IVF0016688 (gene) Melon (IVF77) v1

Overview
NameIVF0016688
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr05: 25740926 .. 25741150 (+)
RNA-Seq ExpressionIVF0016688
SyntenyIVF0016688
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTATCATTTCGAAGATCGTTGTTTGTTGGAACAAAAAACACTCGGAAGACGACGACAACGTTGATCATAATGATTTTAGCATTATTGATGCTAATTTGATGAACAATGAAGGAGATCACGATCATCACAATAGTATGGATGGATATAACCATCTAATGCCATGTTTTGAAGATGATGGTGATGATGAAGACCCAATTTACGATTATGCTCCGGCTGCATGA

mRNA sequence

ATGTCTATCATTTCGAAGATCGTTGTTTGTTGGAACAAAAAACACTCGGAAGACGACGACAACGTTGATCATAATGATTTTAGCATTATTGATGCTAATTTGATGAACAATGAAGGAGATCACGATCATCACAATAGTATGGATGGATATAACCATCTAATGCCATGTTTTGAAGATGATGGTGATGATGAAGACCCAATTTACGATTATGCTCCGGCTGCATGA

Coding sequence (CDS)

ATGTCTATCATTTCGAAGATCGTTGTTTGTTGGAACAAAAAACACTCGGAAGACGACGACAACGTTGATCATAATGATTTTAGCATTATTGATGCTAATTTGATGAACAATGAAGGAGATCACGATCATCACAATAGTATGGATGGATATAACCATCTAATGCCATGTTTTGAAGATGATGGTGATGATGAAGACCCAATTTACGATTATGCTCCGGCTGCATGA

Protein sequence

MSIISKIVVCWNKKHSEDDDNVDHNDFSIIDANLMNNEGDHDHHNSMDGYNHLMPCFEDDGDDEDPIYDYAPAA
Homology
BLAST of IVF0016688 vs. NCBI nr
Match: MBA0622207.1 (hypothetical protein [Gossypium davidsonii] >MBA0657693.1 hypothetical protein [Gossypium klotzschianum])

HSP 1 Score: 52.4 bits (124), Expect = 1.30e-06
Identity = 34/75 (45.33%), Postives = 41/75 (54.67%), Query Frame = 0

Query: 1  MSIISKIVVCWNKKHSEDDDNVDHNDFSIIDANLMNNEGDHDHHNSMDGYNHLMPCFEDD 60
          MS +SK+V  W KKH++ DD  D NDF    A  M   GD D     DG   + P    +
Sbjct: 29 MSPLSKVVASWCKKHADGDD--DDNDFDYAPAACMEGNGDDD-----DGDYDVAPAASRE 88

Query: 61 GDDEDP-IYDYAPAA 74
          GDD+D   YDYAPAA
Sbjct: 89 GDDDDDGSYDYAPAA 96

BLAST of IVF0016688 vs. NCBI nr
Match: MBA0575172.1 (hypothetical protein [Gossypium lobatum] >MBA0690270.1 hypothetical protein [Gossypium aridum] >TYI79433.1 hypothetical protein E1A91_D05G021900v1 [Gossypium mustelinum])

HSP 1 Score: 51.6 bits (122), Expect = 1.37e-06
Identity = 34/75 (45.33%), Postives = 41/75 (54.67%), Query Frame = 0

Query: 1  MSIISKIVVCWNKKHSEDDDNVDHNDFSIIDANLMNNEGDHDHHNSMDGYNHLMPCFEDD 60
          MS +SK+V  W KKH++ DD  D NDF    A  M   GD D     DG   + P    +
Sbjct: 1  MSPLSKVVASWCKKHADGDD--DDNDFDYAPAACMEGNGDDD-----DGDYDVAPAASLE 60

Query: 61 GDDEDP-IYDYAPAA 74
          GDD+D   YDYAPAA
Sbjct: 61 GDDDDDGSYDYAPAA 68

BLAST of IVF0016688 vs. NCBI nr
Match: MBA0744760.1 (hypothetical protein [Gossypium gossypioides] >MBA0865730.1 hypothetical protein [Gossypium schwendimanii])

HSP 1 Score: 51.6 bits (122), Expect = 2.59e-06
Identity = 34/75 (45.33%), Postives = 41/75 (54.67%), Query Frame = 0

Query: 1  MSIISKIVVCWNKKHSEDDDNVDHNDFSIIDANLMNNEGDHDHHNSMDGYNHLMPCFEDD 60
          MS +SK+V  W KKH++ DD  D NDF    A  M   GD D     DG   + P    +
Sbjct: 29 MSPLSKVVASWCKKHADGDD--DDNDFDYAPAACMEGNGDDD-----DGDYDVAPAASLE 88

Query: 61 GDDEDP-IYDYAPAA 74
          GDD+D   YDYAPAA
Sbjct: 89 GDDDDDGSYDYAPAA 96

BLAST of IVF0016688 vs. NCBI nr
Match: MBA0564450.1 (hypothetical protein [Gossypium lobatum])

HSP 1 Score: 50.8 bits (120), Expect = 2.75e-06
Identity = 34/75 (45.33%), Postives = 40/75 (53.33%), Query Frame = 0

Query: 1  MSIISKIVVCWNKKHSEDDDNVDHNDFSIIDANLMNNEGDHDHHNSMDGYNHLMPCFEDD 60
          MS +SK+V  W KKH + DD  D NDF    A  M  +GD D     DG     P    +
Sbjct: 1  MSALSKVVASWCKKHVDGDD--DDNDFDYAPAACMEGDGDDD-----DGDYDYAPAASLE 60

Query: 61 GDDEDP-IYDYAPAA 74
          GDD+D   YDYAPAA
Sbjct: 61 GDDDDNGSYDYAPAA 68

BLAST of IVF0016688 vs. NCBI nr
Match: MBA0744761.1 (hypothetical protein [Gossypium gossypioides])

HSP 1 Score: 51.2 bits (121), Expect = 3.67e-06
Identity = 34/75 (45.33%), Postives = 40/75 (53.33%), Query Frame = 0

Query: 1  MSIISKIVVCWNKKHSEDDDNVDHNDFSIIDANLMNNEGDHDHHNSMDGYNHLMPCFEDD 60
          MS +SK+V  W KKH + DD  D NDF    A  M  +GD D     DG     P    +
Sbjct: 29 MSALSKVVASWCKKHVDGDD--DDNDFDYAPAACMEGDGDDD-----DGDYDYAPAASLE 88

Query: 61 GDDEDP-IYDYAPAA 74
          GDD+D   YDYAPAA
Sbjct: 89 GDDDDDGSYDYAPAA 96

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
MBA0622207.11.30e-0645.33hypothetical protein [Gossypium davidsonii] >MBA0657693.1 hypothetical protein [... [more]
MBA0575172.11.37e-0645.33hypothetical protein [Gossypium lobatum] >MBA0690270.1 hypothetical protein [Gos... [more]
MBA0744760.12.59e-0645.33hypothetical protein [Gossypium gossypioides] >MBA0865730.1 hypothetical protein... [more]
MBA0564450.12.75e-0645.33hypothetical protein [Gossypium lobatum][more]
MBA0744761.13.67e-0645.33hypothetical protein [Gossypium gossypioides][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0016688.1IVF0016688.1mRNA