAGAAAAGGAAAAGTAAAAGGAAACATTCATGGAGGAGGAAGTCTCTATGGCGCCAAGTAGTCAAAAGCATTCACGGTAAAGAGCCTTTCAATTAGCATACTATCGGTAAATCTGGAAATAATCTAAAAAGTTCTTGAATAGGTATTTCTAGAGTATGGGGAAAGGTAGAAACTTTGTCCACCTTCAAGCTGGGAAACTCGAATTGCTTTTCAGAATGATGTGTGGGCTGACAATATCCCCCTTAGATCTCGTTTCCAAAAGCTGTTTAGAATCACGTTGCTGCCTAATGGATCAGTAGCTGCACATTGGGACCACTCCACCCTATCTTGGTCTATAATTTTTAGAAGACTCCTTAAAGAAGAGGAAATTTCAGAATTTCAACAACTGCTTCACCTCCTTTCGCAAAGACAGGTGGTAGATTCTACAGATAGAAGGATTTGGTCTCTAGAACCATCCGGTAAGTTTTCAGTCAAATCCCTCGTGAATCACTTTTCAGCATCTTCTTCGATGACTAGAGAGACCTCACGAAGTCTTGTGGAAATCCAACGAACCTAGAAGAGTCAACATCTTAGTTTGGATTATGCTATTTGGGTTACTAAATTGCTCTTTGGTCATGCAAAGGAAACTCCCAAACAGTTGTTTTCTGCCCTCTTTGCTTCCTTGGTGAAGAGGATTTGCAACATCTGTTCTTCTGTCCATATTCAGCTAAATGTTGGGGCAGTCTTCTCTCTTTATTTAAAGTAAGTTGGGTGTTTGACAGAACATTCAACTCAAACATGAGACAGATTATATTGGGCCCACTTTAGAAAAAGGGGCCACGACTTCTTTGGACTAACTTGTCCAAATCACTACTTGAAGAAATTTGGTTCAAATGAAATCAAAGGGTAATCGATGATAAGTTCATGGCTTGTTCTGATCGAATGGACATCGTATAAAGAAACATAGTCACTTGGTGCACTTTAAACAAGGAGTTTAGCCATACTCTATTCAAGATTTGTGTTCGAATTGGTCGCCTTTTACATGCTAAGATATCTGGATTTTTGTGTATCTATACTATGTATTACCCTGATGCTTCCTTATTATAATACAATTTTATATTCTACTAGTTTTTGTATGGACATGATGAAGACGCTAAGGGGGTGTCAACCTAGTTGAGATGTTTGGGTGTGTCTCTTAATCCCTAGGTCTCTTCATTTGTATTCTTAGTATATTTCTCTTGTACTTTGAGTTTATTTTGAAATAATAAAGAGACTTTCTCCAATTCTCCTTTTAAAAAAATGGGAACATTCATCTAAAGCCCTCTTGGGAGCCATATCAAGTGTAAATAGAACCATTGGCAGCCCATTTTCAACAAGAAAAAACAACTTTTTGATGGTTGATGAAAAAATAAGTTCAAGGAAACAACATCCCAATGGGAGGATATATGGAAACAACTAGCAAACAGAAAAACTAGGTGTTAAGGGGTTGTCAATCTAGTTGAGATGCCCGGGTGCACCTCCTGATCCCGTCTGCTTTTTGCTCTTTAAGCTTCTTTATTACACTCATTGTATATCTCTTTTGTACTTCGAGTTTCTATTATTAATAAAGAAGTTTCTCTCCGTTTAGAAAAAAACAAAAAAACTATAAAAGAAAAAACAAGACTTAAGCCAACAGATGGCAGATGTTTGATATGCCTGTATATGTTCTTTCATTTCTCTTAACGTGACCTTTTTAGAGGGCCATCTCTCTCCCTAGTTCCCTCAATGGAAATTCCTTCCAATATGATCCACCCCTTGCTCCCAACCGACTTCCTCTTTTTATAACTGAAAACCCTAACAAACTCTTTTAGCTAATTACTTAGATGCCCTTCCCCATGGACATACTACTAATCCTAATAGAACCTTAGCTAGGGGTCTCAGACAGTGTTGCAGCCTCATATATTTTCCAATATATTTTCCTTCTTGCTCTTCGCTTCTTTGCATTGTCCTTGTTGGTCTTTTATTTTCTTATATACTTTTTTGTTTCTTCAAGGTATTCTTCCCTTGTACTTTTTATATATTGTGTTCTTTATTTCTCTCCCATATTCAACTTATATCCCTGATTTTTTTTGAAGAGGAACCAAGTCTCAATATTATTAATGATTAAAATAAAAAGACAAAAGGTTATAGTATAAGAGGGTTATACAATGAGCAAAGAAAAGAGAAAGGTGGATTAGCAGATGCACCTAGGCATCTCAACTAGGTCAACACCCCCTTAGTACCCTCATCATGTCCATTGTGCGGAAAGAAATAAAAGTTATTCTTTCTCTTGGTTGATAGTAGCCAATACAAAAGCAAAACACAAGGCCAAAATAAAGTAGTCTGCCCATACCAAACATAAACCAAAACAACATTAGAGATACATTAGAAAAGCAGTCCTCGATTATGCTAGGATCCGGTTGAAGCAGAAGGCTATCCAAAATCATGCTGTCCAGGACTTCAAAGTGGGGTGGGGGGGGGGGGGGGTGGGCTATAAAGGCTGGCCAGCAAAGTCTCCTGTTGAGAGTACTTCTGAAAAACTTTGGATAAGGAACACCATGATGTTGCATTCAGGCTAGCAGATTTAAAACGGTCCATCCATGTCGAAGGGTTGTCATGGAAAACCCTCTGGTTTCTTTCAAACCAAACTTCAACTAATAATGCTTTCACTGCATAATAAATGAGATTCATTTCCTTTTCAAAAGAACTAATACTGCATTAAACCACAGCAAGGGAGCTGTCTTCTTCTTCAAAGCTGGACCAGCAATGATTTGGACCACATTCAAGGAGTTGGTACCAGCAATTTGTTGTATAAACAGTCCAATAAAAGGTTCTAGATATCCTCCTGATTGTCTAGACAAAGGGGGCAAATATGTGGTGACAGAGCATGGGAAAAATTTGTTGCATGGGCTTATATCCATGATCATTAGTCTCTTTTTTATTTTCAAAACGAAAAATTTCGATCTTGATAAAAAGAACAATAACTTCCATAACTAGTCATAATTTCTATCAATGAAAATTCTTCCATTGTTTTCTAGAAGAAGTCAAATCAGTGTACAAAACCAGTGTCTTTCAAATTGTTACTTCCCCACTCTTGTATGTTCAATAAAAACAATCTTTGAACTTTTTTACAGACTAAAAACTCAGCATTCCATGTTTGACATTTTTTTGGGTTAATTTTAATAGTTGTTCAAATAGAATGTTAAATTAACGATCTCAAGTTTCATTTTCTTTTTTCAATTTGGTAGGTCGTGTAGGGAGGTTAAGCATCAAGATTCCATGGAAAAAGCTTGGATGGGATCCAATCATTATTATTTTAGAGGATATATATATTTCTGCATCTCAGCGGGATGATGGTGAGGTAATTAACCAAAGTTGCAACCATTGATCCAAAGGGATGAGGCCCATACTTACTCAATAAACTTATGCCATATTGTGTTGGCTTCATGGTTATTTAGGGCTCTTGCTCGCACATATATGTAGAATTATCAAAACAACTCTGTTTTAGTGTATTTGTTTGGGTGATTTTGGCAGGAAAAAATAAGAAATTTCAATAATAATCAGAATCAACTTTGAGTTTTGCTTGTTTTGTTTCAAGTCCGAGCCTAAATTTCGTGTTTTCTTTTTTTTTTTTTTTTCTTAAAACAAGTTCATGTTTTGTTAAACTAACTTTTTTTAATTAATATTTTCCTGTATTTTACTAT

mRNA sequence

TTGCGCTTGAAACCTCTAGAGAAGCCAAAGAGACGGACGAAATAAAATAGCGGCAAAATTGGCGAGAGAGATATAGAAAGAATGATTCGACGGAGCCGGCGAGATTGAGCCAGAGCTCGAGAGAGATTGAATGAATCGGTGAGAGCATGATTGATTGAGGACGAGATTCAGGGAGAGAAGTAGAGACGGTTCGTGTTCTTCAGTCAAATAATCCCAGACTAACCTGCTAAAAAACCCAACAATAATCAGATGAACTTAGACGGGGTTACTTGTTGTTGGTAGTGTTTTTAGGGAGAATATCGTGTGAGAATGTTTGAAGGACTCGTTGGACAGTTGCTTGTGGGTTATTTGGGCCGATATGTCAAGGATATTCAGAAGGAGAAGCTAAAGATTACATTCTGGAACGAGGAAATTTTATTGGAGAATGTTGAGCTCATTCTAGAGGCCTTTGATTATCTTCAATTGCCATTCGCCCTAAAGGAAGGTCGTGTAGGGAGGTTAAGCATCAAGATTCCATGGAAAAAGCTTGGATGGGATCCAATCATTATTATTTTAGAGGATATATATATTTCTGCATCTCAGCGGGATGATGGTGAGGTAATTAACCAAAGTTGCAACCATTGATCCAAAGGGATGAGGCCCATACTTACTCAATAAACTTATGCCATATTGTGTTGGCTTCATGGTTATTTAGGGCTCTTGCTCGCACATATATGTAGAATTATCAAAACAACTCTGTTTTAGTGTATTTGTTTGGGTGATTTTGGCAGGAAAAAATAAGAAATTTCAATAATAATCAGAATCAACTTTGAGTTTTGCTTGTTTTGTTTCAAGTCCGAGCCTAAATTTCGTGTTTTCTTTTTTTTTTTTTTTTCTTAAAACAAGTTCATGTTTTGTTAAACTAACTTTTTTTAATTAATATTTTCCTGTATTTTACTAT

Coding sequence (CDS)

ATGTTTGAAGGACTCGTTGGACAGTTGCTTGTGGGTTATTTGGGCCGATATGTCAAGGATATTCAGAAGGAGAAGCTAAAGATTACATTCTGGAACGAGGAAATTTTATTGGAGAATGTTGAGCTCATTCTAGAGGCCTTTGATTATCTTCAATTGCCATTCGCCCTAAAGGAAGGTCGTGTAGGGAGGTTAAGCATCAAGATTCCATGGAAAAAGCTTGGATGGGATCCAATCATTATTATTTTAGAGGATATATATATTTCTGCATCTCAGCGGGATGATGGTGAGGTAATTAACCAAAGTTGCAACCATTGA

Protein sequence

MFEGLVGQLLVGYLGRYVKDIQKEKLKITFWNEEILLENVELILEAFDYLQLPFALKEGRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDGEVINQSCNH
Homology
[Close]
BLAST of IVF0016856 vs. ExPASy Swiss-Prot
Match: Q54KX3 (Putative vacuolar protein sorting-associated protein 13F OS=Dictyostelium discoideum OX=44689 GN=vps13F PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 5.4e-18
Identity = 39/92 (42.39%), Postives = 61/92 (66.30%), Query Frame = 0 

Query: 1  MFEGLVGQLLVGYLGRYVKDIQKEKLKITFWNEEILLENVELILEAFDYLQLPFALKEGR 60
          MFE +V  LL  YL  Y+K +  + L I+ W+  + LEN+EL   A +   LPF +KEG 
Sbjct: 1  MFESIVSNLLTRYLKEYIKALNTDNLNISIWSGNVSLENLELKSRALEKFNLPFTIKEGF 60

Query: 61 VGRLSIKIPWKKLGWDPIIIILEDIYISASQR 93
          +G+LS+KIPW  L  +P+I++++ +YI+AS +
Sbjct: 61 LGKLSLKIPWNNLKTEPVIVVIDQLYITASPK 92

[Close]
BLAST of IVF0016856 vs. ExPASy Swiss-Prot
Match: Q54LN2 (Putative vacuolar protein sorting-associated protein 13D OS=Dictyostelium discoideum OX=44689 GN=vps13D PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.1e-13
Identity = 36/101 (35.64%), Postives = 64/101 (63.37%), Query Frame = 0 

Query: 1   MFEGLVGQLLVGYLGRYVKDIQKEKLKITFWNEEILLENVELILEAFDYLQLPFALKEGR 60
           +FE +V +++  +LG +++++ K++LKI   N  ++L+N+E+  EAF    LP ++  G 
Sbjct: 2   VFESVVAEVIDRFLGSFLQEVGKKQLKIGVLNGNVVLKNIEVKPEAFKAFDLPLSIDRGI 61

Query: 61  VGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDGEVINQS 102
           VG+L+IK+PW  L  + +++ L+DIYI AS        N S
Sbjct: 62  VGKLTIKVPWTSLKSESVVVHLQDIYILASSSSTNVSSNYS 102

[Close]
BLAST of IVF0016856 vs. ExPASy Swiss-Prot
Match: A1Z713 (Vacuolar protein sorting-associated protein 13 OS=Drosophila melanogaster OX=7227 GN=Vps13 PE=1 SV=2)

HSP 1 Score: 76.6 bits (187), Expect = 1.8e-13
Identity = 34/94 (36.17%), Postives = 60/94 (63.83%), Query Frame = 0 

Query: 1  MFEGLVGQLLVGYLGRYVKDIQKEKLKITFWNEEILLENVELILEAFDYLQLPFALKEGR 60
          +FE +V  +L   LG Y++++ + +LKI  W  +++L+N+++   A D L LP  L  G 
Sbjct: 2  VFEAVVADVLNKVLGDYIENLDRNQLKIGIWGGDVVLQNLKIRENALDELDLPVQLIYGY 61

Query: 61 VGRLSIKIPWKKLGWDPIIIILEDIYISASQRDD 95
          +G+L +KIPWK L   P+I+ +ED+Y+  S  ++
Sbjct: 62 LGKLVLKIPWKNLYSQPVIVNIEDLYVLVSPNNN 95

[Close]
BLAST of IVF0016856 vs. ExPASy Swiss-Prot
Match: Q54LB8 (Putative vacuolar protein sorting-associated protein 13A OS=Dictyostelium discoideum OX=44689 GN=vps13A PE=2 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 3.4e-12
Identity = 38/91 (41.76%), Postives = 58/91 (63.74%), Query Frame = 0 

Query: 1  MFEGLVGQLLVGYLGRYVKDIQKEKLKITFWNEEILLENVELILEAFDYL--QLPFALKE 60
          +FEGLV  +L   LG YVK++ K++LKI  +   + L+N+EL  +A   L   LP  +K+
Sbjct: 2  VFEGLVSDVLSRVLGEYVKNLNKDQLKIGIFGGSVQLQNLELKEDALANLPINLPITVKK 61

Query: 61 GRVGRLSIKIPWKKLGWDPIIIILEDIYISA 90
          G +G+L +K+PWK L   P+II ++ IY  A
Sbjct: 62 GFLGKLDLKVPWKDLKSKPVIINIDCIYALA 92

[Close]
BLAST of IVF0016856 vs. ExPASy Swiss-Prot
Match: Q555C6 (Putative vacuolar protein sorting-associated protein 13B OS=Dictyostelium discoideum OX=44689 GN=vps13B PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 4.4e-12
Identity = 32/89 (35.96%), Postives = 57/89 (64.04%), Query Frame = 0 

Query: 1  MFEGLVGQLLVGYLGRYVKDIQKEKLKITFWNEEILLENVELILEAFDYLQLPFALKEGR 60
          MFE LV  ++  Y+G Y+K++  E+LKI  ++  ++L+N+E+  EA    +LP  +++G 
Sbjct: 1  MFESLVADIIAKYIGEYIKNLSSEQLKINVFSGNVVLKNLEIKGEALQSFKLPLHVQKGI 60

Query: 61 VGRLSIKIPWKKLGWDPIIIILEDIYISA 90
          +G L++KIPW  L   P+I  ++ I + A
Sbjct: 61 IGTLTLKIPWTNLKSSPVIFDIDCISLYA 89

[Close]
BLAST of IVF0016856 vs. ExPASy TrEMBL
Match: A0A1S3B8J3 (putative vacuolar protein sorting-associated protein 13A isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487212 PE=3 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 9.8e-47
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0 

Query: 1  MFEGLVGQLLVGYLGRYVKDIQKEKLKITFWNEEILLENVELILEAFDYLQLPFALKEGR 60
          MFEGLVGQLLVGYLGRYVKDIQKEKLKITFWNEEILLENVELILEAFDYLQLPFALKEGR
Sbjct: 1  MFEGLVGQLLVGYLGRYVKDIQKEKLKITFWNEEILLENVELILEAFDYLQLPFALKEGR 60

Query: 61 VGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDGE 97
          VGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDGE
Sbjct: 61 VGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDGE 96

[Close]
BLAST of IVF0016856 vs. ExPASy TrEMBL
Match: A0A6J1JMV4 (uncharacterized protein LOC111485823 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111485823 PE=3 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.6e-44
Identity = 93/96 (96.88%), Postives = 94/96 (97.92%), Query Frame = 0 

Query: 1  MFEGLVGQLLVGYLGRYVKDIQKEKLKITFWNEEILLENVELILEAFDYLQLPFALKEGR 60
          MFE LVGQLLVGYLGRYVKDIQKEKLKITFWNEEILLENVELILEAFDYLQLPFALK+GR
Sbjct: 1  MFERLVGQLLVGYLGRYVKDIQKEKLKITFWNEEILLENVELILEAFDYLQLPFALKQGR 60

Query: 61 VGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDGE 97
          VGRLSIKIPWKKLGWDPIIIILEDIYISASQRDD E
Sbjct: 61 VGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDEE 96

[Close]
BLAST of IVF0016856 vs. ExPASy TrEMBL
Match: A0A6J1H814 (uncharacterized protein LOC111461381 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111461381 PE=3 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.6e-44
Identity = 93/96 (96.88%), Postives = 94/96 (97.92%), Query Frame = 0 

Query: 1  MFEGLVGQLLVGYLGRYVKDIQKEKLKITFWNEEILLENVELILEAFDYLQLPFALKEGR 60
          MFE LVGQLLVGYLGRYVKDIQKEKLKITFWNEEILLENVELILEAFDYLQLPFALK+GR
Sbjct: 1  MFERLVGQLLVGYLGRYVKDIQKEKLKITFWNEEILLENVELILEAFDYLQLPFALKQGR 60

Query: 61 VGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDGE 97
          VGRLSIKIPWKKLGWDPIIIILEDIYISASQRDD E
Sbjct: 61 VGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDEE 96

[Close]
BLAST of IVF0016856 vs. ExPASy TrEMBL
Match: A0A6J1D8L0 (uncharacterized protein LOC111018256 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111018256 PE=3 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 2.0e-44
Identity = 92/96 (95.83%), Postives = 94/96 (97.92%), Query Frame = 0 

Query: 1  MFEGLVGQLLVGYLGRYVKDIQKEKLKITFWNEEILLENVELILEAFDYLQLPFALKEGR 60
          MFEGLV QLLVGYLGRYVKDIQKEKLKITFWNEE+LLENVELILEAFDYLQLPFALK+GR
Sbjct: 1  MFEGLVRQLLVGYLGRYVKDIQKEKLKITFWNEEVLLENVELILEAFDYLQLPFALKQGR 60

Query: 61 VGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDGE 97
          VGRLSIKIPWKKLGWDPIIIILEDIYISASQRDD E
Sbjct: 61 VGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDEE 96

[Close]
BLAST of IVF0016856 vs. ExPASy TrEMBL
Match: A0A6J1D861 (uncharacterized protein LOC111018256 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111018256 PE=3 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 2.0e-44
Identity = 92/96 (95.83%), Postives = 94/96 (97.92%), Query Frame = 0 

Query: 1  MFEGLVGQLLVGYLGRYVKDIQKEKLKITFWNEEILLENVELILEAFDYLQLPFALKEGR 60
          MFEGLV QLLVGYLGRYVKDIQKEKLKITFWNEE+LLENVELILEAFDYLQLPFALK+GR
Sbjct: 1  MFEGLVRQLLVGYLGRYVKDIQKEKLKITFWNEEVLLENVELILEAFDYLQLPFALKQGR 60

Query: 61 VGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDGE 97
          VGRLSIKIPWKKLGWDPIIIILEDIYISASQRDD E
Sbjct: 61 VGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDEE 96

[Close]
BLAST of IVF0016856 vs. NCBI nr
Match: XP_008443663.1 (PREDICTED: putative vacuolar protein sorting-associated protein 13A isoform X1 [Cucumis melo])

HSP 1 Score: 196 bits (499), Expect = 1.01e-55
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0 

Query: 1  MFEGLVGQLLVGYLGRYVKDIQKEKLKITFWNEEILLENVELILEAFDYLQLPFALKEGR 60
          MFEGLVGQLLVGYLGRYVKDIQKEKLKITFWNEEILLENVELILEAFDYLQLPFALKEGR
Sbjct: 1  MFEGLVGQLLVGYLGRYVKDIQKEKLKITFWNEEILLENVELILEAFDYLQLPFALKEGR 60

Query: 61 VGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDGE 96
          VGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDGE
Sbjct: 61 VGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDGE 96

[Close]
BLAST of IVF0016856 vs. NCBI nr
Match: XP_031736164.1 (uncharacterized protein LOC101204937 isoform X3 [Cucumis sativus])

HSP 1 Score: 196 bits (499), Expect = 1.02e-55
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0 

Query: 1  MFEGLVGQLLVGYLGRYVKDIQKEKLKITFWNEEILLENVELILEAFDYLQLPFALKEGR 60
          MFEGLVGQLLVGYLGRYVKDIQKEKLKITFWNEEILLENVELILEAFDYLQLPFALKEGR
Sbjct: 1  MFEGLVGQLLVGYLGRYVKDIQKEKLKITFWNEEILLENVELILEAFDYLQLPFALKEGR 60

Query: 61 VGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDGE 96
          VGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDGE
Sbjct: 61 VGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDGE 96

[Close]
BLAST of IVF0016856 vs. NCBI nr
Match: XP_011660209.1 (uncharacterized protein LOC101204937 isoform X1 [Cucumis sativus])

HSP 1 Score: 196 bits (499), Expect = 1.03e-55
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0 

Query: 1  MFEGLVGQLLVGYLGRYVKDIQKEKLKITFWNEEILLENVELILEAFDYLQLPFALKEGR 60
          MFEGLVGQLLVGYLGRYVKDIQKEKLKITFWNEEILLENVELILEAFDYLQLPFALKEGR
Sbjct: 1  MFEGLVGQLLVGYLGRYVKDIQKEKLKITFWNEEILLENVELILEAFDYLQLPFALKEGR 60

Query: 61 VGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDGE 96
          VGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDGE
Sbjct: 61 VGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDGE 96

[Close]
BLAST of IVF0016856 vs. NCBI nr
Match: KAG6649829.1 (hypothetical protein CIPAW_06G000200, partial [Carya illinoinensis])

HSP 1 Score: 176 bits (446), Expect = 1.14e-54
Identity = 83/96 (86.46%), Postives = 91/96 (94.79%), Query Frame = 0 

Query: 1  MFEGLVGQLLVGYLGRYVKDIQKEKLKITFWNEEILLENVELILEAFDYLQLPFALKEGR 60
          M EGLV QLL+GYLGRYVKDIQKE+LKIT WNEE+LLENVELILEAFDYLQLPFALK+GR
Sbjct: 1  MLEGLVRQLLLGYLGRYVKDIQKEQLKITLWNEEVLLENVELILEAFDYLQLPFALKQGR 60

Query: 61 VGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDGE 96
          +GRLSIKIPWKKLGWDPIIIILED+++ ASQRDD E
Sbjct: 61 LGRLSIKIPWKKLGWDPIIIILEDVFVCASQRDDHE 96

[Close]
BLAST of IVF0016856 vs. NCBI nr
Match: KAG7973515.1 (hypothetical protein I3843_06G000200, partial [Carya illinoinensis])

HSP 1 Score: 176 bits (446), Expect = 1.90e-54
Identity = 83/96 (86.46%), Postives = 91/96 (94.79%), Query Frame = 0 

Query: 1  MFEGLVGQLLVGYLGRYVKDIQKEKLKITFWNEEILLENVELILEAFDYLQLPFALKEGR 60
          M EGLV QLL+GYLGRYVKDIQKE+LKIT WNEE+LLENVELILEAFDYLQLPFALK+GR
Sbjct: 1  MLEGLVRQLLLGYLGRYVKDIQKEQLKITLWNEEVLLENVELILEAFDYLQLPFALKQGR 60

Query: 61 VGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDGE 96
          +GRLSIKIPWKKLGWDPIIIILED+++ ASQRDD E
Sbjct: 61 LGRLSIKIPWKKLGWDPIIIILEDVFVCASQRDDHE 96

[Close]
BLAST of IVF0016856 vs. TAIR 10
Match: AT5G24740.1 (Protein of unknown function (DUF1162) )

HSP 1 Score: 136.7 bits (343), Expect = 1.0e-32
Identity = 67/99 (67.68%), Postives = 82/99 (82.83%), Query Frame = 0 

Query: 1  MFEGLVG---QLLVGYLGRYVKDIQKEKLKITFWNEEILLENVELILEAFDYLQLPFALK 60
          M EG V     LL+GYLGRY+KDIQK++LKI+ WN E+LLENVEL  EAF+YLQLP ALK
Sbjct: 1  MLEGYVQGFVNLLLGYLGRYIKDIQKDQLKISLWNGEVLLENVELNPEAFEYLQLPIALK 60

Query: 61 EGRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDGE 97
          +GRVG+LSIKIPWKKL  DP+ I++ED++I ASQR+D E
Sbjct: 61 QGRVGKLSIKIPWKKLHRDPVTIMIEDVFICASQRNDQE 99

[Close]
BLAST of IVF0016856 vs. TAIR 10
Match: AT5G24740.2 (Protein of unknown function (DUF1162) )

HSP 1 Score: 136.7 bits (343), Expect = 1.0e-32
Identity = 67/99 (67.68%), Postives = 82/99 (82.83%), Query Frame = 0 

Query: 1  MFEGLVG---QLLVGYLGRYVKDIQKEKLKITFWNEEILLENVELILEAFDYLQLPFALK 60
          M EG V     LL+GYLGRY+KDIQK++LKI+ WN E+LLENVEL  EAF+YLQLP ALK
Sbjct: 1  MLEGYVQGFVNLLLGYLGRYIKDIQKDQLKISLWNGEVLLENVELNPEAFEYLQLPIALK 60

Query: 61 EGRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDGE 97
          +GRVG+LSIKIPWKKL  DP+ I++ED++I ASQR+D E
Sbjct: 61 QGRVGKLSIKIPWKKLHRDPVTIMIEDVFICASQRNDQE 99

[Close]
BLAST of IVF0016856 vs. TAIR 10
Match: AT4G17140.1 (pleckstrin homology (PH) domain-containing protein )

HSP 1 Score: 83.6 bits (205), Expect = 1.0e-16
Identity = 38/100 (38.00%), Postives = 64/100 (64.00%), Query Frame = 0 

Query: 1   MFEGLVGQLLVGYLGRYVKDIQKEKLKITFWNEEILLENVELILEAFDYLQLPFALKEGR 60
           M E  V  LL  YLG YV+ + KE LKI+ W  ++ L+N++L  EA + L+LP  +K G 
Sbjct: 1   MLEDQVAYLLQRYLGNYVRGLNKEALKISVWQGDVELKNMQLKPEALNALKLPVRVKAGF 60

Query: 61  VGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDGEVINQ 101
           +G + +K+PW +LG +P+++ L+ I++ A    D E +++
Sbjct: 61  LGSVKLKVPWTRLGQEPVVVYLDRIFVLAEPATDVEGLSE 100

[Close]
BLAST of IVF0016856 vs. TAIR 10
Match: AT4G17140.2 (pleckstrin homology (PH) domain-containing protein )

HSP 1 Score: 83.6 bits (205), Expect = 1.0e-16
Identity = 38/100 (38.00%), Postives = 64/100 (64.00%), Query Frame = 0 

Query: 1   MFEGLVGQLLVGYLGRYVKDIQKEKLKITFWNEEILLENVELILEAFDYLQLPFALKEGR 60
           M E  V  LL  YLG YV+ + KE LKI+ W  ++ L+N++L  EA + L+LP  +K G 
Sbjct: 1   MLEDQVAYLLQRYLGNYVRGLNKEALKISVWQGDVELKNMQLKPEALNALKLPVRVKAGF 60

Query: 61  VGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDGEVINQ 101
           +G + +K+PW +LG +P+++ L+ I++ A    D E +++
Sbjct: 61  LGSVKLKVPWTRLGQEPVVVYLDRIFVLAEPATDVEGLSE 100

[Close]
BLAST of IVF0016856 vs. TAIR 10
Match: AT4G17140.3 (pleckstrin homology (PH) domain-containing protein )

HSP 1 Score: 83.6 bits (205), Expect = 1.0e-16
Identity = 38/100 (38.00%), Postives = 64/100 (64.00%), Query Frame = 0 

Query: 1   MFEGLVGQLLVGYLGRYVKDIQKEKLKITFWNEEILLENVELILEAFDYLQLPFALKEGR 60
           M E  V  LL  YLG YV+ + KE LKI+ W  ++ L+N++L  EA + L+LP  +K G 
Sbjct: 1   MLEDQVAYLLQRYLGNYVRGLNKEALKISVWQGDVELKNMQLKPEALNALKLPVRVKAGF 60

Query: 61  VGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDGEVINQ 101
           +G + +K+PW +LG +P+++ L+ I++ A    D E +++
Sbjct: 61  LGSVKLKVPWTRLGQEPVVVYLDRIFVLAEPATDVEGLSE 100

The following BLAST results are available for this feature:
BLAST of IVF0016856 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q54KX35.4e-1842.39Putative vacuolar protein sorting-associated protein 13F OS=Dictyostelium discoi... [more]
Q54LN21.1e-1335.64Putative vacuolar protein sorting-associated protein 13D OS=Dictyostelium discoi... [more]
A1Z7131.8e-1336.17Vacuolar protein sorting-associated protein 13 OS=Drosophila melanogaster OX=722... [more]
Q54LB83.4e-1241.76Putative vacuolar protein sorting-associated protein 13A OS=Dictyostelium discoi... [more]
Q555C64.4e-1235.96Putative vacuolar protein sorting-associated protein 13B OS=Dictyostelium discoi... [more]
BLAST of IVF0016856 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3B8J39.8e-47100.00putative vacuolar protein sorting-associated protein 13A isoform X1 OS=Cucumis m... [more]
A0A6J1JMV41.6e-4496.88uncharacterized protein LOC111485823 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1H8141.6e-4496.88uncharacterized protein LOC111461381 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1D8L02.0e-4495.83uncharacterized protein LOC111018256 isoform X2 OS=Momordica charantia OX=3673 G... [more]
A0A6J1D8612.0e-4495.83uncharacterized protein LOC111018256 isoform X1 OS=Momordica charantia OX=3673 G... [more]
BLAST of IVF0016856 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008443663.11.01e-55100.00PREDICTED: putative vacuolar protein sorting-associated protein 13A isoform X1 [... [more]
XP_031736164.11.02e-55100.00uncharacterized protein LOC101204937 isoform X3 [Cucumis sativus][more]
XP_011660209.11.03e-55100.00uncharacterized protein LOC101204937 isoform X1 [Cucumis sativus][more]
KAG6649829.11.14e-5486.46hypothetical protein CIPAW_06G000200, partial [Carya illinoinensis][more]
KAG7973515.11.90e-5486.46hypothetical protein I3843_06G000200, partial [Carya illinoinensis][more]
BLAST of IVF0016856 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G24740.11.0e-3267.68Protein of unknown function (DUF1162) [more]
AT5G24740.21.0e-3267.68Protein of unknown function (DUF1162) [more]
AT4G17140.11.0e-1638.00pleckstrin homology (PH) domain-containing protein [more]
AT4G17140.21.0e-1638.00pleckstrin homology (PH) domain-containing protein [more]
AT4G17140.31.0e-1638.00pleckstrin homology (PH) domain-containing protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026854Vacuolar protein sorting-associated protein 13-like, N-terminal domainPFAMPF12624Chorein_Ncoord: 2..97
e-value: 5.8E-32
score: 110.2
IPR026847Vacuolar protein sorting-associated protein 13PANTHERPTHR16166VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13coord: 1..92
NoneNo IPR availablePANTHERPTHR16166:SF97VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 13F-RELATEDcoord: 1..92

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0016856.2IVF0016856.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane