IVF0016730 (gene) Melon (IVF77) v1

Overview
NameIVF0016730
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionNBS-LRR type resistance protein
Locationchr11: 8327983 .. 8328379 (-)
RNA-Seq ExpressionIVF0016730
SyntenyIVF0016730
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCGGCTCAGCTCCGCTCGTGACTGGGCTCAGTTCTCAGCTTGGTTCGCGGCTCAGTTTGGTTCAGCTCGCGGCTCACAGTTTGGTCCGACTTGGTTGGCTCGGTTCGAACCGCTTGAAGCTGAGGCAACCACGAACGGCTGGTTTCCGAGTCTAGGACGACGGTGGACGTTTCACAGATGATAGGCGAAGCGACAACAGATCGGAAATGGAGGGGTGGCCCGCTCGACTAAGGGCAGAAGCGGCCAACAGCCACTCGGGTACACGAGGTAGAGAGAGAACGTCAGAGATGGAGGAGCTTGCAAACGATCAGATGGCCGGTCTGGAGGACTCGTCGGTGGTTGACTGTTCACTGGCTGAAGACGGAAACGTGCAGATGCAGTCGGTTGAATGA

mRNA sequence

ATGGCTCGGCTCAGCTCCGCTCGTGACTGGGCTCAGTTCTCAGCTTGGTTCGCGGCTCAGTTTGGTTCAGCTCGCGGCTCACAGTTTGATGATAGGCGAAGCGACAACAGATCGGAAATGGAGGGGTGGCCCGCTCGACTAAGGGCAGAAGCGGCCAACAGCCACTCGGGTACACGAGGTAGAGAGAGAACGTCAGAGATGGAGGAGCTTGCAAACGATCAGATGGCCGGTCTGGAGGACTCGTCGGTGGTTGACTGTTCACTGGCTGAAGACGGAAACGTGCAGATGCAGTCGGTTGAATGA

Coding sequence (CDS)

ATGGCTCGGCTCAGCTCCGCTCGTGACTGGGCTCAGTTCTCAGCTTGGTTCGCGGCTCAGTTTGGTTCAGCTCGCGGCTCACAGTTTGATGATAGGCGAAGCGACAACAGATCGGAAATGGAGGGGTGGCCCGCTCGACTAAGGGCAGAAGCGGCCAACAGCCACTCGGGTACACGAGGTAGAGAGAGAACGTCAGAGATGGAGGAGCTTGCAAACGATCAGATGGCCGGTCTGGAGGACTCGTCGGTGGTTGACTGTTCACTGGCTGAAGACGGAAACGTGCAGATGCAGTCGGTTGAATGA

Protein sequence

MARLSSARDWAQFSAWFAAQFGSARGSQFDDRRSDNRSEMEGWPARLRAEAANSHSGTRGRERTSEMEELANDQMAGLEDSSVVDCSLAEDGNVQMQSVE
Homology
BLAST of IVF0016730 vs. ExPASy TrEMBL
Match: A0A5D3DUZ1 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold478G00110 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 5.2e-13
Identity = 47/75 (62.67%), Postives = 57/75 (76.00%), Query Frame = 0

Query: 26  GSQF-DDRRSDNRSEMEGWPARLRAEAANSHSGTRGRERTSEMEELANDQMAGLEDSSVV 85
           G +F +DRRS +RSEM+GWP RLRAEA + H  TR R+RT EMEELAN +M GLE+SS V
Sbjct: 241 GERFANDRRSSSRSEMDGWPTRLRAEAVDGHPVTRSRDRTLEMEELANGRMTGLENSSAV 300

Query: 86  DCSLAEDGNVQMQSV 100
           + S AED NV M+ V
Sbjct: 301 NYSRAEDDNVWMRLV 315

BLAST of IVF0016730 vs. ExPASy TrEMBL
Match: A0A5A7V1G1 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G002980 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.6e-06
Identity = 31/39 (79.49%), Postives = 35/39 (89.74%), Query Frame = 0

Query: 58  TRGRERTSEMEELANDQMAGLEDSSVVDCSLAEDGNVQM 97
           TR RERTSEMEEL N +MAGLEDSSVVDCS A+DGNV++
Sbjct: 129 TRWRERTSEMEELTNSRMAGLEDSSVVDCSQAKDGNVRI 167

BLAST of IVF0016730 vs. ExPASy TrEMBL
Match: A0A5D3DUE6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold478G00090 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 4.4e-04
Identity = 27/39 (69.23%), Postives = 33/39 (84.62%), Query Frame = 0

Query: 26  GSQF-DDRRSDNRSEMEGWPARLRAEAANSHSGTRGRER 64
           G +F ++RRSDNR EMEGWPARLRA++A+ H GTRG ER
Sbjct: 182 GGRFANNRRSDNRLEMEGWPARLRAKSASGHPGTRGEER 220

BLAST of IVF0016730 vs. NCBI nr
Match: KAA0063703.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK27120.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 83.2 bits (204), Expect = 1.98e-16
Identity = 45/70 (64.29%), Postives = 54/70 (77.14%), Query Frame = 0

Query: 30  DDRRSDNRSEMEGWPARLRAEAANSHSGTRGRERTSEMEELANDQMAGLEDSSVVDCSLA 89
           +DRRS +RSEM+GWP RLRAEA + H  TR R+RT EMEELAN +M GLE+SS V+ S A
Sbjct: 246 NDRRSSSRSEMDGWPTRLRAEAVDGHPVTRSRDRTLEMEELANGRMTGLENSSAVNYSRA 305

Query: 90  EDGNVQMQSV 99
           ED NV M+ V
Sbjct: 306 EDDNVWMRLV 315

BLAST of IVF0016730 vs. NCBI nr
Match: KAA0061993.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 60.1 bits (144), Expect = 1.37e-08
Identity = 31/39 (79.49%), Postives = 35/39 (89.74%), Query Frame = 0

Query: 58  TRGRERTSEMEELANDQMAGLEDSSVVDCSLAEDGNVQM 96
           TR RERTSEMEEL N +MAGLEDSSVVDCS A+DGNV++
Sbjct: 129 TRWRERTSEMEELTNSRMAGLEDSSVVDCSQAKDGNVRI 167

BLAST of IVF0016730 vs. NCBI nr
Match: TYK27118.1 (hypothetical protein E5676_scaffold478G00090 [Cucumis melo var. makuwa])

HSP 1 Score: 53.5 bits (127), Expect = 8.52e-06
Identity = 25/34 (73.53%), Postives = 30/34 (88.24%), Query Frame = 0

Query: 30  DDRRSDNRSEMEGWPARLRAEAANSHSGTRGRER 63
           ++RRSDNR EMEGWPARLRA++A+ H GTRG ER
Sbjct: 187 NNRRSDNRLEMEGWPARLRAKSASGHPGTRGEER 220

BLAST of IVF0016730 vs. NCBI nr
Match: TYJ95737.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 49.7 bits (117), Expect = 1.96e-04
Identity = 27/53 (50.94%), Postives = 34/53 (64.15%), Query Frame = 0

Query: 11  AQFSAWFAAQFGSARGSQFDDRRSDNRSEMEGWPARLRAEAANSHSGTRGRER 63
           A  + WF A  G   G   DDRRS +RS+M+GWP RLR EA + H GT+G +R
Sbjct: 115 ATINDWFQAYDGG--GCFTDDRRSGSRSKMKGWPTRLRVEATDDHPGTQGGKR 165

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DUZ15.2e-1362.67Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A5A7V1G13.6e-0679.49NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5D3DUE64.4e-0469.23Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0063703.11.98e-1664.29pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK27120... [more]
KAA0061993.11.37e-0879.49NBS-LRR type resistance protein [Cucumis melo var. makuwa][more]
TYK27118.18.52e-0673.53hypothetical protein E5676_scaffold478G00090 [Cucumis melo var. makuwa][more]
TYJ95737.11.96e-0450.94NBS-LRR type resistance protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 28..44
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 24..44

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0016730.1IVF0016730.1mRNA