IVF0016819 (gene) Melon (IVF77) v1

Overview


Name	IVF0016819
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr12: 14558586 .. 14559099 (+)
RNA-Seq Expression	IVF0016819
Synteny	IVF0016819

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCGGAAATGGTAAAAGGGGTCCCATTAAAGAGAAAGATGAAGAGAGTGCACATGATTTGGATCCACAAAAACAGGTAAGAAAAGAATGAAAAAGAAAGGGGCGGATTTGGAGCCACAGGATGGGTTTGAGAGGTCGATTTTAGGGTTTTGGGGATTGAACGAAGTAGAAGAAGACAAATTGGGAAAAGAAATTGTCGGATGAATAATGGAGATGGAGGGAAAAGAAAATCATAGTAATTTGAGTTGTAATTGTCGAAGCAGAAGCAAAAGATTCAACAAAAACAAAATTCCACTCCTTGGCTTAGGGGTTTACTACTGCTTTTTCCCCCTTTTATCGATTCTCTGTTAAAAGTACAATCCTTAAGTACAATTCTTAAAGTAATGGAAAAGATTGTGGTTAGCTTTTTTCTGGTGATTAAAGTTGTTTTTCTTGTAACTTCAATTTGTGACCGCTATCAAATAGCAGCTTGCAGTAAGGTTGCTCACTTTTTTCTAACAGTAGAGATCTAA

mRNA sequence

ATGATCGGAAATGGTAAAAGGGGTCCCATTAAAGAGAAAGATGAAGAGAGTGCACATGATTTGGATCCACAAAAACAGGTCGATTTTAGGGTTTTGGGGATTGAACGAAGTAGAAGAAGACAAATTGGGAAAAGAAATTGTCGGATGAATAATGGAGATGGAGGGAAAAGAAAATCATATACAATTCTTAAAGTAATGGAAAAGATTGTGGTTAGCTTTTTTCTGGTGATTAAAGTTGTTTTTCTTGTAACTTCAATTTGTGACCGCTATCAAATAGCAGCTTGCAGTAAGGTTGCTCACTTTTTTCTAACAGTAGAGATCTAA

Coding sequence (CDS)

ATGATCGGAAATGGTAAAAGGGGTCCCATTAAAGAGAAAGATGAAGAGAGTGCACATGATTTGGATCCACAAAAACAGGTCGATTTTAGGGTTTTGGGGATTGAACGAAGTAGAAGAAGACAAATTGGGAAAAGAAATTGTCGGATGAATAATGGAGATGGAGGGAAAAGAAAATCATATACAATTCTTAAAGTAATGGAAAAGATTGTGGTTAGCTTTTTTCTGGTGATTAAAGTTGTTTTTCTTGTAACTTCAATTTGTGACCGCTATCAAATAGCAGCTTGCAGTAAGGTTGCTCACTTTTTTCTAACAGTAGAGATCTAA

Protein sequence

MIGNGKRGPIKEKDEESAHDLDPQKQVDFRVLGIERSRRRQIGKRNCRMNNGDGGKRKSYTILKVMEKIVVSFFLVIKVVFLVTSICDRYQIAACSKVAHFFLTVEI

Homology

[Close]

BLAST of IVF0016819 vs. ExPASy TrEMBL
Match: A0A0A0LTC1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173180 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 6.8e-27
Identity = 77/107 (71.96%), Postives = 83/107 (77.57%), Query Frame = 0


Query: 1   MIGNGKRGPIKEKDEESAHDLDPQKQVDFRVLGIERSRRRQIGKRNCRMNNGDGGKRKSY 60
           M+G+GKRGPIKEKDEE+AH LDPQKQ       IERS RRQIGKRNCRMN+ +   RK  
Sbjct: 1   MMGSGKRGPIKEKDEENAHYLDPQKQ------EIERSGRRQIGKRNCRMNDDEDEGRKK- 60

Query: 61  TILKVMEKIVVSFFLVIKVVFLVTSICDRYQIAACSKVAHFFLTVEI 108
             + VMEKIV SFFLVIKVVFLVT ICDRYQIA  SKVAH F TVEI
Sbjct: 61  --IIVMEKIVASFFLVIKVVFLVTLICDRYQIAPPSKVAHVFATVEI 98

[Close]

BLAST of IVF0016819 vs. NCBI nr
Match: KGN64998.1 (hypothetical protein Csa_022732 [Cucumis sativus])

HSP 1 Score: 132 bits (331), Expect = 1.75e-37
Identity = 77/107 (71.96%), Postives = 83/107 (77.57%), Query Frame = 0


Query: 1   MIGNGKRGPIKEKDEESAHDLDPQKQVDFRVLGIERSRRRQIGKRNCRMNNGDGGKRKSY 60
           M+G+GKRGPIKEKDEE+AH LDPQKQ       IERS RRQIGKRNCRMN+ +   RK  
Sbjct: 1   MMGSGKRGPIKEKDEENAHYLDPQKQE------IERSGRRQIGKRNCRMNDDEDEGRKK- 60

Query: 61  TILKVMEKIVVSFFLVIKVVFLVTSICDRYQIAACSKVAHFFLTVEI 107
             + VMEKIV SFFLVIKVVFLVT ICDRYQIA  SKVAH F TVEI
Sbjct: 61  --IIVMEKIVASFFLVIKVVFLVTLICDRYQIAPPSKVAHVFATVEI 98

The following BLAST results are available for this feature:

BLAST of IVF0016819 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0016819 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTC1	6.8e-27	71.96	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173180 PE=4 SV=1	[more]

BLAST of IVF0016819 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64998.1	1.75e-37	71.96	hypothetical protein Csa_022732 [Cucumis sativus]	[more]

BLAST of IVF0016819 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 7..23

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0016819.1	IVF0016819.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane