IVF0016695 (gene) Melon (IVF77) v1

Overview
NameIVF0016695
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotran_gag_3 domain-containing protein
Locationchr05: 2622074 .. 2626405 (+)
RNA-Seq ExpressionIVF0016695
SyntenyIVF0016695
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TAAACGTTAGCTTGGTTAATTTTCGTGCACACCTAACAGTGGCCTAAACGTTAGCTTGGTTAATTTTCGTGCACACCTAACAGTGGCCTAAACGTTAGCTTGGTTAATTTTGGCGCATACCTAACAGTGGCCTAAACATTAGCTTGGTTAATTTTGGCGCACACCTAAAGATGGCCTAAACGTTAGCTAGGTTAATTTTTGCACACCACCTAACAGTGGCCTAAAAGTTAGGTTAATTTTTCACACCTAACAGTGACCTAAAAGTTAGGTTAATTTTCGCATACCTAATAGTGGCCTAAACCTTAGTTTATTTTCGTATACCTAACGGTGGCCTAAACGTTAGGATGATGCCAAACATGGGCAGAAATAGAACAAGCAGCTGCAACAGGTACGAAAATTGATGAAACTTGGGATCAATTAGTCTTGCCAATCGTCTTCAATTGGGAACTATCCTGTATGATGCATTATTGATTAGCAAAAAAAATCGACAAAAATATCACCATGTTGAAGTAAACAGCTCACAGAGACGAGGTTAAATAAAGGAGAACTGTGGACGAATAACACATCACGAAGTAACAAGGAAATGGTGATGACAAAATCTCCAATAAAATCGACAGAAATGCAAAAACCATTTGGCAGAGTAATTAACCAACATGTTATTTGCAGAATCCAAATTTTTGAAAGCAAAACGATTTCGACAAATGCGATCCAACAATCATGTTGTGATTCAGTAGAGGAAGCCAAGTAAATACTTGTAGCGTGAGTGATGGGTGTGGCTATAGTAATATATATATATTGCTTTTGATTTTTGCAGCCTGAAGATGGGAACTGAGCATGTTCATCAATTGAGCATATTGATAACTGAAGAAAATATCTGGTGAATGATTTGGGAAGAAATAGCATTAGTTCTAGCATTGTTTGCAGCAGATTTAGAACCATTATTGGATGCATTTCGAATATCTGAAGATCTCGGCTTATATATATCCAGGTGGATAACCCTGCTTCTTATAACATCGATCGATCCTACTGTATGTCCTTTAATGCCACAATGACAGCATATAGGACGCTGCTGATTGTCCAAATAGTTTTTAACTTTGTGTCGTAGGTTTCAACAGATTTGAGAAAATTGAATCCCCATCACAACCAAGTTATTGCTTTGCTTCAATTTTCATTAGAAGAAAAACCAAGAAACTAAAATTAGAGAAAATATGAATGGATGTAATTTAGTGATTTAAGAATGAATTTATGTTTGAAAGAAACAAATTAAGCACCTTCTCCAAAAACTTCTTCATGTCAGTGTCATCCTCTTCCACCTGATCTTTCTTGCATCAAATACAATATATTTATTTTTTCTTTAATTTTATTTGAACGCTTTAGTTTATTCTTTCCATATCTTGATCTCTGTTGATCCGTTATAAGCTAGACAATGAGATCTGATGGAGTGTTTAGAGATCATGGGACCTTGGACTATCCCAACTTCATGTTGATTAACACGATATTATTAAGCAGCATAGCTCCAATAATTAGCCATGCATGCATATATATACACACAAAGTTATAGCTTCAACTTAACCATTTCTCTAAATTTTCTATCACAAGTTTTTCAAACTTTAATGCTTTGTTCGAGAGAAAGTCATGATGTGAAACATCCAAGTGAAGAAGATACATTTCAAGGGAGCACGTTGATGATATATTTATCAACGCTCTTGGTAATTAATCTAAGATTGAAGAATTTAGGAATGCACTTGGTATGAGCGAAGTTTGCAAGTAATTAAATTAGTTTTAAATTCTAATTTATATCAGTGGACTAATTTAGAACAGTGCCTCCTAAGTAGATGGTAGTGGCCTAACAATGGATCAATGGGATAAATGGAAAAGAATTTTAAGGTTAGTGTGTATGAATGGTTAGTTTTGTATTTACCTATAAATATTTGTAAATGGTAAATCCAACTTGATTGAAGTACACTTGATTCTCTCCATGCCAATATTTCTTTCTTGTTTACATTTTTGTTCTTATCAGATGTAGTCATGCTGTAGTTTATTTGCTATTAATTCTTTCTGTTATTAGTGTGGTTTTATCCACACATGTAATATAGGTGTGTTCTCGTTGGCTATTTATAGCAGCCCAAATTTCTCGTCAATCAAATTTGAGCAAGTTAAAGTTACTCTTGACAATCTTAATATGGTATCAGATTAAAATCTCTCTTCCTCTTGAGAGTTATAACCCTTCGAACTTGCTTCCATGGCAGGTCCTGAAATCCTACCGAAGACCAATGATCCAAAACACCAACTCTTCCTCTTCTTCTCGGCTAATCAAACGGCGAATCCTTCAGCTGTTGAACAATATTCCAATTCATACTTTCTACACCATCCTGATAATACAAGCATCGTTCTTGTATTGAATTTTCTCACCGAGACGACGAACTACACATCTTGGAGTCAAGCCATAAAGATCGGATTAACCGGGAAGAATAATCTTGGCTTCATCAATGGGGGTTCTATTCCTAAATTGTCGTTTTGAAAATAATAGGGACAAAACTCTAACGTACGGGATAGTAGAGGAGGAGTTGGGAGGCGATAGAACAAATTATTCAGCAACAAATCAGGAAAGGGGAAGACATTTATTAGAGAATATATCTTAAAATTAAACAAAAGGGTGGCTAAACTAATACAAAATTAAGATATAGTTTGGAAGGGGATTATATAATAAATACCTTTTCTTTGTTCAAGTCTTTTACAACTGTACATATAAAACCTCTTTGCATTCAATCTTCTGAATAAAAAGCTCTCTGAGAGAAACAAGTTGCAAAGTGTGTATCACAACTACACTCCCTTTCTGAGTTTCTTTCTACCTTGCATTCATTTTCTGTCCTAAAACATTGATGATTGATTGATATCATCTCGGCATCTCCCCTTTTCCATCACCACAACTCTTTGATCTTCTTTATTCTTTCTCAGGTTCAAATCACACTAAAGACTTGTGTGTATATATTCTTTTTTGACAACTCACAGTTCCAATATAAGGAAAGAACAAAAGAAATGGTATATTCTTCTGTTTGTTACAGCCATAGTATAAAGTAAAAAGATTGTGCATAAATTACTTTCTCACAACAACCTTGAAATGTGAGTCTTCTCTTTCATTCTTTATTTGTTTTCAATGTGTGATAGTGCAAGCTTTTTCAATACAGAC

mRNA sequence

TAAACGTTAGCTTGGTTAATTTTCGTGCACACCTAACAGTGGCCTAAACGTTAGCTTGGTTAATTTTCGTGCACACCTAACAGTGGCCTAAACGTTAGCTTGGTTAATTTTGGCGCATACCTAACAGTGGCCTAAACATTAGCTTGGTTAATTTTGGCGCACACCTAAAGATGGCCTAAACGTTAGCTAGGTTAATTTTTGCACACCACCTAACAGTGGCCTAAAAGTTAGGTTAATTTTTCACACCTAACAGTGACCTAAAAGTTAGGTTAATTTTCGCATACCTAATAGTGGCCTAAACCTTAGTTTATTTTCGTATACCTAACGGTGGCCTAAACGTTAGGATGATGCCAAACATGGGCAGAAATAGAACAAGCAGCTGCAACAGGTACGAAAATTGATGAAACTTGGGATCAATTAGTCTTGCCAATCGTCTTCAATTGGGAACTATCCTGTATGATGCATTATTGATTAGCAAAAAAAATCGACAAAAATATCACCATGTTGAAGTAAACAGCTCACAGAGACGAGGTTAAATAAAGGAGAACTGTGGACGAATAACACATCACGAAGTAACAAGGAAATGGTGATGACAAAATCTCCAATAAAATCGACAGAAATGCAAAAACCATTTGGCAGAGTAATTAACCAACATGTTATTTGCAGAATCCAAATTTTTGAAAGCAAAACGATTTCGACAAATGCGATCCAACAATCATGTTGTGATTCAGTAGAGGAAGCCAAGTAAATACTTGTAGCGTGAGTGATGGGTGTGGCTATAGTAATATATATATATTGCTTTTGATTTTTGCAGCCTGAAGATGGGAACTGAGCATGTTCATCAATTGAGCATATTGATAACTGAAGAAAATATCTGGTGAATGATTTGGGAAGAAATAGCATTAGTTCTAGCATTGTTTGCAGCAGATTTAGAACCATTATTGGATGCATTTCGAATATCTGAAGATCTCGGCTTATATATATCCAGGTCCTGAAATCCTACCGAAGACCAATGATCCAAAACACCAACTCTTCCTCTTCTTCTCGGCTAATCAAACGGCGAATCCTTCAGCTGTTGAACAATATTCCAATTCATACTTTCTACACCATCCTGATAATACAAGCATCGTTCTTGTATTGAATTTTCTCACCGAGACGACGAACTACACATCTTGGAGTCAAGCCATAAAGATCGGATTAACCGGGAAGAATAATCTTGGCTTCATCAATGGGGGTTCTATTCCTAAATTGTCGTTTTGAAAATAATAGGGACAAAACTCTAACGTACGGGATAGTAGAGGAGGAGTTGGGAGGCGATAGAACAAATTATTCAGCAACAAATCAGGAAAGGGGAAGACATTTATTAGAGAATATATCTTAAAATTAAACAAAAGGGTGGCTAAACTAATACAAAATTAAGATATAGTTTGGAAGGGGATTATATAATAAATACCTTTTCTTTGTTCAAGTCTTTTACAACTGTACATATAAAACCTCTTTGCATTCAATCTTCTGAATAAAAAGCTCTCTGAGAGAAACAAGTTGCAAAGTGTGTATCACAACTACACTCCCTTTCTGAGTTTCTTTCTACCTTGCATTCATTTTCTGTCCTAAAACATTGATGATTGATTGATATCATCTCGGCATCTCCCCTTTTCCATCACCACAACTCTTTGATCTTCTTTATTCTTTCTCAGGTTCAAATCACACTAAAGACTTGTGTGTATATATTCTTTTTTGACAACTCACAGTTCCAATATAAGGAAAGAACAAAAGAAATGGTATATTCTTCTGTTTGTTACAGCCATAGTATAAAGTAAAAAGATTGTGCATAAATTACTTTCTCACAACAACCTTGAAATGTGAGTCTTCTCTTTCATTCTTTATTTGTTTTCAATGTGTGATAGTGCAAGCTTTTTCAATACAGAC

Coding sequence (CDS)

ATGCATTTCGAATATCTGAAGATCTCGGCTTATATATATCCAGGTCCTGAAATCCTACCGAAGACCAATGATCCAAAACACCAACTCTTCCTCTTCTTCTCGGCTAATCAAACGGCGAATCCTTCAGCTGTTGAACAATATTCCAATTCATACTTTCTACACCATCCTGATAATACAAGCATCGTTCTTGTATTGAATTTTCTCACCGAGACGACGAACTACACATCTTGGAGTCAAGCCATAAAGATCGGATTAACCGGGAAGAATAATCTTGGCTTCATCAATGGGGGTTCTATTCCTAAATTGTCGTTTTGA

Protein sequence

MHFEYLKISAYIYPGPEILPKTNDPKHQLFLFFSANQTANPSAVEQYSNSYFLHHPDNTSIVLVLNFLTETTNYTSWSQAIKIGLTGKNNLGFINGGSIPKLSF
Homology
[Close]
BLAST of IVF0016695 vs. ExPASy TrEMBL
Match: A0A5D3CPS4 (Retrotran_gag_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold496G00620 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 3.5e-44
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0 

Query: 15  GPEILPKTNDPKHQLFLFFSANQTANPSAVEQYSNSYFLHHPDNTSIVLVLNFLTETTNY 74
           GPEILPKTNDPKHQLFLFFSANQTANPSAVEQYSNSYFLHHPDNTSIVLVLNFLTETTNY
Sbjct: 3   GPEILPKTNDPKHQLFLFFSANQTANPSAVEQYSNSYFLHHPDNTSIVLVLNFLTETTNY 62

Query: 75  TSWSQAIKIGLTGKNNLGFINGGSIPKLSF 105
           TSWSQAIKIGLTGKNNLGFINGGSIPKLSF
Sbjct: 63  TSWSQAIKIGLTGKNNLGFINGGSIPKLSF 92

[Close]
BLAST of IVF0016695 vs. ExPASy TrEMBL
Match: A0A0A0LI19 (Retrotran_gag_3 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G151060 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.9e-13
Identity = 44/60 (73.33%), Postives = 47/60 (78.33%), Query Frame = 0 

Query: 34 SANQTANPSAVEQYSNSYFLHHPDNTSIVLVLNFLTETTNYTSWSQAIKIGLTGKNNLGF 93
          S NQT N S +EQYSN YFLHH +NTSIVLV N LTE TNY SWSQA+KI L GKN LGF
Sbjct: 13 SINQTTNFSTIEQYSNPYFLHHSNNTSIVLVSNLLTE-TNYASWSQAMKIRLIGKNKLGF 71

[Close]
BLAST of IVF0016695 vs. ExPASy TrEMBL
Match: A0A6J1DNP7 (uncharacterized protein LOC111022065 OS=Momordica charantia OX=3673 GN=LOC111022065 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 9.6e-10
Identity = 35/57 (61.40%), Postives = 45/57 (78.95%), Query Frame = 0 

Query: 40 NPSAVEQYSNSYFLHHPDNTSIVLVLNFLTETTNYTSWSQAIKIGLTGKNNLGFING 97
          NP  VEQ++N YFLHH DNTS+VLV + LT+  NYTSWS++I I LT KN +GF++G
Sbjct: 18 NPIVVEQHANPYFLHHSDNTSLVLVSDLLTD-ENYTSWSRSIVIALTVKNKIGFVDG 73

[Close]
BLAST of IVF0016695 vs. ExPASy TrEMBL
Match: A0A6J1CMF8 (uncharacterized protein LOC111012468 OS=Momordica charantia OX=3673 GN=LOC111012468 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 6.2e-09
Identity = 40/83 (48.19%), Postives = 54/83 (65.06%), Query Frame = 0 

Query: 18 ILPKTNDPKHQLFLFFSANQT----ANPSAVEQYSNSYFLHHPDNTSIVLVLNFLTETTN 77
          ILP +  P  Q+    S++ T    A  S +E YSN Y+LHH DNTS+VLV + L E  N
Sbjct: 7  ILP-SGIPSEQVHAGVSSSSTTHGVATTSILENYSNPYYLHHSDNTSLVLVSDLLNE-NN 66

Query: 78 YTSWSQAIKIGLTGKNNLGFING 97
          YTSWS+++ I LT KN +GF++G
Sbjct: 67 YTSWSRSMIIALTVKNKIGFVDG 87

[Close]
BLAST of IVF0016695 vs. ExPASy TrEMBL
Match: A0A6J1DIP8 (uncharacterized protein LOC111020399 OS=Momordica charantia OX=3673 GN=LOC111020399 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.4e-08
Identity = 33/57 (57.89%), Postives = 44/57 (77.19%), Query Frame = 0 

Query: 43  AVEQYSNSYFLHHPDNTSIVLVLNFLTETTNYTSWSQAIKIGLTGKNNLGFINGGSI 100
           A+EQY+N YFLHH DNTS+VLV + LT   NYTSWS+++ I LT KN +GF++G  +
Sbjct: 20  AIEQYTNPYFLHHSDNTSLVLVSDPLT-NENYTSWSRSMLIALTVKNKVGFVDGSIV 75

[Close]
BLAST of IVF0016695 vs. NCBI nr
Match: KAA0057292.1 (hypothetical protein E6C27_scaffold280G001330 [Cucumis melo var. makuwa] >TYK13440.1 hypothetical protein E5676_scaffold496G00620 [Cucumis melo var. makuwa])

HSP 1 Score: 187 bits (475), Expect = 1.43e-59
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0 

Query: 15  GPEILPKTNDPKHQLFLFFSANQTANPSAVEQYSNSYFLHHPDNTSIVLVLNFLTETTNY 74
           GPEILPKTNDPKHQLFLFFSANQTANPSAVEQYSNSYFLHHPDNTSIVLVLNFLTETTNY
Sbjct: 3   GPEILPKTNDPKHQLFLFFSANQTANPSAVEQYSNSYFLHHPDNTSIVLVLNFLTETTNY 62

Query: 75  TSWSQAIKIGLTGKNNLGFINGGSIPKLSF 104
           TSWSQAIKIGLTGKNNLGFINGGSIPKLSF
Sbjct: 63  TSWSQAIKIGLTGKNNLGFINGGSIPKLSF 92

[Close]
BLAST of IVF0016695 vs. NCBI nr
Match: KGN61515.1 (hypothetical protein Csa_006367 [Cucumis sativus])

HSP 1 Score: 86.7 bits (213), Expect = 1.24e-19
Identity = 44/60 (73.33%), Postives = 47/60 (78.33%), Query Frame = 0 

Query: 34 SANQTANPSAVEQYSNSYFLHHPDNTSIVLVLNFLTETTNYTSWSQAIKIGLTGKNNLGF 93
          S NQT N S +EQYSN YFLHH +NTSIVLV N LTET NY SWSQA+KI L GKN LGF
Sbjct: 13 SINQTTNFSTIEQYSNPYFLHHSNNTSIVLVSNLLTET-NYASWSQAMKIRLIGKNKLGF 71

[Close]
BLAST of IVF0016695 vs. NCBI nr
Match: XP_038902375.1 (uncharacterized protein LOC120089012 [Benincasa hispida])

HSP 1 Score: 86.3 bits (212), Expect = 9.88e-19
Identity = 46/92 (50.00%), Postives = 61/92 (66.30%), Query Frame = 0 

Query: 15  GPEILPKTNDPK-----HQLFLFFSANQTANPSAVEQYSNSYFLHHPDNTSIVLVLNFLT 74
           G + LP   +P          L F  + + NP+ +EQY+NSYFLHH D+T++V+V N LT
Sbjct: 3   GEDPLPSPRNPNIPTTSSTFDLSFPPSMSLNPTVLEQYTNSYFLHHSDSTNLVIVSNLLT 62

Query: 75  ETTNYTSWSQAIKIGLTGKNNLGFINGGSIPK 101
           ET NYTSWSQ + IGL  KN LGF++G SIP+
Sbjct: 63  ET-NYTSWSQVMVIGLIVKNKLGFVDG-SIPR 92

[Close]
BLAST of IVF0016695 vs. NCBI nr
Match: XP_038887186.1 (uncharacterized protein LOC120077373 [Benincasa hispida])

HSP 1 Score: 78.2 bits (191), Expect = 2.67e-15
Identity = 42/62 (67.74%), Postives = 48/62 (77.42%), Query Frame = 0 

Query: 42  SAVEQYSNSYFLHHPDNTSIVLVLNFLTETTNYTSWSQAIKIGLTGKNNLGFINGGSIPK 101
           S +EQY N YFLH  D+TS+VLV N LTE+ NY SWSQA+KIGLT KN LGFING  IP+
Sbjct: 25  SFLEQYQNPYFLHPSDSTSLVLVSNLLTES-NYDSWSQAMKIGLTVKNKLGFING-EIPR 84

Query: 102 LS 103
            S
Sbjct: 85  PS 84

[Close]
BLAST of IVF0016695 vs. NCBI nr
Match: XP_022154919.1 (uncharacterized protein LOC111022065 [Momordica charantia])

HSP 1 Score: 74.3 bits (181), Expect = 7.85e-13
Identity = 35/57 (61.40%), Postives = 45/57 (78.95%), Query Frame = 0 

Query: 40 NPSAVEQYSNSYFLHHPDNTSIVLVLNFLTETTNYTSWSQAIKIGLTGKNNLGFING 96
          NP  VEQ++N YFLHH DNTS+VLV + LT+  NYTSWS++I I LT KN +GF++G
Sbjct: 18 NPIVVEQHANPYFLHHSDNTSLVLVSDLLTDE-NYTSWSRSIVIALTVKNKIGFVDG 73

The following BLAST results are available for this feature:
BLAST of IVF0016695 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0016695 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CPS43.5e-44100.00Retrotran_gag_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695... [more]
A0A0A0LI191.9e-1373.33Retrotran_gag_3 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G15... [more]
A0A6J1DNP79.6e-1061.40uncharacterized protein LOC111022065 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A6J1CMF86.2e-0948.19uncharacterized protein LOC111012468 OS=Momordica charantia OX=3673 GN=LOC111012... [more]
A0A6J1DIP82.4e-0857.89uncharacterized protein LOC111020399 OS=Momordica charantia OX=3673 GN=LOC111020... [more]
BLAST of IVF0016695 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0057292.11.43e-59100.00hypothetical protein E6C27_scaffold280G001330 [Cucumis melo var. makuwa] >TYK134... [more]
KGN61515.11.24e-1973.33hypothetical protein Csa_006367 [Cucumis sativus][more]
XP_038902375.19.88e-1950.00uncharacterized protein LOC120089012 [Benincasa hispida][more]
XP_038887186.12.67e-1567.74uncharacterized protein LOC120077373 [Benincasa hispida][more]
XP_022154919.17.85e-1361.40uncharacterized protein LOC111022065 [Momordica charantia][more]
BLAST of IVF0016695 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029472Retrotransposon Copia-like, N-terminalPFAMPF14244Retrotran_gag_3coord: 54..96
e-value: 2.1E-11
score: 43.4

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0016695.2IVF0016695.2mRNA