IVF0016621 (gene) Melon (IVF77) v1

Overview
NameIVF0016621
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr04: 14699894 .. 14700646 (+)
RNA-Seq ExpressionIVF0016621
SyntenyIVF0016621
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCAATGGCAGCTCCGATAATGAAGCACAGGTGTTAGCCTACGAGCCGAGCTCTCACAAGCTTCCCGAAGATCACCACATGAATCACTTCCCCCTTCTTCCTCCTCACCCATTTGCTTCTTCTTTTACCACTCAACCCAAACCATTACTCAAATTCCTCAAACTCCATTATTGCATTACATGCCACCTATCGCCTTTCCTCATTTTCCAATGCTGGAACCACTTCCTCCTCTTCGATTCGATCCCTCATCGTCCTTCCTCAATCCGCTTTTGCTTCATTCGGCTGCATTTTAGTCGCTTTCTCTGCCTTCTCGCTTTATTTTTCTGCGGTTTTCAAAGGTAACCTTACTCCTCACCTCTTTATGATTTCATCTCTGGATCATTCGTATTTGATTGCTCATGTCTTCCGATTTTTGTTTAATTGTGTTGGATACATTTTCTGTGTTTTAGGTGATTTTTTTTTTGTTGAAATGGTCAATTGTCTTTGTATTGATCGGATTTATCTGTATTGAAGTATTTGAAAATATTGATAGATCCTCTAAATTCATGAGGTTTTTGTCGTCTCTGATGATTGTTACTCTCCATTTGGAAATATACGATCCTTTGGGCGCTTAAGATTGACATGATAGCATGACATCCTGATGAAACTCAGGATCTCTTATCGGTTTTTCTGTTGCTGTTTTAGTCTCCAGGGCTTACTAGTTACCAAGTTCGTAATAGGCAGTTGTTCTACATCTGGTTTCGAGTTTGA

mRNA sequence

ATGATCAATGGCAGCTCCGATAATGAAGCACAGGTGTTAGCCTACGAGCCGAGCTCTCACAAGCTTCCCGAAGATCACCACATGAATCACTTCCCCCTTCTTCCTCCTCACCCATTTGCTTCTTCTTTTACCACTCAACCCAAACCATTACTCAAATTCCTCAAACTCCATTATTGCATTACATGCCACCTATCGCCTTTCCTCATTTTCCAATGCTGGAACCACTTCCTCCTCTTCGATTCGATCCCTCATCGTCCTTCCTCAATCCGCTTTTGCTTCATTCGGCTGCATTTTAGTCGCTTTCTCTGCCTTCTCGCTTTATTTTTCTGCGGTTTTCAAAGATCCTCTAAATTCATGAGGTTTTTGTCGTCTCTGATGATTTCTCCAGGGCTTACTAGTTACCAAGTTCGTAATAGGCAGTTGTTCTACATCTGGTTTCGAGTTTGA

Coding sequence (CDS)

ATGATCAATGGCAGCTCCGATAATGAAGCACAGGTGTTAGCCTACGAGCCGAGCTCTCACAAGCTTCCCGAAGATCACCACATGAATCACTTCCCCCTTCTTCCTCCTCACCCATTTGCTTCTTCTTTTACCACTCAACCCAAACCATTACTCAAATTCCTCAAACTCCATTATTGCATTACATGCCACCTATCGCCTTTCCTCATTTTCCAATGCTGGAACCACTTCCTCCTCTTCGATTCGATCCCTCATCGTCCTTCCTCAATCCGCTTTTGCTTCATTCGGCTGCATTTTAGTCGCTTTCTCTGCCTTCTCGCTTTATTTTTCTGCGGTTTTCAAAGATCCTCTAAATTCATGAGGTTTTTGTCGTCTCTGATGATTTCTCCAGGGCTTACTAGTTACCAAGTTCGTAATAGGCAGTTGTTCTACATCTGGTTTCGAGTTTGA

Protein sequence

MINGSSDNEAQVLAYEPSSHKLPEDHHMNHFPLLPPHPFASSFTTQPKPLLKFLKLHYCITCHLSPFLIFQCWNHFLLFDSIPHRPSSIRFCFIRLHFSRFLCLLALFFCGFQRSSKFMRFLSSLMISPGLTSYQVRNRQLFYIWFRV
Homology
[Close]
BLAST of IVF0016621 vs. ExPASy TrEMBL
Match: A0A5D3CBE6 (Putative plastidic glucose transporter 3 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold323G00960 PE=3 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 7.6e-61
Identity = 115/124 (92.74%), Postives = 117/124 (94.35%), Query Frame = 0 

Query: 1   MINGSSDNEAQVLAYEPSSHKLPEDHHMNHFPLLPPHPFASSFTTQPKPLLKFLKLHYCI 60
           MINGSSDNEAQVLAYEPSSHKLPEDHHMNHFPLLPPHPFASSFTTQPKPLLKFLKLHYCI
Sbjct: 1   MINGSSDNEAQVLAYEPSSHKLPEDHHMNHFPLLPPHPFASSFTTQPKPLLKFLKLHYCI 60

Query: 61  TCHLSPFLIFQCWNHFLLFDSIPHRPSSIRFCFIRLHFSRFLCLLALFFCGFQRSSKFMR 120
           TCHLSPFLIFQCWNHFLLFDSIPHRPSSIRFCFIRLHFSRFLCLLALFFCGFQR    + 
Sbjct: 61  TCHLSPFLIFQCWNHFLLFDSIPHRPSSIRFCFIRLHFSRFLCLLALFFCGFQRGRHVVE 120

Query: 121 FLSS 125
             S+
Sbjct: 121 ISST 124

[Close]
BLAST of IVF0016621 vs. ExPASy TrEMBL
Match: A0A0A0L8G0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G485840 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 5.9e-53
Identity = 114/146 (78.08%), Postives = 115/146 (78.77%), Query Frame = 0 

Query: 1   MINGSSDNEAQVLAYEPSSHKLPEDHHMNHFPLLPPHPFASSFTTQPKPLLKFLKLHYCI 60
           MINGSSD EAQVLAYE SSHKLPEDHHMNH P LPPHPFASSFTTQ KPLLK     +CI
Sbjct: 1   MINGSSDKEAQVLAYETSSHKLPEDHHMNHSPFLPPHPFASSFTTQSKPLLKL----HCI 60

Query: 61  TCHLSPFLIFQCWNHFLLFDSIPHRPSSIRFCFIRLHFSRFLCLLALFFCGFQRSSKFMR 120
           TCH SPF IFQC NH LLF SIPH PSSI FCFIRL FS  LCLLALFFC FQRSSKFM 
Sbjct: 61  TCHPSPFPIFQCRNHSLLFHSIPHPPSSIPFCFIRLPFSHSLCLLALFFCDFQRSSKFMS 120

Query: 121 FLSSLMISPGLTSYQVRNRQLFYIWF 147
           F      SPGLTSY   NRQLFYIWF
Sbjct: 121 F-----FSPGLTSYPFPNRQLFYIWF 137

[Close]
BLAST of IVF0016621 vs. NCBI nr
Match: KAA0050792.1 (putative plastidic glucose transporter 3 isoform X1 [Cucumis melo var. makuwa] >TYK08554.1 putative plastidic glucose transporter 3 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 243 bits (621), Expect = 3.27e-75
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0 

Query: 1   MINGSSDNEAQVLAYEPSSHKLPEDHHMNHFPLLPPHPFASSFTTQPKPLLKFLKLHYCI 60
           MINGSSDNEAQVLAYEPSSHKLPEDHHMNHFPLLPPHPFASSFTTQPKPLLKFLKLHYCI
Sbjct: 1   MINGSSDNEAQVLAYEPSSHKLPEDHHMNHFPLLPPHPFASSFTTQPKPLLKFLKLHYCI 60

Query: 61  TCHLSPFLIFQCWNHFLLFDSIPHRPSSIRFCFIRLHFSRFLCLLALFFCGFQR 114
           TCHLSPFLIFQCWNHFLLFDSIPHRPSSIRFCFIRLHFSRFLCLLALFFCGFQR
Sbjct: 61  TCHLSPFLIFQCWNHFLLFDSIPHRPSSIRFCFIRLHFSRFLCLLALFFCGFQR 114

[Close]
BLAST of IVF0016621 vs. NCBI nr
Match: KGN58141.2 (hypothetical protein Csa_023397 [Cucumis sativus])

HSP 1 Score: 62.8 bits (151), Expect = 3.58e-08
Identity = 29/32 (90.62%), Postives = 29/32 (90.62%), Query Frame = 0 

Query: 1  MINGSSDNEAQVLAYEPSSHKLPEDHHMNHFP 32
          MINGSSD EAQVLAYE SSHKLPEDHHMNH P
Sbjct: 1  MINGSSDKEAQVLAYETSSHKLPEDHHMNHSP 32

[Close]
BLAST of IVF0016621 vs. NCBI nr
Match: KAE8650725.1 (hypothetical protein Csa_009451 [Cucumis sativus])

HSP 1 Score: 62.8 bits (151), Expect = 3.61e-08
Identity = 29/32 (90.62%), Postives = 29/32 (90.62%), Query Frame = 0 

Query: 1  MINGSSDNEAQVLAYEPSSHKLPEDHHMNHFP 32
          MINGSSD EAQVLAYE SSHKLPEDHHMNH P
Sbjct: 1  MINGSSDKEAQVLAYETSSHKLPEDHHMNHSP 32

The following BLAST results are available for this feature:
BLAST of IVF0016621 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0016621 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CBE67.6e-6192.74Putative plastidic glucose transporter 3 isoform X1 OS=Cucumis melo var. makuwa ... [more]
A0A0A0L8G05.9e-5378.08Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G485840 PE=4 SV=1[more]
BLAST of IVF0016621 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0050792.13.27e-75100.00putative plastidic glucose transporter 3 isoform X1 [Cucumis melo var. makuwa] >... [more]
KGN58141.23.58e-0890.63hypothetical protein Csa_023397 [Cucumis sativus][more]
KAE8650725.13.61e-0890.63hypothetical protein Csa_009451 [Cucumis sativus][more]
BLAST of IVF0016621 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0016621.1IVF0016621.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008643 carbohydrate transport
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0022857 transmembrane transporter activity