IVF0016500 (gene) Melon (IVF77) v1

Overview
NameIVF0016500
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein, putative, Ty3-gypsy sub-class
Locationchr11: 21613264 .. 21613500 (-)
RNA-Seq ExpressionIVF0016500
SyntenyIVF0016500
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAGGCCTCGACGACTACAAGGCCATTAGCCTAAAGTGCTTCGATCTTCAAGACTTTTACTTCGAGGACTTTAGCCTACACTCCTGGCATCGTCCCTCACCTGTTTTCCTAAAGTATAGGTTAGGAAGCGAGCTCGTTGGAGGGAGAACTAAGGTCCAACCCAAAACGATCGAAAAGATGGCCAATGCTCTCCCAACGAGTGGCGAATTCTCGTCCGGTGTTAGAAAGCAATAA

mRNA sequence

ATGTCAGGCCTCGACGACTACAAGGCCATTAGCCTAAAGTGCTTCGATCTTCAAGACTTTTACTTCGAGGACTTTAGCCTACACTCCTGGCATCGTCCCTCACCTGTTTTCCTAAAGTATAGGTTAGGAAGCGAGCTCGTTGGAGGGAGAACTAAGGTCCAACCCAAAACGATCGAAAAGATGGCCAATGCTCTCCCAACGAGTGGCGAATTCTCGTCCGGTGTTAGAAAGCAATAA

Coding sequence (CDS)

ATGTCAGGCCTCGACGACTACAAGGCCATTAGCCTAAAGTGCTTCGATCTTCAAGACTTTTACTTCGAGGACTTTAGCCTACACTCCTGGCATCGTCCCTCACCTGTTTTCCTAAAGTATAGGTTAGGAAGCGAGCTCGTTGGAGGGAGAACTAAGGTCCAACCCAAAACGATCGAAAAGATGGCCAATGCTCTCCCAACGAGTGGCGAATTCTCGTCCGGTGTTAGAAAGCAATAA

Protein sequence

MSGLDDYKAISLKCFDLQDFYFEDFSLHSWHRPSPVFLKYRLGSELVGGRTKVQPKTIEKMANALPTSGEFSSGVRKQ
Homology
BLAST of IVF0016500 vs. ExPASy TrEMBL
Match: A0A5A7VEB1 (Retrotransposon protein, putative, Ty3-gypsy subclass, expressed OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold638G00210 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.3e-14
Identity = 44/58 (75.86%), Postives = 47/58 (81.03%), Query Frame = 0

Query: 13   KCFDLQDFYFEDFSLHSWHRPSPVFLKYRLGSELVGGRTKVQPKTIEKMANALPTSGE 71
            K F+LQD Y EDFSLHSW  PSPVF KYR GS+LV GRTKVQ  TIEKMAN LPTSG+
Sbjct: 1290 KHFELQDSYSEDFSLHSWQCPSPVFQKYRTGSKLVRGRTKVQLVTIEKMANTLPTSGK 1347

BLAST of IVF0016500 vs. ExPASy TrEMBL
Match: A0A5D3BG85 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1625G00140 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 5.9e-12
Identity = 38/51 (74.51%), Postives = 42/51 (82.35%), Query Frame = 0

Query: 23 EDFSLHSWHRPSPVFLKYRLGSELVGGRTKVQPKTIEKMANALPTSGEFSS 74
          +DFSLH WH  SP+F +YR GSELVG RTKVQ  TIEK+ANALPTSGE SS
Sbjct: 20 KDFSLHCWHHSSPIFPRYRSGSELVGRRTKVQSGTIEKIANALPTSGERSS 70

BLAST of IVF0016500 vs. ExPASy TrEMBL
Match: A0A5A7VGQ5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold638G00090 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.5e-10
Identity = 41/62 (66.13%), Postives = 43/62 (69.35%), Query Frame = 0

Query: 15  FDLQDFYFEDFSLHSWHRPSPVFLKYRLGSELVGGRTKVQPKTIEKMANALPTSGEFSSG 74
           F+LQD   +DFSLHS HRPS VF KYR G ELV  RTKVQ   IEKMANAL  SG  S G
Sbjct: 374 FELQDSSSKDFSLHSLHRPSLVFAKYRSGCELVWERTKVQHGAIEKMANALRMSGASSFG 433

Query: 75  VR 77
            R
Sbjct: 434 TR 435

BLAST of IVF0016500 vs. ExPASy TrEMBL
Match: A0A5A7U1Q6 (Retrotransposon protein, putative, Ty3-gypsy sub-class OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00650 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 9.4e-10
Identity = 38/56 (67.86%), Postives = 41/56 (73.21%), Query Frame = 0

Query: 18  QDFYFEDFSLHSWHRPSPVFLKYRLGSELVGGRTKVQPKTIEKMANALPTSGEFSS 74
           Q+ Y EDFSLHSW+ PS V LKY   +EL GGRTKVQP  IEKM NAL  SGE SS
Sbjct: 88  QNSYSEDFSLHSWNCPSLVVLKYSSRNELGGGRTKVQPAKIEKMVNALSMSGERSS 143

BLAST of IVF0016500 vs. ExPASy TrEMBL
Match: A0A5D3CKZ2 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold769G00020 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 4.8e-06
Identity = 28/43 (65.12%), Postives = 33/43 (76.74%), Query Frame = 0

Query: 10 ISLKCFDLQDFYFEDFSLHSWHRPSPVFLKYRLGSELVGGRTK 53
          I  KCF+L D YFE+F+LHSWH PS ++ KYR GSEL GGR K
Sbjct: 47 IGHKCFELWDSYFENFNLHSWHWPSHIYSKYRSGSEL-GGRKK 88

BLAST of IVF0016500 vs. NCBI nr
Match: KAA0065520.1 (retrotransposon protein, putative, Ty3-gypsy subclass, expressed [Cucumis melo var. makuwa])

HSP 1 Score: 87.8 bits (216), Expect = 5.25e-18
Identity = 44/62 (70.97%), Postives = 48/62 (77.42%), Query Frame = 0

Query: 9    AISLKCFDLQDFYFEDFSLHSWHRPSPVFLKYRLGSELVGGRTKVQPKTIEKMANALPTS 68
             +  K F+LQD Y EDFSLHSW  PSPVF KYR GS+LV GRTKVQ  TIEKMAN LPTS
Sbjct: 1286 CVGHKHFELQDSYSEDFSLHSWQCPSPVFQKYRTGSKLVRGRTKVQLVTIEKMANTLPTS 1345

Query: 69   GE 70
            G+
Sbjct: 1346 GK 1347

BLAST of IVF0016500 vs. NCBI nr
Match: TYJ98800.1 (uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 79.7 bits (195), Expect = 3.57e-15
Identity = 38/51 (74.51%), Postives = 42/51 (82.35%), Query Frame = 0

Query: 23 EDFSLHSWHRPSPVFLKYRLGSELVGGRTKVQPKTIEKMANALPTSGEFSS 73
          +DFSLH WH  SP+F +YR GSELVG RTKVQ  TIEK+ANALPTSGE SS
Sbjct: 20 KDFSLHCWHHSSPIFPRYRSGSELVGRRTKVQSGTIEKIANALPTSGERSS 70

BLAST of IVF0016500 vs. NCBI nr
Match: KAA0065516.1 (uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa])

HSP 1 Score: 73.6 bits (179), Expect = 5.32e-13
Identity = 41/62 (66.13%), Postives = 43/62 (69.35%), Query Frame = 0

Query: 15  FDLQDFYFEDFSLHSWHRPSPVFLKYRLGSELVGGRTKVQPKTIEKMANALPTSGEFSSG 74
           F+LQD   +DFSLHS HRPS VF KYR G ELV  RTKVQ   IEKMANAL  SG  S G
Sbjct: 374 FELQDSSSKDFSLHSLHRPSLVFAKYRSGCELVWERTKVQHGAIEKMANALRMSGASSFG 433

Query: 75  VR 76
            R
Sbjct: 434 TR 435

BLAST of IVF0016500 vs. NCBI nr
Match: KAA0047409.1 (retrotransposon protein, putative, Ty3-gypsy sub-class [Cucumis melo var. makuwa] >TYK14084.1 retrotransposon protein, putative, Ty3-gypsy sub-class [Cucumis melo var. makuwa])

HSP 1 Score: 72.0 bits (175), Expect = 1.82e-12
Identity = 38/56 (67.86%), Postives = 41/56 (73.21%), Query Frame = 0

Query: 18  QDFYFEDFSLHSWHRPSPVFLKYRLGSELVGGRTKVQPKTIEKMANALPTSGEFSS 73
           Q+ Y EDFSLHSW+ PS V LKY   +EL GGRTKVQP  IEKM NAL  SGE SS
Sbjct: 88  QNSYSEDFSLHSWNCPSLVVLKYSSRNELGGGRTKVQPAKIEKMVNALSMSGERSS 143

BLAST of IVF0016500 vs. NCBI nr
Match: KAA0051945.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK12215.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 58.5 bits (140), Expect = 1.81e-08
Identity = 28/43 (65.12%), Postives = 33/43 (76.74%), Query Frame = 0

Query: 10 ISLKCFDLQDFYFEDFSLHSWHRPSPVFLKYRLGSELVGGRTK 52
          I  KCF+L D YFE+F+LHSWH PS ++ KYR GSEL GGR K
Sbjct: 47 IGHKCFELWDSYFENFNLHSWHWPSHIYSKYRSGSEL-GGRKK 88

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7VEB11.3e-1475.86Retrotransposon protein, putative, Ty3-gypsy subclass, expressed OS=Cucumis melo... [more]
A0A5D3BG855.9e-1274.51Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VGQ52.5e-1066.13Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7U1Q69.4e-1067.86Retrotransposon protein, putative, Ty3-gypsy sub-class OS=Cucumis melo var. maku... [more]
A0A5D3CKZ24.8e-0665.12Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
Match NameE-valueIdentityDescription
KAA0065520.15.25e-1870.97retrotransposon protein, putative, Ty3-gypsy subclass, expressed [Cucumis melo v... [more]
TYJ98800.13.57e-1574.51uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa][more]
KAA0065516.15.32e-1366.13uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa][more]
KAA0047409.11.82e-1267.86retrotransposon protein, putative, Ty3-gypsy sub-class [Cucumis melo var. makuwa... [more]
KAA0051945.11.81e-0865.12pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK12215... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0016500.1IVF0016500.1mRNA