IVF0016813 (gene) Melon (IVF77) v1

Overview


Name	IVF0016813
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	zinc finger CCCH domain-containing protein 3
Location	chr02: 254943 .. 256548 (+)
RNA-Seq Expression	IVF0016813
Synteny	IVF0016813

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTACTTTAGCAAATATTAACAATTTGACTTATTGAACTGTTGACTCGGATGCATCTACTCACAAAATAAACACATCGAAGTATGCTTTGCTCAATGGTATCGATATATTAAATTGACCACCTCATGGTTGTACTAAAAAAGGAAGTCTTAATACCAATTTATACCTAAGAAAAACAAATCTAGAAATTGTGGGGGAAAAAACATAAGGTTGATTGTAGGAGAAATTGATCAGAAACAGAAAACCTTCAAAGAAAGCTTTGGAACGACGAACAAGAAGATGCCATTGGGAAAATATTATTGCGACTATTGCGATAAGCAATTTCAAGACACTCCCTTTGCTCGGAAACGCCATCTTCAAAGTCTCTCCCATCAGAAGGCCAAAGCTCTATGGTTCGACTCCTTCAAAGGTCCAACACCCCATCTCCTTTCTTCTTTCTCCCTTTTCCCCTCATTTCCCCCCCTCAATTCTTCCTTTTTCCCTTGCAGATTCCAATCAAACTTTCCCTCATTCCTTCCACTTCCGACCACGCATATGTAATCGATTCCTCTCTACGGTAATTCTCAATCCTTCTTCTTCTTCTTCTCTTCGCATCGTCATCCATTTTCTTTTAACCTAATTTTTGCTTCTTTTTCGTCTTCATTTCAAAGGGGTTTTGCCAATACGGTGATTCTTGTAAATATTTTCACCCCAAGAACAACCACAATGACAATACGCACAACTCCAGTTCTCACCCCATTGCAGGTATCCCGAAATTTATTTTCGTTTTTCATCCATTTCCTGTCTAATTTTGAATCTAATTCACAGGTTTCCCGGAAAATAATCAACCCCCAAATGTTCCGTTTAATCGATTTGTAGACGGCAACTCTTCTTCCACAGGTAACTTTTAAAGTGAACTTGTTGCTGGTTTTTTTGGCGGCTTTATGTGTTCCACGCTTTATTTGTTTATTTATTATTACCAAAAGGAACAGCCGTGTATTTGCTCATTCGTAGCAACAATTCATCTTTCATTGATCGATTTTGAACAGCTCTACATATTGTTTGGCAACCAGGTTTATTGTATTTGAAAATTAACCATCTAAAACACTAATCCACCTCTAAGTTCCTTGCTTTATTGTATACTTCCTACCAATTTTTAAAAAATCAGGCCATGTCGTGAAACTTAAAAAAATTGTTCTTATTTTTAGAATTAGCTAAAAATTGAAATTTTTTACCCAATAAAGATGAAACGAGTGTTGTAAGAAATTGAGAGGAGATGGACTTAATTTAATAAAACTAAAACTAAATGGTTACCAACCCAGTGGGTTTCTGTTCCTTACATTAGTTCATAATCTTTACCTTCAGGTAGTCTAGTTAGCGATAGACTGGGAACATCATGGGGAAATTTACCTCCATCACTGATGCCTCCTCCAGAGGGTGGATACCCACCTCTTCCTTTCGTAGATTGGGGATAATCCATCTCAATATCAGCTATTGGTACAACTCTCATCGGTTCTCTGGTTTCTGGGAAGTGCTACTCTATTTATGCAGAAATTTGTACAAATTTGTTGTCTTCACATCCAGCAAATGTGCTCTCTTGTTTTCCCTTCGGGTACGATTTGCAACCCA

mRNA sequence

GTACTTTAGCAAATATTAACAATTTGACTTATTGAACTGTTGACTCGGATGCATCTACTCACAAAATAAACACATCGAAGTATGCTTTGCTCAATGGTATCGATATATTAAATTGACCACCTCATGGTTGTACTAAAAAAGGAAGTCTTAATACCAATTTATACCTAAGAAAAACAAATCTAGAAATTGTGGGGGAAAAAACATAAGGTTGATTGTAGGAGAAATTGATCAGAAACAGAAAACCTTCAAAGAAAGCTTTGGAACGACGAACAAGAAGATGCCATTGGGAAAATATTATTGCGACTATTGCGATAAGCAATTTCAAGACACTCCCTTTGCTCGGAAACGCCATCTTCAAAGTCTCTCCCATCAGAAGGCCAAAGCTCTATGGTTCGACTCCTTCAAAGATTCCAATCAAACTTTCCCTCATTCCTTCCACTTCCGACCACGCATATGTAATCGATTCCTCTCTACGGGGTTTTGCCAATACGGTGATTCTTGTAAATATTTTCACCCCAAGAACAACCACAATGACAATACGCACAACTCCAGTTCTCACCCCATTGCAGGTTTCCCGGAAAATAATCAACCCCCAAATGTTCCGTTTAATCGATTTGTAGACGGCAACTCTTCTTCCACAGGTAGTCTAGTTAGCGATAGACTGGGAACATCATGGGGAAATTTACCTCCATCACTGATGCCTCCTCCAGAGGGTGGATACCCACCTCTTCCTTTCGTAGATTGGGGATAATCCATCTCAATATCAGCTATTGGTACAACTCTCATCGGTTCTCTGGTTTCTGGGAAGTGCTACTCTATTTATGCAGAAATTTGTACAAATTTGTTGTCTTCACATCCAGCAAATGTGCTCTCTTGTTTTCCCTTCGGGTACGATTTGCAACCCA

Coding sequence (CDS)

ATGCCATTGGGAAAATATTATTGCGACTATTGCGATAAGCAATTTCAAGACACTCCCTTTGCTCGGAAACGCCATCTTCAAAGTCTCTCCCATCAGAAGGCCAAAGCTCTATGGTTCGACTCCTTCAAAGATTCCAATCAAACTTTCCCTCATTCCTTCCACTTCCGACCACGCATATGTAATCGATTCCTCTCTACGGGGTTTTGCCAATACGGTGATTCTTGTAAATATTTTCACCCCAAGAACAACCACAATGACAATACGCACAACTCCAGTTCTCACCCCATTGCAGGTTTCCCGGAAAATAATCAACCCCCAAATGTTCCGTTTAATCGATTTGTAGACGGCAACTCTTCTTCCACAGGTAGTCTAGTTAGCGATAGACTGGGAACATCATGGGGAAATTTACCTCCATCACTGATGCCTCCTCCAGAGGGTGGATACCCACCTCTTCCTTTCGTAGATTGGGGATAA

Protein sequence

MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDSNQTFPHSFHFRPRICNRFLSTGFCQYGDSCKYFHPKNNHNDNTHNSSSHPIAGFPENNQPPNVPFNRFVDGNSSSTGSLVSDRLGTSWGNLPPSLMPPPEGGYPPLPFVDWG

Homology

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BLAST of IVF0016813 vs. ExPASy Swiss-Prot
Match: Q0JP11 (Zinc finger CCCH domain-containing protein 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0252200 PE=2 SV=2)

HSP 1 Score: 149.8 bits (377), Expect = 2.5e-35
Identity = 84/172 (48.84%), Postives = 106/172 (61.63%), Query Frame = 0


Query: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFK-----DSNQTFPHSFHF 60
           MPLGKYYCDYC+KQFQDTP ARKRHL    H +A+ALW+D+ +           P   H 
Sbjct: 1   MPLGKYYCDYCEKQFQDTPAARKRHLDGAQHHRARALWYDAVRRQELHGGGGGAPPLLH- 60

Query: 61  RP-----RICNRFLSTGFCQYGDSCKYFHPKNNHNDNTHNSSSHPIAG--FPENN---QP 120
           +P      +C  F+ TG C++GDSC+YFHPK     N   + S P++G    ++N     
Sbjct: 61  QPGAAAIGVCQHFVRTGTCKFGDSCRYFHPK-PPPANPGPAPSGPVSGPMAQQSNIQGSQ 120

Query: 121 PNVPFNRFVDGNSSSTGSLVSDRLGTSWGNLPPSLMPPPEGGYPPLPFVDWG 158
           PN    +  DG SS +G+++     TSWGNLPPSL PPPEGGYPP PFVDWG
Sbjct: 121 PNFVGYQAADG-SSFSGNILGGH--TSWGNLPPSLRPPPEGGYPPFPFVDWG 167

[Close]

BLAST of IVF0016813 vs. ExPASy Swiss-Prot
Match: Q2TA39 (Zinc finger matrin-type protein 5 OS=Bos taurus OX=9913 GN=ZMAT5 PE=2 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 7.6e-16
Identity = 55/169 (32.54%), Postives = 79/169 (46.75%), Query Frame = 0


Query: 5   KYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDSNQTFPHSFHFRPRICNRFL 64
           +Y+CDYCD+ FQD    RK+HL  L H KAK LW+D F+D+        + RP  C +FL
Sbjct: 4   RYFCDYCDRSFQDNLHNRKKHLNGLQHLKAKKLWYDMFRDAAAILLDEQNKRP--CRKFL 63

Query: 65  STGFCQYGDSCKYFH--PKNNHNDNTHNSSSHPIAGFP-ENNQPPNVPFNRFVDGNSSST 124
            TG C +G +C++ H   ++    +           +P +  + P V    +++  +   
Sbjct: 64  LTGQCDFGSNCRFSHMSERDLQELSVQVEEERRAREWPLDVAELPEVCLEDWLEKRAKRL 123

Query: 125 GSLVSDR----------LGTSW---GNLPPSLMPPPEGGYPPLPFVDWG 158
            S  S R              W     LPPSL  PP GG+P  P V WG
Sbjct: 124 SSAPSSRAEPVRATVFQYPVGWPPVQELPPSLRAPPPGGWPLQPSVQWG 170

[Close]

BLAST of IVF0016813 vs. ExPASy Swiss-Prot
Match: Q9UDW3 (Zinc finger matrin-type protein 5 OS=Homo sapiens OX=9606 GN=ZMAT5 PE=1 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.8e-15
Identity = 55/169 (32.54%), Postives = 75/169 (44.38%), Query Frame = 0


Query: 5   KYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDSNQTFPHSFHFRPRICNRFL 64
           +Y+CDYCD+ FQD    RK+HL  L H KAK +W+D F+D+        + RP  C +FL
Sbjct: 4   RYFCDYCDRSFQDNLHNRKKHLNGLQHLKAKKVWYDMFRDAAAILLDEQNKRP--CRKFL 63

Query: 65  STGFCQYGDSCKYFHPKNNHNDNTHNSSSHPIAGFPENNQPPNVPFNRFVD------GNS 124
            TG C +G +C++ H                          P +P     D         
Sbjct: 64  LTGQCDFGSNCRFSHMSERDLQELSIQVEEERRAREWLLDAPELPEGHLEDWLEKRAKRL 123

Query: 125 SSTGSLVSDRLGTS-------W---GNLPPSLMPPPEGGYPPLPFVDWG 158
           SS  S  ++ + T+       W     LPPSL  PP GG+P  P V WG
Sbjct: 124 SSAPSSRAEPIRTTVFQYPVGWPPVQELPPSLRAPPPGGWPLQPRVQWG 170

[Close]

BLAST of IVF0016813 vs. ExPASy Swiss-Prot
Match: Q9CQR5 (Zinc finger matrin-type protein 5 OS=Mus musculus OX=10090 GN=Zmat5 PE=2 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.5e-14
Identity = 53/173 (30.64%), Postives = 76/173 (43.93%), Query Frame = 0


Query: 5   KYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDSNQTFPHSFHFRPRICNRFL 64
           +Y+CDYCD+ FQD    RK+HL  L H KAK +W+D F+D+        + RP  C +FL
Sbjct: 4   RYFCDYCDRSFQDNLHNRKKHLNGLQHLKAKKVWYDMFRDAAAILLDEQNKRP--CRKFL 63

Query: 65  STGFCQYGDSCKYFHPKNN-------HNDNTHNSSSHPIAGFPENNQPPNVPFNRFVDGN 124
            TG C +G +C++ H             +    +   P+    E  + P      +++  
Sbjct: 64  LTGQCDFGSNCRFSHMSEQDLQELSVQVEEERRAREWPL----ETAELPEGHLEDWLEKR 123

Query: 125 SSSTGSLVSDR----------LGTSW---GNLPPSLMPPPEGGYPPLPFVDWG 158
           +    S  S R              W     LPPSL  PP GG+  L  V WG
Sbjct: 124 AKRLSSAPSSRAEPIRTTVFQYPVGWPPMQELPPSLRAPPPGGWSVLSKVQWG 170

[Close]

BLAST of IVF0016813 vs. ExPASy Swiss-Prot
Match: Q6AXL8 (Zinc finger matrin-type protein 5 OS=Danio rerio OX=7955 GN=zmat5 PE=2 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 4.6e-13
Identity = 49/178 (27.53%), Postives = 75/178 (42.13%), Query Frame = 0


Query: 5   KYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDSNQTFPHSFHFRPRICNRFL 64
           +YYCDYCD+ FQD    RK+HL  + H +AK  WFD+F+D+      +      +C +F+
Sbjct: 4   RYYCDYCDRSFQDNLHNRKKHLNGVQHHRAKKAWFDNFRDAATLL--NDERSKEVCRKFV 63

Query: 65  STGFCQYGDSCKYFHPKNNH--------NDNTHNSSSHPIAGFPENNQPPNVPFNRFVDG 124
            TG C +G SC++ H             +D             P+ +       + ++  
Sbjct: 64  QTGQCVFGTSCRFSHMSEKQMKMLEQKIDDEKRQKED------PDQDGSSERSVDEWLSR 123

Query: 125 NSSSTGSLVSDRL-----------------GTSWGNLPPSLMPPPEGGYPPLPFVDWG 158
                 +L S R+                   S  +LPPSL PPP GG+      +WG
Sbjct: 124 REKKLAALTSGRVLRMEEEECTENIEIPPYLLSIPDLPPSLHPPPAGGWRVTVHNEWG 173

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BLAST of IVF0016813 vs. ExPASy TrEMBL
Match: A0A5D3CFN3 (Zinc finger CCCH domain-containing protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G004580 PE=4 SV=1)

HSP 1 Score: 345.9 bits (886), Expect = 8.9e-92
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0


Query: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDSNQTFPHSFHFRPRIC 60
           MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDSNQTFPHSFHFRPRIC
Sbjct: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDSNQTFPHSFHFRPRIC 60

Query: 61  NRFLSTGFCQYGDSCKYFHPKNNHNDNTHNSSSHPIAGFPENNQPPNVPFNRFVDGNSSS 120
           NRFLSTGFCQYGDSCKYFHPKNNHNDNTHNSSSHPIAGFPENNQPPNVPFNRFVDGNSSS
Sbjct: 61  NRFLSTGFCQYGDSCKYFHPKNNHNDNTHNSSSHPIAGFPENNQPPNVPFNRFVDGNSSS 120

Query: 121 TGSLVSDRLGTSWGNLPPSLMPPPEGGYPPLPFVDWG 158
           TGSLVSDRLGTSWGNLPPSLMPPPEGGYPPLPFVDWG
Sbjct: 121 TGSLVSDRLGTSWGNLPPSLMPPPEGGYPPLPFVDWG 157

[Close]

BLAST of IVF0016813 vs. ExPASy TrEMBL
Match: A0A1S3BQ25 (zinc finger CCCH domain-containing protein 3 OS=Cucumis melo OX=3656 GN=LOC103492103 PE=4 SV=1)

HSP 1 Score: 345.9 bits (886), Expect = 8.9e-92
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0


Query: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDSNQTFPHSFHFRPRIC 60
           MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDSNQTFPHSFHFRPRIC
Sbjct: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDSNQTFPHSFHFRPRIC 60

Query: 61  NRFLSTGFCQYGDSCKYFHPKNNHNDNTHNSSSHPIAGFPENNQPPNVPFNRFVDGNSSS 120
           NRFLSTGFCQYGDSCKYFHPKNNHNDNTHNSSSHPIAGFPENNQPPNVPFNRFVDGNSSS
Sbjct: 61  NRFLSTGFCQYGDSCKYFHPKNNHNDNTHNSSSHPIAGFPENNQPPNVPFNRFVDGNSSS 120

Query: 121 TGSLVSDRLGTSWGNLPPSLMPPPEGGYPPLPFVDWG 158
           TGSLVSDRLGTSWGNLPPSLMPPPEGGYPPLPFVDWG
Sbjct: 121 TGSLVSDRLGTSWGNLPPSLMPPPEGGYPPLPFVDWG 157

[Close]

BLAST of IVF0016813 vs. ExPASy TrEMBL
Match: A0A0A0M1B0 (C3H1-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G560650 PE=4 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 6.8e-84
Identity = 146/157 (92.99%), Postives = 153/157 (97.45%), Query Frame = 0


Query: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDSNQTFPHSFHFRPRIC 60
           MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKD NQ+FPHSFHFRPRIC
Sbjct: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRIC 60

Query: 61  NRFLSTGFCQYGDSCKYFHPKNNHNDNTHNSSSHPIAGFPENNQPPNVPFNRFVDGNSSS 120
           NRFLSTGFCQYGDSCKYFHP NN+NDNT+NSSS+P+AGFPEN QPPNVP NRFVDGNSSS
Sbjct: 61  NRFLSTGFCQYGDSCKYFHP-NNNNDNTYNSSSYPMAGFPENYQPPNVPVNRFVDGNSSS 120

Query: 121 TGSLVSDRLGTSWGNLPPSLMPPPEGGYPPLPFVDWG 158
           TGSL+SDRLGTSWGNLPPSLMPPP+GGYPPLPFVDWG
Sbjct: 121 TGSLISDRLGTSWGNLPPSLMPPPDGGYPPLPFVDWG 156

[Close]

BLAST of IVF0016813 vs. ExPASy TrEMBL
Match: A0A6J1JFY8 (zinc finger CCCH domain-containing protein 3 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111486532 PE=4 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 5.4e-65
Identity = 127/157 (80.89%), Postives = 134/157 (85.35%), Query Frame = 0


Query: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDSNQTFPHSFHFRPRIC 60
           MPLGKYYCDYC+KQFQDTPFARKRHLQSLSHQKAKALWFDSF+DSNQ  P S  F  R+C
Sbjct: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFRDSNQ--PFSDAFGTRVC 60

Query: 61  NRFLSTGFCQYGDSCKYFHPKNNHNDNTHNSSSHPIAGFPENNQPPNVPFNRFVDGNSSS 120
           NRFL+TGFCQYGDSCKYFH KN    N   SSS PIAGFPENNQ PNVP N+F++G SS 
Sbjct: 61  NRFLTTGFCQYGDSCKYFHSKN----NLQYSSSQPIAGFPENNQAPNVPVNQFMEG-SSL 120

Query: 121 TGSLVSDRLGTSWGNLPPSLMPPPEGGYPPLPFVDWG 158
           TGSL  DRL TSWGNLPPSLMPPPEGGYPPLPFVDWG
Sbjct: 121 TGSL--DRLRTSWGNLPPSLMPPPEGGYPPLPFVDWG 148

[Close]

BLAST of IVF0016813 vs. ExPASy TrEMBL
Match: A0A6J1EU59 (zinc finger CCCH domain-containing protein 3 OS=Cucurbita moschata OX=3662 GN=LOC111437782 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 4.6e-64
Identity = 123/157 (78.34%), Postives = 133/157 (84.71%), Query Frame = 0


Query: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDSNQTFPHSFHFRPRIC 60
           MPLGKYYCDYC+KQFQDTPFARKRHLQSLSH KAKALWFDSF+DSNQ   H+  F  R+C
Sbjct: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHHKAKALWFDSFRDSNQPLSHA--FPTRLC 60

Query: 61  NRFLSTGFCQYGDSCKYFHPKNNHNDNTHNSSSHPIAGFPENNQPPNVPFNRFVDGNSSS 120
           NRFL+TGFCQYGDSC YFH     N+N   SSSHPIAGFPENNQ PN+P N+F++G SS 
Sbjct: 61  NRFLTTGFCQYGDSCNYFH----SNNNPQYSSSHPIAGFPENNQAPNIPVNQFMEG-SSL 120

Query: 121 TGSLVSDRLGTSWGNLPPSLMPPPEGGYPPLPFVDWG 158
           TGSL  DRL TSWGNLPPSLMPPPEGGYPPLPFVDWG
Sbjct: 121 TGSL--DRLRTSWGNLPPSLMPPPEGGYPPLPFVDWG 148

[Close]

BLAST of IVF0016813 vs. NCBI nr
Match: XP_008450521.1 (PREDICTED: zinc finger CCCH domain-containing protein 3 [Cucumis melo] >KAA0050958.1 zinc finger CCCH domain-containing protein 3 [Cucumis melo var. makuwa] >TYK10305.1 zinc finger CCCH domain-containing protein 3 [Cucumis melo var. makuwa])

HSP 1 Score: 348 bits (892), Expect = 2.67e-121
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0


Query: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDSNQTFPHSFHFRPRIC 60
           MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDSNQTFPHSFHFRPRIC
Sbjct: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDSNQTFPHSFHFRPRIC 60

Query: 61  NRFLSTGFCQYGDSCKYFHPKNNHNDNTHNSSSHPIAGFPENNQPPNVPFNRFVDGNSSS 120
           NRFLSTGFCQYGDSCKYFHPKNNHNDNTHNSSSHPIAGFPENNQPPNVPFNRFVDGNSSS
Sbjct: 61  NRFLSTGFCQYGDSCKYFHPKNNHNDNTHNSSSHPIAGFPENNQPPNVPFNRFVDGNSSS 120

Query: 121 TGSLVSDRLGTSWGNLPPSLMPPPEGGYPPLPFVDWG 157
           TGSLVSDRLGTSWGNLPPSLMPPPEGGYPPLPFVDWG
Sbjct: 121 TGSLVSDRLGTSWGNLPPSLMPPPEGGYPPLPFVDWG 157

[Close]

BLAST of IVF0016813 vs. NCBI nr
Match: XP_004135569.1 (zinc finger CCCH domain-containing protein 3 [Cucumis sativus] >KGN65981.1 hypothetical protein Csa_007019 [Cucumis sativus])

HSP 1 Score: 322 bits (824), Expect = 6.08e-111
Identity = 146/157 (92.99%), Postives = 152/157 (96.82%), Query Frame = 0


Query: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDSNQTFPHSFHFRPRIC 60
           MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKD NQ+FPHSFHFRPRIC
Sbjct: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRIC 60

Query: 61  NRFLSTGFCQYGDSCKYFHPKNNHNDNTHNSSSHPIAGFPENNQPPNVPFNRFVDGNSSS 120
           NRFLSTGFCQYGDSCKYFHP NN NDNT+NSSS+P+AGFPEN QPPNVP NRFVDGNSSS
Sbjct: 61  NRFLSTGFCQYGDSCKYFHPNNN-NDNTYNSSSYPMAGFPENYQPPNVPVNRFVDGNSSS 120

Query: 121 TGSLVSDRLGTSWGNLPPSLMPPPEGGYPPLPFVDWG 157
           TGSL+SDRLGTSWGNLPPSLMPPP+GGYPPLPFVDWG
Sbjct: 121 TGSLISDRLGTSWGNLPPSLMPPPDGGYPPLPFVDWG 156

[Close]

BLAST of IVF0016813 vs. NCBI nr
Match: XP_038879279.1 (zinc finger CCCH domain-containing protein 3 [Benincasa hispida])

HSP 1 Score: 283 bits (723), Expect = 1.54e-95
Identity = 134/159 (84.28%), Postives = 142/159 (89.31%), Query Frame = 0


Query: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDSNQTFPHSFHFRPRIC 60
           MPLGKYYCDYC+KQFQDTPFARKRHLQSLSHQKAKALWFDSFKD NQ   H+F  RP  C
Sbjct: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDPNQPLFHAF--RPGFC 60

Query: 61  NRFLSTGFCQYGDSCKYFHPKNNHNDN-THNSSSHPIAGFPENNQPPNVPFNRFVDGNSS 120
           NRFL+TGFCQYGDSCKYFHP NN+N+N THNS+SHPIAGFPENNQPPN P N+F DG SS
Sbjct: 61  NRFLTTGFCQYGDSCKYFHPNNNYNNNNTHNSTSHPIAGFPENNQPPNFPVNQFADG-SS 120

Query: 121 STGSLVSDRLG-TSWGNLPPSLMPPPEGGYPPLPFVDWG 157
            TGSLVSD +G TSWGNLPPSLMPPPEGGYPPLPFVDWG
Sbjct: 121 FTGSLVSDSMGRTSWGNLPPSLMPPPEGGYPPLPFVDWG 156

[Close]

BLAST of IVF0016813 vs. NCBI nr
Match: XP_022989487.1 (zinc finger CCCH domain-containing protein 3 isoform X1 [Cucurbita maxima] >XP_022989488.1 zinc finger CCCH domain-containing protein 3 isoform X1 [Cucurbita maxima])

HSP 1 Score: 258 bits (660), Expect = 4.71e-86
Identity = 127/157 (80.89%), Postives = 134/157 (85.35%), Query Frame = 0


Query: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDSNQTFPHSFHFRPRIC 60
           MPLGKYYCDYC+KQFQDTPFARKRHLQSLSHQKAKALWFDSF+DSNQ  P S  F  R+C
Sbjct: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFRDSNQ--PFSDAFGTRVC 60

Query: 61  NRFLSTGFCQYGDSCKYFHPKNNHNDNTHNSSSHPIAGFPENNQPPNVPFNRFVDGNSSS 120
           NRFL+TGFCQYGDSCKYFH KNN       SSS PIAGFPENNQ PNVP N+F++G SS 
Sbjct: 61  NRFLTTGFCQYGDSCKYFHSKNN----LQYSSSQPIAGFPENNQAPNVPVNQFMEG-SSL 120

Query: 121 TGSLVSDRLGTSWGNLPPSLMPPPEGGYPPLPFVDWG 157
           TGSL  DRL TSWGNLPPSLMPPPEGGYPPLPFVDWG
Sbjct: 121 TGSL--DRLRTSWGNLPPSLMPPPEGGYPPLPFVDWG 148

[Close]

BLAST of IVF0016813 vs. NCBI nr
Match: XP_022931617.1 (zinc finger CCCH domain-containing protein 3 [Cucurbita moschata] >XP_022931618.1 zinc finger CCCH domain-containing protein 3 [Cucurbita moschata])

HSP 1 Score: 256 bits (654), Expect = 3.87e-85
Identity = 123/157 (78.34%), Postives = 133/157 (84.71%), Query Frame = 0


Query: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDSNQTFPHSFHFRPRIC 60
           MPLGKYYCDYC+KQFQDTPFARKRHLQSLSH KAKALWFDSF+DSNQ   H+F    R+C
Sbjct: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHHKAKALWFDSFRDSNQPLSHAFP--TRLC 60

Query: 61  NRFLSTGFCQYGDSCKYFHPKNNHNDNTHNSSSHPIAGFPENNQPPNVPFNRFVDGNSSS 120
           NRFL+TGFCQYGDSC YFH     N+N   SSSHPIAGFPENNQ PN+P N+F++G SS 
Sbjct: 61  NRFLTTGFCQYGDSCNYFHS----NNNPQYSSSHPIAGFPENNQAPNIPVNQFMEG-SSL 120

Query: 121 TGSLVSDRLGTSWGNLPPSLMPPPEGGYPPLPFVDWG 157
           TGSL  DRL TSWGNLPPSLMPPPEGGYPPLPFVDWG
Sbjct: 121 TGSL--DRLRTSWGNLPPSLMPPPEGGYPPLPFVDWG 148

[Close]

BLAST of IVF0016813 vs. TAIR 10
Match: AT5G26749.1 (C2H2 and C2HC zinc fingers superfamily protein )

HSP 1 Score: 152.9 bits (385), Expect = 2.1e-37
Identity = 79/158 (50.00%), Postives = 96/158 (60.76%), Query Frame = 0


Query: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDSNQTFPHSFHFRPR-I 60
           MP GKYYCDYC+K+FQDT  ARKRHLQS  H +AKALW+ S   S+   P   +F  + +
Sbjct: 1   MPSGKYYCDYCEKEFQDTQVARKRHLQSKPHLRAKALWYSS-SSSDLVNPQVSNFATKGL 60

Query: 61  CNRFLSTGFCQYGDSCKYFHPKNNHNDNTHNSSSHPIAGFPENNQPPNVPFNRFVDGNSS 120
           CNRF+++ FC +GDSC+YFHP NN              GF  N Q      N+     S+
Sbjct: 61  CNRFITSNFCPFGDSCRYFHPNNNTGS----------TGFTNNTQLRVDMLNQQHIQGST 120

Query: 121 STGSLVSDRLGTSWGNLPPSLMPPPEGGYPPLPFVDWG 158
                VS R GT W +LPPSL PPPE GYP LPF+DWG
Sbjct: 121 LNRDFVSGRPGTGWFDLPPSLKPPPEQGYPQLPFIDWG 147

[Close]

BLAST of IVF0016813 vs. TAIR 10
Match: AT5G26749.2 (C2H2 and C2HC zinc fingers superfamily protein )

HSP 1 Score: 141.4 bits (355), Expect = 6.4e-34
Identity = 79/177 (44.63%), Postives = 96/177 (54.24%), Query Frame = 0


Query: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDSNQTFPHSFHFRPR-I 60
           MP GKYYCDYC+K+FQDT  ARKRHLQS  H +AKALW+ S   S+   P   +F  + +
Sbjct: 1   MPSGKYYCDYCEKEFQDTQVARKRHLQSKPHLRAKALWYSS-SSSDLVNPQVSNFATKGL 60

Query: 61  CNRFLST-------------------GFCQYGDSCKYFHPKNNHNDNTHNSSSHPIAGFP 120
           CNRF+++                    FC +GDSC+YFHP NN              GF 
Sbjct: 61  CNRFITSVRRIDFVSLCSSFLAISGCNFCPFGDSCRYFHPNNNTGS----------TGFT 120

Query: 121 ENNQPPNVPFNRFVDGNSSSTGSLVSDRLGTSWGNLPPSLMPPPEGGYPPLPFVDWG 158
            N Q      N+     S+     VS R GT W +LPPSL PPPE GYP LPF+DWG
Sbjct: 121 NNTQLRVDMLNQQHIQGSTLNRDFVSGRPGTGWFDLPPSLKPPPEQGYPQLPFIDWG 166

[Close]

BLAST of IVF0016813 vs. TAIR 10
Match: AT2G32930.1 (zinc finger nuclease 2 )

HSP 1 Score: 42.0 bits (97), Expect = 5.3e-04
Identity = 18/31 (58.06%), Postives = 21/31 (67.74%), Query Frame = 0


Query: 51  HSFHFRPRICNRFLSTGFCQYGDSCKYFHPK 82
           HSF  R   C  F++TG C+YGD CKY HPK
Sbjct: 259 HSFSERAE-CRFFMNTGTCKYGDDCKYSHPK 288

[Close]

BLAST of IVF0016813 vs. TAIR 10
Match: AT2G32930.2 (zinc finger nuclease 2 )

HSP 1 Score: 42.0 bits (97), Expect = 5.3e-04
Identity = 18/31 (58.06%), Postives = 21/31 (67.74%), Query Frame = 0


Query: 51  HSFHFRPRICNRFLSTGFCQYGDSCKYFHPK 82
           HSF  R   C  F++TG C+YGD CKY HPK
Sbjct: 259 HSFSERAE-CRFFMNTGTCKYGDDCKYSHPK 288

[Close]

BLAST of IVF0016813 vs. TAIR 10
Match: AT1G01350.1 (Zinc finger (CCCH-type/C3HC4-type RING finger) family protein )

HSP 1 Score: 41.6 bits (96), Expect = 6.9e-04
Identity = 19/61 (31.15%), Postives = 32/61 (52.46%), Query Frame = 0


Query: 24  RHLQSLSHQKAKALWFDSFKDSNQTFPHSFHFRPRICNRFLSTGFCQYGDSCKYFHPKNN 83
           R  Q++S +KA          ++      F ++P IC  +  TG+C YGDSCK+ H + +
Sbjct: 170 RREQTISSEKAGGSHGPLRASAHIRVSARFDYQPDICKDYKETGYCGYGDSCKFLHDRGD 229

Query: 84  H 85
           +
Sbjct: 230 Y 230

The following BLAST results are available for this feature:

BLAST of IVF0016813 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0JP11	2.5e-35	48.84	Zinc finger CCCH domain-containing protein 3 OS=Oryza sativa subsp. japonica OX=...	[more]
Q2TA39	7.6e-16	32.54	Zinc finger matrin-type protein 5 OS=Bos taurus OX=9913 GN=ZMAT5 PE=2 SV=1	[more]
Q9UDW3	3.8e-15	32.54	Zinc finger matrin-type protein 5 OS=Homo sapiens OX=9606 GN=ZMAT5 PE=1 SV=1	[more]
Q9CQR5	2.5e-14	30.64	Zinc finger matrin-type protein 5 OS=Mus musculus OX=10090 GN=Zmat5 PE=2 SV=1	[more]
Q6AXL8	4.6e-13	27.53	Zinc finger matrin-type protein 5 OS=Danio rerio OX=7955 GN=zmat5 PE=2 SV=1	[more]

BLAST of IVF0016813 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CFN3	8.9e-92	100.00	Zinc finger CCCH domain-containing protein 3 OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A1S3BQ25	8.9e-92	100.00	zinc finger CCCH domain-containing protein 3 OS=Cucumis melo OX=3656 GN=LOC10349...	[more]
A0A0A0M1B0	6.8e-84	92.99	C3H1-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G560650 P...	[more]
A0A6J1JFY8	5.4e-65	80.89	zinc finger CCCH domain-containing protein 3 isoform X1 OS=Cucurbita maxima OX=3...	[more]
A0A6J1EU59	4.6e-64	78.34	zinc finger CCCH domain-containing protein 3 OS=Cucurbita moschata OX=3662 GN=LO...	[more]

BLAST of IVF0016813 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008450521.1	2.67e-121	100.00	PREDICTED: zinc finger CCCH domain-containing protein 3 [Cucumis melo] >KAA00509...	[more]
XP_004135569.1	6.08e-111	92.99	zinc finger CCCH domain-containing protein 3 [Cucumis sativus] >KGN65981.1 hypot...	[more]
XP_038879279.1	1.54e-95	84.28	zinc finger CCCH domain-containing protein 3 [Benincasa hispida]	[more]
XP_022989487.1	4.71e-86	80.89	zinc finger CCCH domain-containing protein 3 isoform X1 [Cucurbita maxima] >XP_0...	[more]
XP_022931617.1	3.87e-85	78.34	zinc finger CCCH domain-containing protein 3 [Cucurbita moschata] >XP_022931618....	[more]

BLAST of IVF0016813 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G26749.1	2.1e-37	50.00	C2H2 and C2HC zinc fingers superfamily protein	[more]
AT5G26749.2	6.4e-34	44.63	C2H2 and C2HC zinc fingers superfamily protein	[more]
AT2G32930.1	5.3e-04	58.06	zinc finger nuclease 2	[more]
AT2G32930.2	5.3e-04	58.06	zinc finger nuclease 2	[more]
AT1G01350.1	6.9e-04	31.15	Zinc finger (CCCH-type/C3HC4-type RING finger) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003604	Matrin/U1-C-like, C2H2-type zinc finger	SMART	SM00451	ZnF_U1_5	coord: 3..38 e-value: 3.6E-5 score: 33.2
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 54..81 e-value: 5.7E-5 score: 32.5
IPR000571	Zinc finger, CCCH-type	PFAM	PF00642	zf-CCCH	coord: 56..81 e-value: 2.0E-7 score: 30.8
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 55..82 score: 14.220357
None	No IPR available	GENE3D	4.10.1000.10		coord: 48..115 e-value: 1.8E-6 score: 29.9
None	No IPR available	GENE3D	3.30.160.60	Classic Zinc Finger	coord: 3..47 e-value: 2.8E-9 score: 38.9
None	No IPR available	PANTHER	PTHR16465	NUCLEASE-RELATED	coord: 1..157
IPR013085	U1-C, C2H2-type zinc finger	PFAM	PF06220	zf-U1	coord: 5..36 e-value: 1.6E-9 score: 37.3
IPR036236	Zinc finger C2H2 superfamily	SUPERFAMILY	57667	beta-beta-alpha zinc fingers	coord: 4..52
IPR036855	Zinc finger, CCCH-type superfamily	SUPERFAMILY	90229	CCCH zinc finger	coord: 52..83

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0016813.4	IVF0016813.4	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005689	U12-type spliceosomal complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003676	nucleic acid binding