IVF0016580 (gene) Melon (IVF77) v1

Overview


Name	IVF0016580
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Beta-galactosidase
Location	tig00195367: 749794 .. 750223 (+)
RNA-Seq Expression	IVF0016580
Synteny	IVF0016580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTTGTGCAGGGAGACAGTTTGGGTCACGTCGAATGACGGTATACTATATGCTAAGCTTGAGGAAGCTGACCGTACTTATGATTTCCTTGGAGGACTTAATCCCAAATTTGATATTGTATGTGGTCATATACTTGGACAGAGACCACTTCCATCCTTAATGGAAGTGTGTTATGAAGTCCGTCTTGAAGAAGACCGTACGAATGCCATGAGTATACTAACTACCCCTGCCATTGACTCCACTGCCTTCAATGGTCGATCCTCGACCCATGATAGTGAGAAGAATAGCTAGAAACCAATCCTTGTATGTGAGCACTGCAAAAAACAGTGGCACACCAAGGATCAATGTTGGAAACTCCACGATCATCCCCCAGGAGGTAAGAAACATTCTTCCAACAAGAAACAGAACTCAAGGTGTGCCTATGTAA

mRNA sequence

ATGGATTTGTGCAGGGAGACAGTTTGGGTCACGTCGAATGACGGTATACTATATGCTAAGCTTGAGGAAGCTGACCGTACTTATGATTTCCTTGGAGGACTTAATCCCAAATTTGATATTGTATGTGGTCATATACTTGGACAGAGACCACTTCCATCCTTAATGGAAGTGTGTTATGAAGTCCGTCTTGAAGAAGACCGTACGAATGCCATGAGTATACTAACTACCCCTGCCATTGACTCCACTGCCTTCAATGCTAGAAACCAATCCTTGTATGTGAGCACTGCAAAAAACAGTGGCACACCAAGGATCAATGTTGGAAACTCCACGATCATCCCCCAGGAGGTAAGAAACATTCTTCCAACAAGAAACAGAACTCAAGGTGTGCCTATGTAA

Coding sequence (CDS)

ATGGATTTGTGCAGGGAGACAGTTTGGGTCACGTCGAATGACGGTATACTATATGCTAAGCTTGAGGAAGCTGACCGTACTTATGATTTCCTTGGAGGACTTAATCCCAAATTTGATATTGTATGTGGTCATATACTTGGACAGAGACCACTTCCATCCTTAATGGAAGTGTGTTATGAAGTCCGTCTTGAAGAAGACCGTACGAATGCCATGAGTATACTAACTACCCCTGCCATTGACTCCACTGCCTTCAATGCTAGAAACCAATCCTTGTATGTGAGCACTGCAAAAAACAGTGGCACACCAAGGATCAATGTTGGAAACTCCACGATCATCCCCCAGGAGGTAAGAAACATTCTTCCAACAAGAAACAGAACTCAAGGTGTGCCTATGTAA

Protein sequence

MDLCRETVWVTSNDGILYAKLEEADRTYDFLGGLNPKFDIVCGHILGQRPLPSLMEVCYEVRLEEDRTNAMSILTTPAIDSTAFNARNQSLYVSTAKNSGTPRINVGNSTIIPQEVRNILPTRNRTQGVPM

Homology

[Close]

BLAST of IVF0016580 vs. ExPASy TrEMBL
Match: A0A5D3DBU1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold291G00060 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 8.3e-43
Identity = 86/90 (95.56%), Postives = 88/90 (97.78%), Query Frame = 0


Query: 1  MDLCRETVWVTSNDGILYAKLEEADRTYDFLGGLNPKFDIVCGHILGQRPLPSLMEVCYE 60
          MDLCRETVWVTSNDGILYAKLEEADRTYDFLGGLNPKFDIVCGHILGQRPLPSLMEVCYE
Sbjct: 1  MDLCRETVWVTSNDGILYAKLEEADRTYDFLGGLNPKFDIVCGHILGQRPLPSLMEVCYE 60

Query: 61 VRLEEDRTNAMSILTTPAIDSTAFNARNQS 91
          VRLEEDRTNAMSILTTPAIDSTAFN R+ +
Sbjct: 61 VRLEEDRTNAMSILTTPAIDSTAFNGRSST 90

[Close]

BLAST of IVF0016580 vs. ExPASy TrEMBL
Match: A0A5A7UVH3 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G004960 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 8.3e-43
Identity = 91/130 (70.00%), Postives = 100/130 (76.92%), Query Frame = 0


Query: 1   MDLCRETVWVTSNDGILYAKLEEADRTYDFLGGLNPKFDIVCGHILGQRPLPSLMEVCYE 60
           MDLCRETVW T NDG  YAKLEEAD  YDFL GLNPKFD VCG+ILGQRPLPSLMEVC+E
Sbjct: 1   MDLCRETVWDTPNDGTQYAKLEEADHVYDFLAGLNPKFDTVCGYILGQRPLPSLMEVCFE 60

Query: 61  VRLEEDRTNAMSILTTPAIDSTAFNARNQSLYVSTAKNSGTPRINVGNSTIIPQEVRNIL 120
           VRLEEDRTNAM +LT P IDS AF+A              TPRI+VG+ST++PQEVRN  
Sbjct: 61  VRLEEDRTNAMGVLTIPTIDSAAFSA-------------CTPRISVGHSTVVPQEVRNSP 117

Query: 121 PTRNRTQGVP 131
            TRN+TQ VP
Sbjct: 121 STRNKTQDVP 117

[Close]

BLAST of IVF0016580 vs. ExPASy TrEMBL
Match: A0A5A7VJZ8 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold37G00270 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 1.1e-42
Identity = 95/141 (67.38%), Postives = 104/141 (73.76%), Query Frame = 0


Query: 1   MDLCRETVWVTSNDGILYAKLEEADRTYDFLGGLNPKFDIVCGHILGQRPLPSLMEVCYE 60
           MDLCRETVW T ND   YAKLEEADR YDFL GLNPKFD VCG ILGQR LPSLMEVC+E
Sbjct: 109 MDLCRETVWGTPNDSTQYAKLEEADRVYDFLAGLNPKFDNVCGRILGQRALPSLMEVCFE 168

Query: 61  VRLEEDRTNAMSILTT-----------PAIDSTAFNARNQSLYVSTAKNSGTPRINVGNS 120
           VRLEEDRTNAM +LTT           P I        +Q L VSTA+N+GTPRI+VGNS
Sbjct: 169 VRLEEDRTNAMGVLTTLPLTPLPLALGPQIMIVTRIMGSQFLCVSTARNNGTPRISVGNS 228

Query: 121 TIIPQEVRNILPTRNRTQGVP 131
           T++PQEVRN  P RNRTQ +P
Sbjct: 229 TVVPQEVRNNPPMRNRTQDMP 249

[Close]

BLAST of IVF0016580 vs. ExPASy TrEMBL
Match: A0A5A7T6N2 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold121G00400 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 3.5e-41
Identity = 88/127 (69.29%), Postives = 99/127 (77.95%), Query Frame = 0


Query: 1   MDLCRETVWVTSNDGILYAKLEEADRTYDFLGGLNPKFDIVCGHILGQRPLPSLMEVCYE 60
           MDLCRETVW TSND   YAKLEE DR YDFL GLN KFD VCG ILGQRPLPSLMEVC+E
Sbjct: 109 MDLCRETVWDTSNDSTQYAKLEEVDRVYDFLAGLNHKFDNVCGRILGQRPLPSLMEVCFE 168

Query: 61  VRLEEDRTNAMSILTTPAIDSTAFN----------ARNQSLYVSTAKNSGTPRINVGNST 118
           VRLEEDRTNAM +LTTP IDS AF+            +Q L VSTA+N+GTPRI+VGN T
Sbjct: 169 VRLEEDRTNAMGVLTTPTIDSAAFSDPQIMTVTRIMGSQFLCVSTARNNGTPRISVGNFT 228

[Close]

BLAST of IVF0016580 vs. ExPASy TrEMBL
Match: A0A5D3DU34 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold322G00330 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 3.5e-41
Identity = 88/127 (69.29%), Postives = 99/127 (77.95%), Query Frame = 0


Query: 1   MDLCRETVWVTSNDGILYAKLEEADRTYDFLGGLNPKFDIVCGHILGQRPLPSLMEVCYE 60
           MDLCRETVW TSND   YAKLEE DR YDFL GLN KFD VCG ILGQRPLPSLMEVC+E
Sbjct: 109 MDLCRETVWDTSNDSTQYAKLEEVDRVYDFLAGLNHKFDNVCGRILGQRPLPSLMEVCFE 168

Query: 61  VRLEEDRTNAMSILTTPAIDSTAFN----------ARNQSLYVSTAKNSGTPRINVGNST 118
           VRLEEDRTNAM +LTTP IDS AF+            +Q L VSTA+N+GTPRI+VGN T
Sbjct: 169 VRLEEDRTNAMGVLTTPTIDSAAFSDPQIMTVTRIMGSQFLCVSTARNNGTPRISVGNFT 228

[Close]

BLAST of IVF0016580 vs. NCBI nr
Match: KAA0048797.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYK20749.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 180 bits (456), Expect = 3.72e-53
Identity = 86/87 (98.85%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 1  MDLCRETVWVTSNDGILYAKLEEADRTYDFLGGLNPKFDIVCGHILGQRPLPSLMEVCYE 60
          MDLCRETVWVTSNDGILYAKLEEADRTYDFLGGLNPKFDIVCGHILGQRPLPSLMEVCYE
Sbjct: 1  MDLCRETVWVTSNDGILYAKLEEADRTYDFLGGLNPKFDIVCGHILGQRPLPSLMEVCYE 60

Query: 61 VRLEEDRTNAMSILTTPAIDSTAFNAR 87
          VRLEEDRTNAMSILTTPAIDSTAFN R
Sbjct: 61 VRLEEDRTNAMSILTTPAIDSTAFNGR 87

[Close]

BLAST of IVF0016580 vs. NCBI nr
Match: KAA0041425.1 (Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 172 bits (436), Expect = 4.42e-51
Identity = 91/140 (65.00%), Postives = 101/140 (72.14%), Query Frame = 0


Query: 1   MDLCRETVWVTSNDGILYAKLEEADRTYDFLGGLNPKFDIVCGHILGQRPLPSLMEVCYE 60
           MDLCRE+VW T ND   YAKLEE DR YDFL  LNPKFD VCG ILGQRPLPSLMEVC+E
Sbjct: 1   MDLCRESVWDTPNDDTQYAKLEEVDRVYDFLARLNPKFDTVCGRILGQRPLPSLMEVCFE 60

Query: 61  VRLEEDRTNAMSILTT-----------PAIDSTAFNARNQSLYVSTAKNSGTPRINVGNS 120
           VRLEEDRTNAM +L             P I +      +Q L VSTA+N+GTPRI+VGNS
Sbjct: 61  VRLEEDRTNAMGVLLPLPLTPLPLALGPQIMTVTRIMGSQFLRVSTARNNGTPRISVGNS 120

Query: 121 TIIPQEVRNILPTRNRTQGV 129
           T++PQEV N  PTRNRTQ V
Sbjct: 121 TVVPQEVTNGPPTRNRTQDV 140

[Close]

BLAST of IVF0016580 vs. NCBI nr
Match: KAA0058176.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 181 bits (459), Expect = 4.00e-50
Identity = 91/130 (70.00%), Postives = 100/130 (76.92%), Query Frame = 0


Query: 1   MDLCRETVWVTSNDGILYAKLEEADRTYDFLGGLNPKFDIVCGHILGQRPLPSLMEVCYE 60
           MDLCRETVW T NDG  YAKLEEAD  YDFL GLNPKFD VCG+ILGQRPLPSLMEVC+E
Sbjct: 1   MDLCRETVWDTPNDGTQYAKLEEADHVYDFLAGLNPKFDTVCGYILGQRPLPSLMEVCFE 60

Query: 61  VRLEEDRTNAMSILTTPAIDSTAFNARNQSLYVSTAKNSGTPRINVGNSTIIPQEVRNIL 120
           VRLEEDRTNAM +LT P IDS AF+A              TPRI+VG+ST++PQEVRN  
Sbjct: 61  VRLEEDRTNAMGVLTIPTIDSAAFSAC-------------TPRISVGHSTVVPQEVRNSP 117

Query: 121 PTRNRTQGVP 130
            TRN+TQ VP
Sbjct: 121 STRNKTQDVP 117

[Close]

BLAST of IVF0016580 vs. NCBI nr
Match: KAA0065739.1 (Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 180 bits (457), Expect = 1.27e-49
Identity = 95/141 (67.38%), Postives = 104/141 (73.76%), Query Frame = 0


Query: 1   MDLCRETVWVTSNDGILYAKLEEADRTYDFLGGLNPKFDIVCGHILGQRPLPSLMEVCYE 60
           MDLCRETVW T ND   YAKLEEADR YDFL GLNPKFD VCG ILGQR LPSLMEVC+E
Sbjct: 109 MDLCRETVWGTPNDSTQYAKLEEADRVYDFLAGLNPKFDNVCGRILGQRALPSLMEVCFE 168

Query: 61  VRLEEDRTNAMSILTT-----------PAIDSTAFNARNQSLYVSTAKNSGTPRINVGNS 120
           VRLEEDRTNAM +LTT           P I        +Q L VSTA+N+GTPRI+VGNS
Sbjct: 169 VRLEEDRTNAMGVLTTLPLTPLPLALGPQIMIVTRIMGSQFLCVSTARNNGTPRISVGNS 228

Query: 121 TIIPQEVRNILPTRNRTQGVP 130
           T++PQEVRN  P RNRTQ +P
Sbjct: 229 TVVPQEVRNNPPMRNRTQDMP 249

[Close]

BLAST of IVF0016580 vs. NCBI nr
Match: KAA0025942.1 (Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [Cucumis melo var. makuwa])

HSP 1 Score: 171 bits (433), Expect = 3.67e-48
Identity = 87/128 (67.97%), Postives = 98/128 (76.56%), Query Frame = 0


Query: 1   MDLCRETVWVTSNDGILYAKLEEADRTYDFLGGLNPKFDIVCGHILGQRPLPSLMEVCYE 60
           MDLC+ETVW T NDG  YAKLEEAD  YDFL GLNPKFD VCG ILGQRPLPSLMEVC++
Sbjct: 109 MDLCKETVWDTPNDGTKYAKLEEADLVYDFLAGLNPKFDTVCGRILGQRPLPSLMEVCFK 168

Query: 61  VRLEEDRTNAMSILTTPAIDSTAFNARN-----------QSLYVSTAKNSGTPRINVGNS 117
           VRLEEDR NAM +LTTP IDS  F+AR+           Q L VSTA N+GT RI+VGNS
Sbjct: 169 VRLEEDRINAMGVLTTPTIDSATFSARSSIMIVTRIMGSQFLCVSTAINNGTLRISVGNS 228

The following BLAST results are available for this feature:

BLAST of IVF0016580 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0016580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DBU1	8.3e-43	95.56	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold29...	[more]
A0A5A7UVH3	8.3e-43	70.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7VJZ8	1.1e-42	67.38	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold37G00...	[more]
A0A5A7T6N2	3.5e-41	69.29	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold121G0...	[more]
A0A5D3DU34	3.5e-41	69.29	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold322G0...	[more]

BLAST of IVF0016580 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0048797.1	3.72e-53	98.85	reverse transcriptase [Cucumis melo var. makuwa] >TYK20749.1 reverse transcripta...	[more]
KAA0041425.1	4.42e-51	65.00	Beta-galactosidase [Cucumis melo var. makuwa]	[more]
KAA0058176.1	4.00e-50	70.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0065739.1	1.27e-49	67.38	Beta-galactosidase [Cucumis melo var. makuwa]	[more]
KAA0025942.1	3.67e-48	67.97	Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0016580 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0016580.1	IVF0016580.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity