IVF0016688 (gene) Melon (IVF77) v1

Overview


Name	IVF0016688
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr05: 25740926 .. 25741150 (+)
RNA-Seq Expression	IVF0016688
Synteny	IVF0016688

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTATCATTTCGAAGATCGTTGTTTGTTGGAACAAAAAACACTCGGAAGACGACGACAACGTTGATCATAATGATTTTAGCATTATTGATGCTAATTTGATGAACAATGAAGGAGATCACGATCATCACAATAGTATGGATGGATATAACCATCTAATGCCATGTTTTGAAGATGATGGTGATGATGAAGACCCAATTTACGATTATGCTCCGGCTGCATGA

mRNA sequence

ATGTCTATCATTTCGAAGATCGTTGTTTGTTGGAACAAAAAACACTCGGAAGACGACGACAACGTTGATCATAATGATTTTAGCATTATTGATGCTAATTTGATGAACAATGAAGGAGATCACGATCATCACAATAGTATGGATGGATATAACCATCTAATGCCATGTTTTGAAGATGATGGTGATGATGAAGACCCAATTTACGATTATGCTCCGGCTGCATGA

Coding sequence (CDS)

ATGTCTATCATTTCGAAGATCGTTGTTTGTTGGAACAAAAAACACTCGGAAGACGACGACAACGTTGATCATAATGATTTTAGCATTATTGATGCTAATTTGATGAACAATGAAGGAGATCACGATCATCACAATAGTATGGATGGATATAACCATCTAATGCCATGTTTTGAAGATGATGGTGATGATGAAGACCCAATTTACGATTATGCTCCGGCTGCATGA

Protein sequence

MSIISKIVVCWNKKHSEDDDNVDHNDFSIIDANLMNNEGDHDHHNSMDGYNHLMPCFEDDGDDEDPIYDYAPAA

Homology

[Close]

BLAST of IVF0016688 vs. NCBI nr
Match: MBA0622207.1 (hypothetical protein [Gossypium davidsonii] >MBA0657693.1 hypothetical protein [Gossypium klotzschianum])

HSP 1 Score: 52.4 bits (124), Expect = 1.30e-06
Identity = 34/75 (45.33%), Postives = 41/75 (54.67%), Query Frame = 0


Query: 1  MSIISKIVVCWNKKHSEDDDNVDHNDFSIIDANLMNNEGDHDHHNSMDGYNHLMPCFEDD 60
          MS +SK+V  W KKH++ DD  D NDF    A  M   GD D     DG   + P    +
Sbjct: 29 MSPLSKVVASWCKKHADGDD--DDNDFDYAPAACMEGNGDDD-----DGDYDVAPAASRE 88

Query: 61 GDDEDP-IYDYAPAA 74
          GDD+D   YDYAPAA
Sbjct: 89 GDDDDDGSYDYAPAA 96

[Close]

BLAST of IVF0016688 vs. NCBI nr
Match: MBA0575172.1 (hypothetical protein [Gossypium lobatum] >MBA0690270.1 hypothetical protein [Gossypium aridum] >TYI79433.1 hypothetical protein E1A91_D05G021900v1 [Gossypium mustelinum])

HSP 1 Score: 51.6 bits (122), Expect = 1.37e-06
Identity = 34/75 (45.33%), Postives = 41/75 (54.67%), Query Frame = 0


Query: 1  MSIISKIVVCWNKKHSEDDDNVDHNDFSIIDANLMNNEGDHDHHNSMDGYNHLMPCFEDD 60
          MS +SK+V  W KKH++ DD  D NDF    A  M   GD D     DG   + P    +
Sbjct: 1  MSPLSKVVASWCKKHADGDD--DDNDFDYAPAACMEGNGDDD-----DGDYDVAPAASLE 60

Query: 61 GDDEDP-IYDYAPAA 74
          GDD+D   YDYAPAA
Sbjct: 61 GDDDDDGSYDYAPAA 68

[Close]

BLAST of IVF0016688 vs. NCBI nr
Match: MBA0744760.1 (hypothetical protein [Gossypium gossypioides] >MBA0865730.1 hypothetical protein [Gossypium schwendimanii])

HSP 1 Score: 51.6 bits (122), Expect = 2.59e-06
Identity = 34/75 (45.33%), Postives = 41/75 (54.67%), Query Frame = 0


Query: 1  MSIISKIVVCWNKKHSEDDDNVDHNDFSIIDANLMNNEGDHDHHNSMDGYNHLMPCFEDD 60
          MS +SK+V  W KKH++ DD  D NDF    A  M   GD D     DG   + P    +
Sbjct: 29 MSPLSKVVASWCKKHADGDD--DDNDFDYAPAACMEGNGDDD-----DGDYDVAPAASLE 88

Query: 61 GDDEDP-IYDYAPAA 74
          GDD+D   YDYAPAA
Sbjct: 89 GDDDDDGSYDYAPAA 96

[Close]

BLAST of IVF0016688 vs. NCBI nr
Match: MBA0564450.1 (hypothetical protein [Gossypium lobatum])

HSP 1 Score: 50.8 bits (120), Expect = 2.75e-06
Identity = 34/75 (45.33%), Postives = 40/75 (53.33%), Query Frame = 0


Query: 1  MSIISKIVVCWNKKHSEDDDNVDHNDFSIIDANLMNNEGDHDHHNSMDGYNHLMPCFEDD 60
          MS +SK+V  W KKH + DD  D NDF    A  M  +GD D     DG     P    +
Sbjct: 1  MSALSKVVASWCKKHVDGDD--DDNDFDYAPAACMEGDGDDD-----DGDYDYAPAASLE 60

Query: 61 GDDEDP-IYDYAPAA 74
          GDD+D   YDYAPAA
Sbjct: 61 GDDDDNGSYDYAPAA 68

[Close]

BLAST of IVF0016688 vs. NCBI nr
Match: MBA0744761.1 (hypothetical protein [Gossypium gossypioides])

HSP 1 Score: 51.2 bits (121), Expect = 3.67e-06
Identity = 34/75 (45.33%), Postives = 40/75 (53.33%), Query Frame = 0


Query: 1  MSIISKIVVCWNKKHSEDDDNVDHNDFSIIDANLMNNEGDHDHHNSMDGYNHLMPCFEDD 60
          MS +SK+V  W KKH + DD  D NDF    A  M  +GD D     DG     P    +
Sbjct: 29 MSALSKVVASWCKKHVDGDD--DDNDFDYAPAACMEGDGDDD-----DGDYDYAPAASLE 88

Query: 61 GDDEDP-IYDYAPAA 74
          GDD+D   YDYAPAA
Sbjct: 89 GDDDDDGSYDYAPAA 96

The following BLAST results are available for this feature:

BLAST of IVF0016688 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0016688 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0016688 vs. NCBI nr


Match Name	E-value	Identity	Description
MBA0622207.1	1.30e-06	45.33	hypothetical protein [Gossypium davidsonii] >MBA0657693.1 hypothetical protein [...	[more]
MBA0575172.1	1.37e-06	45.33	hypothetical protein [Gossypium lobatum] >MBA0690270.1 hypothetical protein [Gos...	[more]
MBA0744760.1	2.59e-06	45.33	hypothetical protein [Gossypium gossypioides] >MBA0865730.1 hypothetical protein...	[more]
MBA0564450.1	2.75e-06	45.33	hypothetical protein [Gossypium lobatum]	[more]
MBA0744761.1	3.67e-06	45.33	hypothetical protein [Gossypium gossypioides]	[more]

BLAST of IVF0016688 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0016688.1	IVF0016688.1	mRNA