IVF0016500 (gene) Melon (IVF77) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCAGGCCTCGACGACTACAAGGCCATTAGCCTAAAGTGCTTCGATCTTCAAGACTTTTACTTCGAGGACTTTAGCCTACACTCCTGGCATCGTCCCTCACCTGTTTTCCTAAAGTATAGGTTAGGAAGCGAGCTCGTTGGAGGGAGAACTAAGGTCCAACCCAAAACGATCGAAAAGATGGCCAATGCTCTCCCAACGAGTGGCGAATTCTCGTCCGGTGTTAGAAAGCAATAA ATGTCAGGCCTCGACGACTACAAGGCCATTAGCCTAAAGTGCTTCGATCTTCAAGACTTTTACTTCGAGGACTTTAGCCTACACTCCTGGCATCGTCCCTCACCTGTTTTCCTAAAGTATAGGTTAGGAAGCGAGCTCGTTGGAGGGAGAACTAAGGTCCAACCCAAAACGATCGAAAAGATGGCCAATGCTCTCCCAACGAGTGGCGAATTCTCGTCCGGTGTTAGAAAGCAATAA ATGTCAGGCCTCGACGACTACAAGGCCATTAGCCTAAAGTGCTTCGATCTTCAAGACTTTTACTTCGAGGACTTTAGCCTACACTCCTGGCATCGTCCCTCACCTGTTTTCCTAAAGTATAGGTTAGGAAGCGAGCTCGTTGGAGGGAGAACTAAGGTCCAACCCAAAACGATCGAAAAGATGGCCAATGCTCTCCCAACGAGTGGCGAATTCTCGTCCGGTGTTAGAAAGCAATAA MSGLDDYKAISLKCFDLQDFYFEDFSLHSWHRPSPVFLKYRLGSELVGGRTKVQPKTIEKMANALPTSGEFSSGVRKQ Homology
BLAST of IVF0016500 vs. ExPASy TrEMBL
Match: A0A5A7VEB1 (Retrotransposon protein, putative, Ty3-gypsy subclass, expressed OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold638G00210 PE=4 SV=1) HSP 1 Score: 88.6 bits (218), Expect = 1.3e-14 Identity = 44/58 (75.86%), Postives = 47/58 (81.03%), Query Frame = 0
BLAST of IVF0016500 vs. ExPASy TrEMBL
Match: A0A5D3BG85 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1625G00140 PE=4 SV=1) HSP 1 Score: 79.7 bits (195), Expect = 5.9e-12 Identity = 38/51 (74.51%), Postives = 42/51 (82.35%), Query Frame = 0
BLAST of IVF0016500 vs. ExPASy TrEMBL
Match: A0A5A7VGQ5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold638G00090 PE=4 SV=1) HSP 1 Score: 74.3 bits (181), Expect = 2.5e-10 Identity = 41/62 (66.13%), Postives = 43/62 (69.35%), Query Frame = 0
BLAST of IVF0016500 vs. ExPASy TrEMBL
Match: A0A5A7U1Q6 (Retrotransposon protein, putative, Ty3-gypsy sub-class OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00650 PE=4 SV=1) HSP 1 Score: 72.4 bits (176), Expect = 9.4e-10 Identity = 38/56 (67.86%), Postives = 41/56 (73.21%), Query Frame = 0
BLAST of IVF0016500 vs. ExPASy TrEMBL
Match: A0A5D3CKZ2 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold769G00020 PE=4 SV=1) HSP 1 Score: 60.1 bits (144), Expect = 4.8e-06 Identity = 28/43 (65.12%), Postives = 33/43 (76.74%), Query Frame = 0
BLAST of IVF0016500 vs. NCBI nr
Match: KAA0065520.1 (retrotransposon protein, putative, Ty3-gypsy subclass, expressed [Cucumis melo var. makuwa]) HSP 1 Score: 87.8 bits (216), Expect = 5.25e-18 Identity = 44/62 (70.97%), Postives = 48/62 (77.42%), Query Frame = 0
BLAST of IVF0016500 vs. NCBI nr
Match: TYJ98800.1 (uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa]) HSP 1 Score: 79.7 bits (195), Expect = 3.57e-15 Identity = 38/51 (74.51%), Postives = 42/51 (82.35%), Query Frame = 0
BLAST of IVF0016500 vs. NCBI nr
Match: KAA0065516.1 (uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]) HSP 1 Score: 73.6 bits (179), Expect = 5.32e-13 Identity = 41/62 (66.13%), Postives = 43/62 (69.35%), Query Frame = 0
BLAST of IVF0016500 vs. NCBI nr
Match: KAA0047409.1 (retrotransposon protein, putative, Ty3-gypsy sub-class [Cucumis melo var. makuwa] >TYK14084.1 retrotransposon protein, putative, Ty3-gypsy sub-class [Cucumis melo var. makuwa]) HSP 1 Score: 72.0 bits (175), Expect = 1.82e-12 Identity = 38/56 (67.86%), Postives = 41/56 (73.21%), Query Frame = 0
BLAST of IVF0016500 vs. NCBI nr
Match: KAA0051945.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK12215.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]) HSP 1 Score: 58.5 bits (140), Expect = 1.81e-08 Identity = 28/43 (65.12%), Postives = 33/43 (76.74%), Query Frame = 0
The following BLAST results are available for this feature:
Relationships
The following mRNA feature(s) are a part of this gene:
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