IVF0016796 (gene) Melon (IVF77) v1

Overview


Name	IVF0016796
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	RING-type E3 ubiquitin transferase
Location	chr09: 23038980 .. 23039832 (+)
RNA-Seq Expression	IVF0016796
Synteny	IVF0016796

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTCATCCGATGCGATTCACTCAATTCCTCTCTTTGGAGCTAAAGAAAGAGAGAGAAAATGCGGCCAACTCCTTTAGACGCCGACGAGACCGTCCGCTTCCAACCACCGCCATCGCCTCCGTGCCACGACCTCCGCGCCTGTACTTGGCGACCGTACTCCAATTCCAGAGACTTCGAAGCCAACGCCGCCGTCGTCGTCATCATCCTCCTCTGTGGTCTCATCTGCGCTCTCGCTCTCAACACCGCCATCCGCTGCTTCCTCCGTCGTCGCGGCACTTCCGATGATGATTCGAATGATAGCCGGCAGGAGGAACTTCAAGAGGAGACGAAGCCGACGCTAGTGGAAAAATTGAAGATGGCTCCGGCACTCGTGTTCTCGGCGGAAATGAAGCCGAAACTCGCCGGTGCGGAAGCAGAGTGTACGATTTGCTTGACAGAGTTCTCGGAAGGGGAAGAGATTCGAGTATTGGCGATTTGTAAGCACGGATTTCATGTTCAGTGTATTCAAACGTGGTTGATTTCACATTCTTCTTGTCCAACTTGCCGCCGTAGTTACCTCCCTCCCTCGCCGTCGTCCTCTGTTAGCGGCGGCGACGGAAACCCCTGAGATTAGATTAGAAAAACCGAAATTTCTTCAGATAGCCGCCGTCGTAGCTGTTTGATAGCAATTCGAATCGAGCATTTGCTTCAATTTACATCTACTTCTTCCCCTTTCCCTTTTCCTCCCTCGCTCTCGAAACTCTTCCGATCAACTAAAAAAATGAATTGGATTAACGGTTTTGTTAATCCGTAATTGCAATACTCCGGTTGAGAAAATGAGAATTTTTAGGTAATTTAGTATACTTGATCTCT

mRNA sequence

CTTTCATCCGATGCGATTCACTCAATTCCTCTCTTTGGAGCTAAAGAAAGAGAGAGAAAATGCGGCCAACTCCTTTAGACGCCGACGAGACCGTCCGCTTCCAACCACCGCCATCGCCTCCGTGCCACGACCTCCGCGCCTGTACTTGGCGACCGTACTCCAATTCCAGAGACTTCGAAGCCAACGCCGCCGTCGTCGTCATCATCCTCCTCTGTGGTCTCATCTGCGCTCTCGCTCTCAACACCGCCATCCGCTGCTTCCTCCGTCGTCGCGGCACTTCCGATGATGATTCGAATGATAGCCGGCAGGAGGAACTTCAAGAGGAGACGAAGCCGACGCTAGTGGAAAAATTGAAGATGGCTCCGGCACTCGTGTTCTCGGCGGAAATGAAGCCGAAACTCGCCGGTGCGGAAGCAGAGTGTACGATTTGCTTGACAGAGTTCTCGGAAGGGGAAGAGATTCGAGTATTGGCGATTTGTAAGCACGGATTTCATGTTCAGTGTATTCAAACGTGGTTGATTTCACATTCTTCTTGTCCAACTTGCCGCCGTAGTTACCTCCCTCCCTCGCCGTCGTCCTCTGTTAGCGGCGGCGACGGAAACCCCTGAGATTAGATTAGAAAAACCGAAATTTCTTCAGATAGCCGCCGTCGTAGCTGTTTGATAGCAATTCGAATCGAGCATTTGCTTCAATTTACATCTACTTCTTCCCCTTTCCCTTTTCCTCCCTCGCTCTCGAAACTCTTCCGATCAACTAAAAAAATGAATTGGATTAACGGTTTTGTTAATCCGTAATTGCAATACTCCGGTTGAGAAAATGAGAATTTTTAGGTAATTTAGTATACTTGATCTCT

Coding sequence (CDS)

ATGCGGCCAACTCCTTTAGACGCCGACGAGACCGTCCGCTTCCAACCACCGCCATCGCCTCCGTGCCACGACCTCCGCGCCTGTACTTGGCGACCGTACTCCAATTCCAGAGACTTCGAAGCCAACGCCGCCGTCGTCGTCATCATCCTCCTCTGTGGTCTCATCTGCGCTCTCGCTCTCAACACCGCCATCCGCTGCTTCCTCCGTCGTCGCGGCACTTCCGATGATGATTCGAATGATAGCCGGCAGGAGGAACTTCAAGAGGAGACGAAGCCGACGCTAGTGGAAAAATTGAAGATGGCTCCGGCACTCGTGTTCTCGGCGGAAATGAAGCCGAAACTCGCCGGTGCGGAAGCAGAGTGTACGATTTGCTTGACAGAGTTCTCGGAAGGGGAAGAGATTCGAGTATTGGCGATTTGTAAGCACGGATTTCATGTTCAGTGTATTCAAACGTGGTTGATTTCACATTCTTCTTGTCCAACTTGCCGCCGTAGTTACCTCCCTCCCTCGCCGTCGTCCTCTGTTAGCGGCGGCGACGGAAACCCCTGA

Protein sequence

MRPTPLDADETVRFQPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALALNTAIRCFLRRRGTSDDDSNDSRQEELQEETKPTLVEKLKMAPALVFSAEMKPKLAGAEAECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLISHSSCPTCRRSYLPPSPSSSVSGGDGNP

Homology

[Close]

BLAST of IVF0016796 vs. ExPASy Swiss-Prot
Match: Q9FGJ6 (RING-H2 finger protein ATL79 OS=Arabidopsis thaliana OX=3702 GN=ATL79 PE=2 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 2.3e-32
Identity = 77/161 (47.83%), Postives = 104/161 (64.60%), Query Frame = 0


Query: 19  SPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALALNTAIRCFLRRRGTSDDDS 78
           +P C+    C W+PYSNS DF ANA+V++I+++  LICAL+L  AIRCFLR    ++DD 
Sbjct: 17  TPTCNS-HTCRWKPYSNSTDFTANASVLLILVISALICALSLYAAIRCFLRPTLETEDDH 76

Query: 79  NDSRQEELQEETKPTLVEKLKMAPALVFSAEMKPKLAGAEAECTICLTEFSEGEEIRVLA 138
                 E    + PT        P LV+S+++  +LAGAEAEC ICL+EF +GE I+VL 
Sbjct: 77  KP--DPEAAASSTPT-------TPTLVYSSDL--ELAGAEAECAICLSEFEQGESIQVLE 136

Query: 139 ICKHGFHVQCIQTWLISHSSCPTCRRSYL---PPSPSSSVS 177
            C+HGFHV+CI  WL + SSCPTCR S       +PSS ++
Sbjct: 137 KCQHGFHVKCIHKWLSTRSSCPTCRTSIFSQHSETPSSHIN 165

[Close]

BLAST of IVF0016796 vs. ExPASy Swiss-Prot
Match: Q9SG96 (RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 8.8e-24
Identity = 68/144 (47.22%), Postives = 88/144 (61.11%), Query Frame = 0


Query: 35  NSRDFEANAAVVVIILLCGLICALALNTAIRCFLR--RRGTSDDD-SNDSR-QEELQEET 94
           N   F+ N  +++  LLC LICAL+LN+A+RC LR  RR TSDD  SN S     L    
Sbjct: 25  NDTYFDTNMVIILAALLCALICALSLNSALRCVLRITRRFTSDDQVSNASNANANLGRLA 84

Query: 95  KPTLVEK--LKMAPALVFSAEMKPKLAGAEAECTICLTEFSEGEEIRVLAICKHGFHVQC 154
             T ++K  LK  P  ++ + +    A    EC ICL +F +GE++RVL  C HGFHV+C
Sbjct: 85  AATGLKKQALKQIPVGLYGSGIIDMKA---TECLICLGDFEDGEKVRVLPKCNHGFHVRC 144

Query: 155 IQTWLISHSSCPTCRRSYLPPSPS 173
           I TWL+S SSCPTCR+S L   PS
Sbjct: 145 IDTWLLSRSSCPTCRQSLLLEQPS 165

[Close]

BLAST of IVF0016796 vs. ExPASy Swiss-Prot
Match: Q9FLC6 (RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.0e-23
Identity = 64/148 (43.24%), Postives = 87/148 (58.78%), Query Frame = 0


Query: 35  NSRDFEANAAVVVIILLCGLICALALNTAIRCFLR--RRGTSDDDSNDSRQEELQEETKP 94
           N    + +  +++  LLC LICAL +N+ +RC LR  RR T ++D  D+     +   K 
Sbjct: 33  NIASMDTHMVIILAALLCALICALGINSVLRCVLRCTRRFTPNEDPVDTNANVAKGIKK- 92

Query: 95  TLVEKLKMAPALVFSAEMKPKLAGAEAECTICLTEFSEGEEIRVLAICKHGFHVQCIQTW 154
                LK+ P   +S E+K K      EC ICL +F EGE +RVL  C HGFHV+CI TW
Sbjct: 93  ---RALKVIPVDSYSPELKMK----ATECLICLGDFVEGETVRVLPKCNHGFHVKCIDTW 152

Query: 155 LISHSSCPTCRRSYLP-PSPSSSVSGGD 180
           L+SHSSCPTCR+S L   +P++    GD
Sbjct: 153 LLSHSSCPTCRQSLLEHQTPANGSRRGD 172

[Close]

BLAST of IVF0016796 vs. ExPASy Swiss-Prot
Match: Q6NQG7 (RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 4.1e-21
Identity = 54/132 (40.91%), Postives = 74/132 (56.06%), Query Frame = 0


Query: 32  PYSNSRDFEANAAVVVIILLCGLICALALNTAIRCFLRRRGTSDDDSNDSRQEELQEETK 91
           PY    +F+AN  +V+ +LLC L+C+L LN+ IRC LR       ++           T 
Sbjct: 45  PYVGDNNFDANVVMVLSVLLCALVCSLGLNSIIRCALRCSNLVPSEAGGDNYPVRLTNT- 104

Query: 92  PTLVEKLKMAPALVFSAEMKPKLAGAEAECTICLTEFSEGEEIRVLAICKHGFHVQCIQT 151
               + LK    + +S E+   L G + EC ICL+EF   E +++L  C HGFHV+CI  
Sbjct: 105 GVKRKALKSFQTVSYSTEL--NLPGLDTECAICLSEFVAEERVKLLPTCHHGFHVRCIDK 164

Query: 152 WLISHSSCPTCR 164
           WL SHSSCPTCR
Sbjct: 165 WLSSHSSCPTCR 173

[Close]

BLAST of IVF0016796 vs. ExPASy Swiss-Prot
Match: Q8LC69 (RING-H2 finger protein ATL8 OS=Arabidopsis thaliana OX=3702 GN=ATL8 PE=2 SV=2)

HSP 1 Score: 100.5 bits (249), Expect = 2.0e-20
Identity = 54/133 (40.60%), Postives = 74/133 (55.64%), Query Frame = 0


Query: 32  PYSNSRDFEANAAVVVIILLCGLICALALNTAIRCFLRRRGTSDDDSNDSRQEELQEETK 91
           P   S  F ++  +++ +LLC L C + L    RC   RR  S + S+ +    +    K
Sbjct: 17  PAEASPPFNSDLVLILAVLLCALTCIIGLIAVSRCAWLRRIASRNRSDQTHPPPVAAANK 76

Query: 92  PTLVEKLKMAPALVFSAEMKPKLAGAEAECTICLTEFSEGEEIRVLAICKHGFHVQCIQT 151
               + L+  P L +S +  P  A    EC ICLTEF+ G+E+RVL  C HGFHV CI T
Sbjct: 77  GLKKKVLRSLPKLTYSPDSPP--AEKLVECAICLTEFAAGDELRVLPQCGHGFHVSCIDT 136

Query: 152 WLISHSSCPTCRR 165
           WL SHSSCP+CR+
Sbjct: 137 WLGSHSSCPSCRQ 147

[Close]

BLAST of IVF0016796 vs. ExPASy TrEMBL
Match: A0A5D3C3S3 (RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G001240 PE=3 SV=1)

HSP 1 Score: 370.5 bits (950), Expect = 3.9e-99
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0


Query: 1   MRPTPLDADETVRFQPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALAL 60
           MRPTPLDADETVRFQPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALAL
Sbjct: 1   MRPTPLDADETVRFQPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALAL 60

Query: 61  NTAIRCFLRRRGTSDDDSNDSRQEELQEETKPTLVEKLKMAPALVFSAEMKPKLAGAEAE 120
           NTAIRCFLRRRGTSDDDSNDSRQEELQEETKPTLVEKLKMAPALVFSAEMKPKLAGAEAE
Sbjct: 61  NTAIRCFLRRRGTSDDDSNDSRQEELQEETKPTLVEKLKMAPALVFSAEMKPKLAGAEAE 120

Query: 121 CTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLISHSSCPTCRRSYLPPSPSSSVSGGDG 180
           CTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLISHSSCPTCRRSYLPPSPSSSVSGGDG
Sbjct: 121 CTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLISHSSCPTCRRSYLPPSPSSSVSGGDG 180

Query: 181 NP 183
           NP
Sbjct: 181 NP 182

[Close]

BLAST of IVF0016796 vs. ExPASy TrEMBL
Match: A0A1S3AU49 (RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103482889 PE=3 SV=1)

HSP 1 Score: 370.5 bits (950), Expect = 3.9e-99
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0


Query: 1   MRPTPLDADETVRFQPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALAL 60
           MRPTPLDADETVRFQPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALAL
Sbjct: 1   MRPTPLDADETVRFQPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALAL 60

Query: 61  NTAIRCFLRRRGTSDDDSNDSRQEELQEETKPTLVEKLKMAPALVFSAEMKPKLAGAEAE 120
           NTAIRCFLRRRGTSDDDSNDSRQEELQEETKPTLVEKLKMAPALVFSAEMKPKLAGAEAE
Sbjct: 61  NTAIRCFLRRRGTSDDDSNDSRQEELQEETKPTLVEKLKMAPALVFSAEMKPKLAGAEAE 120

Query: 121 CTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLISHSSCPTCRRSYLPPSPSSSVSGGDG 180
           CTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLISHSSCPTCRRSYLPPSPSSSVSGGDG
Sbjct: 121 CTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLISHSSCPTCRRSYLPPSPSSSVSGGDG 180

Query: 181 NP 183
           NP
Sbjct: 181 NP 182

[Close]

BLAST of IVF0016796 vs. ExPASy TrEMBL
Match: A0A0A0KNJ7 (RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_5G146260 PE=3 SV=1)

HSP 1 Score: 358.2 bits (918), Expect = 2.0e-95
Identity = 174/182 (95.60%), Postives = 180/182 (98.90%), Query Frame = 0


Query: 1   MRPTPLDADETVRFQPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALAL 60
           MRPTPLDAD+TVRFQPPPSPPCHDLRACTWRPYS+SRDFEANAAVVVIILLCGLICALAL
Sbjct: 1   MRPTPLDADDTVRFQPPPSPPCHDLRACTWRPYSSSRDFEANAAVVVIILLCGLICALAL 60

Query: 61  NTAIRCFLRRRGTSDDDSNDSRQEELQEETKPTLVEKLKMAPALVFSAEMKPKLAGAEAE 120
           NTAIRCFLRRRGTSDDDS+DSRQEEL EETKPTL++KLKMAPALVFSAEMKPKLAGAEAE
Sbjct: 61  NTAIRCFLRRRGTSDDDSSDSRQEELPEETKPTLMDKLKMAPALVFSAEMKPKLAGAEAE 120

Query: 121 CTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLISHSSCPTCRRSYLPPSPSSSVSGGDG 180
           CTICLTEFSEGEEIRVL+ICKHGFHVQCIQTWLISHSSCPTCRRSYLPPSPSSS SGGDG
Sbjct: 121 CTICLTEFSEGEEIRVLSICKHGFHVQCIQTWLISHSSCPTCRRSYLPPSPSSSASGGDG 180

Query: 181 NP 183
           NP
Sbjct: 181 NP 182

[Close]

BLAST of IVF0016796 vs. ExPASy TrEMBL
Match: A0A6J1ELF7 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111435709 PE=3 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 2.9e-86
Identity = 160/182 (87.91%), Postives = 173/182 (95.05%), Query Frame = 0


Query: 1   MRPTPLDADETVRFQ-PPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALA 60
           MRPTPLDAD+TV FQ PPP PPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLIC+LA
Sbjct: 1   MRPTPLDADDTVSFQPPPPPPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICSLA 60

Query: 61  LNTAIRCFLRRRGTSDDDSNDSRQEELQEETKPTLVEKLKMAPALVFSAEMKPKLAGAEA 120
           LNTAIRCFLRRRG +D++ +D+RQEEL++ETKPTLV+KLKMAPALVFSAE+KPKLAGAEA
Sbjct: 61  LNTAIRCFLRRRGDADENPSDTRQEELRDETKPTLVDKLKMAPALVFSAEIKPKLAGAEA 120

Query: 121 ECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLISHSSCPTCRRSYLPPSPSSSVSGGD 180
           ECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLI HSSCPTCR SYLPPSPSS+  GGD
Sbjct: 121 ECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRCSYLPPSPSSAAHGGD 180

Query: 181 GN 182
           G+
Sbjct: 181 GD 182

[Close]

BLAST of IVF0016796 vs. ExPASy TrEMBL
Match: A0A6J1I2W6 (RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111469099 PE=3 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 1.6e-84
Identity = 157/180 (87.22%), Postives = 170/180 (94.44%), Query Frame = 0


Query: 1   MRPTPLDADETVRFQPP-PSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALA 60
           MRPTPLDAD+TV ++PP P PPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLIC+LA
Sbjct: 1   MRPTPLDADDTVSYRPPSPPPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICSLA 60

Query: 61  LNTAIRCFLRRRGTSDDDSNDSRQEELQEETKPTLVEKLKMAPALVFSAEMKPKLAGAEA 120
           LNTAIRCFLRRRG +D++ +D+RQEEL++ETKPTLV+KLKMAPALVFS EMKPKLAGAEA
Sbjct: 61  LNTAIRCFLRRRGDADENPSDTRQEELRDETKPTLVDKLKMAPALVFSEEMKPKLAGAEA 120

Query: 121 ECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLISHSSCPTCRRSYLPPSPSSSVSGGD 180
           ECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLI HSSCPTCR SYLPPSPSS+  GGD
Sbjct: 121 ECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRCSYLPPSPSSAAHGGD 180

[Close]

BLAST of IVF0016796 vs. NCBI nr
Match: XP_008437481.1 (PREDICTED: RING-H2 finger protein ATL79-like [Cucumis melo] >KAA0042624.1 RING-H2 finger protein ATL79-like [Cucumis melo var. makuwa] >TYK06025.1 RING-H2 finger protein ATL79-like [Cucumis melo var. makuwa])

HSP 1 Score: 370 bits (949), Expect = 3.64e-129
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0


Query: 1   MRPTPLDADETVRFQPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALAL 60
           MRPTPLDADETVRFQPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALAL
Sbjct: 1   MRPTPLDADETVRFQPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALAL 60

Query: 61  NTAIRCFLRRRGTSDDDSNDSRQEELQEETKPTLVEKLKMAPALVFSAEMKPKLAGAEAE 120
           NTAIRCFLRRRGTSDDDSNDSRQEELQEETKPTLVEKLKMAPALVFSAEMKPKLAGAEAE
Sbjct: 61  NTAIRCFLRRRGTSDDDSNDSRQEELQEETKPTLVEKLKMAPALVFSAEMKPKLAGAEAE 120

Query: 121 CTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLISHSSCPTCRRSYLPPSPSSSVSGGDG 180
           CTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLISHSSCPTCRRSYLPPSPSSSVSGGDG
Sbjct: 121 CTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLISHSSCPTCRRSYLPPSPSSSVSGGDG 180

Query: 181 NP 182
           NP
Sbjct: 181 NP 182

[Close]

BLAST of IVF0016796 vs. NCBI nr
Match: XP_004145965.1 (RING-H2 finger protein ATL79 [Cucumis sativus] >KGN49952.1 hypothetical protein Csa_000591 [Cucumis sativus])

HSP 1 Score: 357 bits (917), Expect = 2.76e-124
Identity = 174/182 (95.60%), Postives = 180/182 (98.90%), Query Frame = 0


Query: 1   MRPTPLDADETVRFQPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALAL 60
           MRPTPLDAD+TVRFQPPPSPPCHDLRACTWRPYS+SRDFEANAAVVVIILLCGLICALAL
Sbjct: 1   MRPTPLDADDTVRFQPPPSPPCHDLRACTWRPYSSSRDFEANAAVVVIILLCGLICALAL 60

Query: 61  NTAIRCFLRRRGTSDDDSNDSRQEELQEETKPTLVEKLKMAPALVFSAEMKPKLAGAEAE 120
           NTAIRCFLRRRGTSDDDS+DSRQEEL EETKPTL++KLKMAPALVFSAEMKPKLAGAEAE
Sbjct: 61  NTAIRCFLRRRGTSDDDSSDSRQEELPEETKPTLMDKLKMAPALVFSAEMKPKLAGAEAE 120

Query: 121 CTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLISHSSCPTCRRSYLPPSPSSSVSGGDG 180
           CTICLTEFSEGEEIRVL+ICKHGFHVQCIQTWLISHSSCPTCRRSYLPPSPSSS SGGDG
Sbjct: 121 CTICLTEFSEGEEIRVLSICKHGFHVQCIQTWLISHSSCPTCRRSYLPPSPSSSASGGDG 180

Query: 181 NP 182
           NP
Sbjct: 181 NP 182

[Close]

BLAST of IVF0016796 vs. NCBI nr
Match: XP_038875287.1 (RING-H2 finger protein ATL79-like [Benincasa hispida])

HSP 1 Score: 344 bits (883), Expect = 4.53e-119
Identity = 168/181 (92.82%), Postives = 175/181 (96.69%), Query Frame = 0


Query: 1   MRPTPLDADETVRFQPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALAL 60
           MRPTPLDAD+TV FQPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALAL
Sbjct: 1   MRPTPLDADDTVAFQPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALAL 60

Query: 61  NTAIRCFLRRRGTSDDDSNDSRQEELQEETKPTLVEKLKMAPALVFSAEMKPKLAGAEAE 120
           NTAIRCFLRRRG++DDD +DSRQEELQ+ETKPTLV+KLKMAPALVFSAE KPKLAGAEAE
Sbjct: 61  NTAIRCFLRRRGSADDDPSDSRQEELQDETKPTLVDKLKMAPALVFSAETKPKLAGAEAE 120

Query: 121 CTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLISHSSCPTCRRSYLPPSPSSSVSGGDG 180
           CTICLTEF EGEEIRVLAICKHGFHVQCIQTWLI HSSCPTCRRSYLPPSP SSVSGGDG
Sbjct: 121 CTICLTEFLEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRRSYLPPSPPSSVSGGDG 180

[Close]

BLAST of IVF0016796 vs. NCBI nr
Match: XP_022928967.1 (RING-H2 finger protein ATL79-like [Cucurbita moschata] >KAG6579615.1 RING-H2 finger protein ATL79, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 327 bits (838), Expect = 3.40e-112
Identity = 160/182 (87.91%), Postives = 173/182 (95.05%), Query Frame = 0


Query: 1   MRPTPLDADETVRFQPPPSPP-CHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALA 60
           MRPTPLDAD+TV FQPPP PP CHDLRACTWRPYSNSRDFEANAAVVVIILLCGLIC+LA
Sbjct: 1   MRPTPLDADDTVSFQPPPPPPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICSLA 60

Query: 61  LNTAIRCFLRRRGTSDDDSNDSRQEELQEETKPTLVEKLKMAPALVFSAEMKPKLAGAEA 120
           LNTAIRCFLRRRG +D++ +D+RQEEL++ETKPTLV+KLKMAPALVFSAE+KPKLAGAEA
Sbjct: 61  LNTAIRCFLRRRGDADENPSDTRQEELRDETKPTLVDKLKMAPALVFSAEIKPKLAGAEA 120

Query: 121 ECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLISHSSCPTCRRSYLPPSPSSSVSGGD 180
           ECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLI HSSCPTCR SYLPPSPSS+  GGD
Sbjct: 121 ECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRCSYLPPSPSSAAHGGD 180

[Close]

BLAST of IVF0016796 vs. NCBI nr
Match: KAG7017072.1 (RING-H2 finger protein ATL79, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 327 bits (838), Expect = 3.65e-112
Identity = 160/182 (87.91%), Postives = 173/182 (95.05%), Query Frame = 0


Query: 1   MRPTPLDADETVRFQPPPSPP-CHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALA 60
           MRPTPLDAD+TV FQPPP PP CHDLRACTWRPYSNSRDFEANAAVVVIILLCGLIC+LA
Sbjct: 1   MRPTPLDADDTVSFQPPPPPPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICSLA 60

Query: 61  LNTAIRCFLRRRGTSDDDSNDSRQEELQEETKPTLVEKLKMAPALVFSAEMKPKLAGAEA 120
           LNTAIRCFLRRRG +D++ +D+RQEEL++ETKPTLV+KLKMAPALVFSAE+KPKLAGAEA
Sbjct: 61  LNTAIRCFLRRRGDADENPSDTRQEELRDETKPTLVDKLKMAPALVFSAEIKPKLAGAEA 120

Query: 121 ECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLISHSSCPTCRRSYLPPSPSSSVSGGD 180
           ECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLI HSSCPTCR SYLPPSPSS+  GGD
Sbjct: 121 ECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRCSYLPPSPSSAAHGGD 180

[Close]

BLAST of IVF0016796 vs. TAIR 10
Match: AT5G47610.1 (RING/U-box superfamily protein )

HSP 1 Score: 140.2 bits (352), Expect = 1.6e-33
Identity = 77/161 (47.83%), Postives = 104/161 (64.60%), Query Frame = 0


Query: 19  SPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALALNTAIRCFLRRRGTSDDDS 78
           +P C+    C W+PYSNS DF ANA+V++I+++  LICAL+L  AIRCFLR    ++DD 
Sbjct: 17  TPTCNS-HTCRWKPYSNSTDFTANASVLLILVISALICALSLYAAIRCFLRPTLETEDDH 76

Query: 79  NDSRQEELQEETKPTLVEKLKMAPALVFSAEMKPKLAGAEAECTICLTEFSEGEEIRVLA 138
                 E    + PT        P LV+S+++  +LAGAEAEC ICL+EF +GE I+VL 
Sbjct: 77  KP--DPEAAASSTPT-------TPTLVYSSDL--ELAGAEAECAICLSEFEQGESIQVLE 136

Query: 139 ICKHGFHVQCIQTWLISHSSCPTCRRSYL---PPSPSSSVS 177
            C+HGFHV+CI  WL + SSCPTCR S       +PSS ++
Sbjct: 137 KCQHGFHVKCIHKWLSTRSSCPTCRTSIFSQHSETPSSHIN 165

[Close]

BLAST of IVF0016796 vs. TAIR 10
Match: AT4G17245.1 (RING/U-box superfamily protein )

HSP 1 Score: 122.5 bits (306), Expect = 3.6e-28
Identity = 74/158 (46.84%), Postives = 90/158 (56.96%), Query Frame = 0


Query: 15  QPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALALNTAIRCFLRRRGTS 74
           QP  +  C    +C W+PYS+S DF ANA +++IIL C  IC L+L+ AIRC L R    
Sbjct: 10  QPELTSTCTS-HSCGWKPYSHSNDFAANAFLLLIILFCSFICVLSLHAAIRCCL-RPVLQ 69

Query: 75  DDDSNDSRQEELQEETKPTLVEKLKMAPALVFSAEMKPKLAGAEAECTICLTEFSEGEEI 134
                D   E    +  PTLV     +P L         LAG EAEC ICL+EF +G+ +
Sbjct: 70  HVPKPDPDLEATHPDAPPTLV----YSPGL--------NLAGNEAECIICLSEFQDGDTL 129

Query: 135 RVLAICKHGFHVQCIQTWL-ISHSSCPTCRRSYLPPSP 172
           RVL  CKHGFHV CIQ WL  SHSSCPTCR +     P
Sbjct: 130 RVLERCKHGFHVYCIQKWLSSSHSSCPTCRTNIFSSPP 153

[Close]

BLAST of IVF0016796 vs. TAIR 10
Match: AT3G10910.1 (RING/U-box superfamily protein )

HSP 1 Score: 111.7 bits (278), Expect = 6.3e-25
Identity = 68/144 (47.22%), Postives = 88/144 (61.11%), Query Frame = 0


Query: 35  NSRDFEANAAVVVIILLCGLICALALNTAIRCFLR--RRGTSDDD-SNDSR-QEELQEET 94
           N   F+ N  +++  LLC LICAL+LN+A+RC LR  RR TSDD  SN S     L    
Sbjct: 25  NDTYFDTNMVIILAALLCALICALSLNSALRCVLRITRRFTSDDQVSNASNANANLGRLA 84

Query: 95  KPTLVEK--LKMAPALVFSAEMKPKLAGAEAECTICLTEFSEGEEIRVLAICKHGFHVQC 154
             T ++K  LK  P  ++ + +    A    EC ICL +F +GE++RVL  C HGFHV+C
Sbjct: 85  AATGLKKQALKQIPVGLYGSGIIDMKA---TECLICLGDFEDGEKVRVLPKCNHGFHVRC 144

Query: 155 IQTWLISHSSCPTCRRSYLPPSPS 173
           I TWL+S SSCPTCR+S L   PS
Sbjct: 145 IDTWLLSRSSCPTCRQSLLLEQPS 165

[Close]

BLAST of IVF0016796 vs. TAIR 10
Match: AT5G05280.1 (RING/U-box superfamily protein )

HSP 1 Score: 110.5 bits (275), Expect = 1.4e-24
Identity = 64/148 (43.24%), Postives = 87/148 (58.78%), Query Frame = 0


Query: 35  NSRDFEANAAVVVIILLCGLICALALNTAIRCFLR--RRGTSDDDSNDSRQEELQEETKP 94
           N    + +  +++  LLC LICAL +N+ +RC LR  RR T ++D  D+     +   K 
Sbjct: 33  NIASMDTHMVIILAALLCALICALGINSVLRCVLRCTRRFTPNEDPVDTNANVAKGIKK- 92

Query: 95  TLVEKLKMAPALVFSAEMKPKLAGAEAECTICLTEFSEGEEIRVLAICKHGFHVQCIQTW 154
                LK+ P   +S E+K K      EC ICL +F EGE +RVL  C HGFHV+CI TW
Sbjct: 93  ---RALKVIPVDSYSPELKMK----ATECLICLGDFVEGETVRVLPKCNHGFHVKCIDTW 152

Query: 155 LISHSSCPTCRRSYLP-PSPSSSVSGGD 180
           L+SHSSCPTCR+S L   +P++    GD
Sbjct: 153 LLSHSSCPTCRQSLLEHQTPANGSRRGD 172

[Close]

BLAST of IVF0016796 vs. TAIR 10
Match: AT1G49230.1 (RING/U-box superfamily protein )

HSP 1 Score: 102.8 bits (255), Expect = 2.9e-22
Identity = 54/132 (40.91%), Postives = 74/132 (56.06%), Query Frame = 0


Query: 32  PYSNSRDFEANAAVVVIILLCGLICALALNTAIRCFLRRRGTSDDDSNDSRQEELQEETK 91
           PY    +F+AN  +V+ +LLC L+C+L LN+ IRC LR       ++           T 
Sbjct: 45  PYVGDNNFDANVVMVLSVLLCALVCSLGLNSIIRCALRCSNLVPSEAGGDNYPVRLTNT- 104

Query: 92  PTLVEKLKMAPALVFSAEMKPKLAGAEAECTICLTEFSEGEEIRVLAICKHGFHVQCIQT 151
               + LK    + +S E+   L G + EC ICL+EF   E +++L  C HGFHV+CI  
Sbjct: 105 GVKRKALKSFQTVSYSTEL--NLPGLDTECAICLSEFVAEERVKLLPTCHHGFHVRCIDK 164

Query: 152 WLISHSSCPTCR 164
           WL SHSSCPTCR
Sbjct: 165 WLSSHSSCPTCR 173

The following BLAST results are available for this feature:

BLAST of IVF0016796 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FGJ6	2.3e-32	47.83	RING-H2 finger protein ATL79 OS=Arabidopsis thaliana OX=3702 GN=ATL79 PE=2 SV=1	[more]
Q9SG96	8.8e-24	47.22	RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1	[more]
Q9FLC6	2.0e-23	43.24	RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1	[more]
Q6NQG7	4.1e-21	40.91	RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1	[more]
Q8LC69	2.0e-20	40.60	RING-H2 finger protein ATL8 OS=Arabidopsis thaliana OX=3702 GN=ATL8 PE=2 SV=2	[more]

BLAST of IVF0016796 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C3S3	3.9e-99	100.00	RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3AU49	3.9e-99	100.00	RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103482889 PE=3 ...	[more]
A0A0A0KNJ7	2.0e-95	95.60	RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_5G146260 PE...	[more]
A0A6J1ELF7	2.9e-86	87.91	RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111435709...	[more]
A0A6J1I2W6	1.6e-84	87.22	RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111469099 P...	[more]

BLAST of IVF0016796 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008437481.1	3.64e-129	100.00	PREDICTED: RING-H2 finger protein ATL79-like [Cucumis melo] >KAA0042624.1 RING-H...	[more]
XP_004145965.1	2.76e-124	95.60	RING-H2 finger protein ATL79 [Cucumis sativus] >KGN49952.1 hypothetical protein ...	[more]
XP_038875287.1	4.53e-119	92.82	RING-H2 finger protein ATL79-like [Benincasa hispida]	[more]
XP_022928967.1	3.40e-112	87.91	RING-H2 finger protein ATL79-like [Cucurbita moschata] >KAG6579615.1 RING-H2 fin...	[more]
KAG7017072.1	3.65e-112	87.91	RING-H2 finger protein ATL79, partial [Cucurbita argyrosperma subsp. argyrosperm...	[more]

BLAST of IVF0016796 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G47610.1	1.6e-33	47.83	RING/U-box superfamily protein	[more]
AT4G17245.1	3.6e-28	46.84	RING/U-box superfamily protein	[more]
AT3G10910.1	6.3e-25	47.22	RING/U-box superfamily protein	[more]
AT5G05280.1	1.4e-24	43.24	RING/U-box superfamily protein	[more]
AT1G49230.1	2.9e-22	40.91	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 121..162 e-value: 7.1E-6 score: 35.5
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 120..163 e-value: 4.7E-13 score: 49.3
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 121..163 score: 12.297489
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 76..168 e-value: 1.6E-20 score: 74.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..92
None	No IPR available	PANTHER	PTHR46905:SF1	RING-H2 FINGER PROTEIN ATL79-LIKE	coord: 14..176
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 120..169
IPR044602	RING-H2 finger protein ATL10/ATL75-79	PANTHER	PTHR46905	RING-H2 FINGER PROTEIN ATL78	coord: 14..176

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0016796.1	IVF0016796.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016740	transferase activity