IVF0016493 (gene) Melon (IVF77) v1

Overview


Name	IVF0016493
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	LOB domain-containing protein
Location	chr11: 24346533 .. 24347674 (+)
RNA-Seq Expression	IVF0016493
Synteny	IVF0016493

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCTTCAACTCTCCAAATCCAATTCTCAACATTCGGAAAAAAAACCCATTACTTTTAATCATTGGGTTTTTCTTTTCTTCTTTTAGTATTGAAGAACAAAATTATTGTGTACTAATATTATTGCCAATGGGAGTTGGTTCATCGCCTTGCGCCTCTTGTAAATTGCTACGACGACGGTGTGCAAAAGACTGTATTTTTGCTCCTTATTTCCCTCCCGAAGACCCTCTCAAGTTCGCCATTGTTCATAAGATCTTTGGTGCTAGCAATGTCAGCAAAATGTTGCAGGTCTCCTCTTCTTAAATCTTGTTCTCTCTTTTTTTAGTTCAATTTGGTAGTTTGGATTACATATTCGAACATTATCCAACGTTTTAGTTTCTAGACGTACAATTACTCATTGGTGTTTATGATATAATTTTTGTTTCAAAACTTTCGGGTCAATTAGATTTAAGAAGGTAATGGAATGATTACATTGATCACTATGTTCAAACTCAATTCATTATTTAAGAGCTTTTGAAGATACAAAATTGAACTTGCATTGCATGGTAGTAGAACTATAACAATGACATTAAATTATTTTCCCCAAAATACTTTTTAGTTTATTTGTAAAAAAAAATGAACGTGATTTTTTTATTAGGAGGTTCCAATAGATCAAAGAGCAGATGCAGTGAGTAGTATGGTATATGAAGCGAGTGCAAGAATGCAAGATCCAGTATATGGTTGTGTAGGAACAATCGCGTTTTTGCAAAACGAAGTGTCTCGATTAGAAATTCAACTAGGGGCAGCTCAAGCAGAGATTTTGACATTACAAATGCGACAACAAGAGACCTCAACAACATTTCCAACGACTACAACCCAAATGGATCAAGATGAACAAAATCTTATGATTTTCTCAAATACCGATTCTTCTAATTCATTACATATTTTTCAGGCAACGGAGGATTATTACCATATGTGGACTTGAATAACTTTCATGATTATTATTATCATCATCATGTAACATGAAGTATATATATCATATATAGACATATAAACATTAATACAAAAAGGCTTACAATTTTTTATATATATATTTTACTACTTTTTTCCCCTATTCTCTTCGACTATTCTTGTTGTCATTTCTTTATTTTTCTATAACATGGGAG

mRNA sequence

CTCTTCAACTCTCCAAATCCAATTCTCAACATTCGGAAAAAAAACCCATTACTTTTAATCATTGGGTTTTTCTTTTCTTCTTTTAGTATTGAAGAACAAAATTATTGTGTACTAATATTATTGCCAATGGGAGTTGGTTCATCGCCTTGCGCCTCTTGTAAATTGCTACGACGACGGTGTGCAAAAGACTGTATTTTTGCTCCTTATTTCCCTCCCGAAGACCCTCTCAAGTTCGCCATTGTTCATAAGATCTTTGGTGCTAGCAATGTCAGCAAAATGTTGCAGGAGGTTCCAATAGATCAAAGAGCAGATGCAGTGAGTAGTATGGTATATGAAGCGAGTGCAAGAATGCAAGATCCAGTATATGGTTGTGTAGGAACAATCGCGTTTTTGCAAAACGAAGTGTCTCGATTAGAAATTCAACTAGGGGCAGCTCAAGCAGAGATTTTGACATTACAAATGCGACAACAAGAGACCTCAACAACATTTCCAACGACTACAACCCAAATGGATCAAGATGAACAAAATCTTATGATTTTCTCAAATACCGATTCTTCTAATTCATTACATATTTTTCAGGCAACGGAGGATTATTACCATATGTGGACTTGAATAACTTTCATGATTATTATTATCATCATCATGTAACATGAAGTATATATATCATATATAGACATATAAACATTAATACAAAAAGGCTTACAATTTTTTATATATATATTTTACTACTTTTTTCCCCTATTCTCTTCGACTATTCTTGTTGTCATTTCTTTATTTTTCTATAACATGGGAG

Coding sequence (CDS)

ATGGGAGTTGGTTCATCGCCTTGCGCCTCTTGTAAATTGCTACGACGACGGTGTGCAAAAGACTGTATTTTTGCTCCTTATTTCCCTCCCGAAGACCCTCTCAAGTTCGCCATTGTTCATAAGATCTTTGGTGCTAGCAATGTCAGCAAAATGTTGCAGGAGGTTCCAATAGATCAAAGAGCAGATGCAGTGAGTAGTATGGTATATGAAGCGAGTGCAAGAATGCAAGATCCAGTATATGGTTGTGTAGGAACAATCGCGTTTTTGCAAAACGAAGTGTCTCGATTAGAAATTCAACTAGGGGCAGCTCAAGCAGAGATTTTGACATTACAAATGCGACAACAAGAGACCTCAACAACATTTCCAACGACTACAACCCAAATGGATCAAGATGAACAAAATCTTATGATTTTCTCAAATACCGATTCTTCTAATTCATTACATATTTTTCAGGCAACGGAGGATTATTACCATATGTGGACTTGA

Protein sequence

MGVGSSPCASCKLLRRRCAKDCIFAPYFPPEDPLKFAIVHKIFGASNVSKMLQEVPIDQRADAVSSMVYEASARMQDPVYGCVGTIAFLQNEVSRLEIQLGAAQAEILTLQMRQQETSTTFPTTTTQMDQDEQNLMIFSNTDSSNSLHIFQATEDYYHMWT

Homology

[Close]

BLAST of IVF0016493 vs. ExPASy Swiss-Prot
Match: Q8LBW3 (LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 SV=2)

HSP 1 Score: 191.8 bits (486), Expect = 5.9e-48
Identity = 94/139 (67.63%), Postives = 118/139 (84.89%), Query Frame = 0


Query: 2   GVGSSPCASCKLLRRRCAKDCIFAPYFPPEDPLKFAIVHKIFGASNVSKMLQEVPIDQRA 61
           G GSSPCASCKLLRRRCAKDCIFAPYFPP+DP KFAIVHK+FGASNVSKMLQE+P+ QRA
Sbjct: 3   GPGSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRA 62

Query: 62  DAVSSMVYEASARMQDPVYGCVGTIAFLQNEVSRLEIQLGAAQAEILTLQMRQQETSTTF 121
           DAV+S+V+EA+AR++DPVYGCVG I++LQN+VS+L++QL  AQAEIL +QM Q E +   
Sbjct: 63  DAVNSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQM-QNEPTLQS 122

Query: 122 PTTTTQMDQDEQNLMIFSN 141
                ++DQD + L++ +N
Sbjct: 123 HHQVLELDQDHKALLLNNN 140

[Close]

BLAST of IVF0016493 vs. ExPASy Swiss-Prot
Match: Q9SHE9 (LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 6.0e-40
Identity = 78/118 (66.10%), Postives = 100/118 (84.75%), Query Frame = 0


Query: 5   SSPCASCKLLRRRCAKDCIFAPYFPPEDPLKFAIVHKIFGASNVSKMLQEVPIDQRADAV 64
           +SPCA+CKLLRRRCA+DC+F+PYFP ++P KFA VH++FGASNV+KMLQE+PI QR DAV
Sbjct: 11  ASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAV 70

Query: 65  SSMVYEASARMQDPVYGCVGTIAFLQNEVSRLEIQLGAAQAEILTLQMRQQETSTTFP 123
           SSMVYEA+AR++DPVYGCVG I+ LQ ++  L+ QL  AQAE++ L++RQ   ST FP
Sbjct: 71  SSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQ---STNFP 125

[Close]

BLAST of IVF0016493 vs. ExPASy Swiss-Prot
Match: Q9LQR0 (LOB domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=LBD1 PE=2 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 5.2e-36
Identity = 72/135 (53.33%), Postives = 93/135 (68.89%), Query Frame = 0


Query: 6   SPCASCKLLRRRCAKDCIFAPYFPPEDPLKFAIVHKIFGASNVSKMLQEVPIDQRADAVS 65
           SPCA+CK+LRRRCA+ C+ APYFPP DP KF I H++FGASN+ K LQE+P  QR DAV+
Sbjct: 32  SPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVN 91

Query: 66  SMVYEASARMQDPVYGCVGTIAFLQNEVSRLEIQLGAAQAEILTLQMRQQETSTTFPTTT 125
           SMVYEA AR++DPVYGC G I  LQ +VS L+ QL  AQ E++ +Q ++           
Sbjct: 92  SMVYEAEARIRDPVYGCAGAIYHLQRQVSELQAQLAKAQVEMVNMQFQRSNLLELIYNMD 151

Query: 126 TQMDQDEQNLMIFSN 141
            Q  Q++ N+   SN
Sbjct: 152 QQQKQEQDNMSFESN 166

[Close]

BLAST of IVF0016493 vs. ExPASy Swiss-Prot
Match: Q9SA51 (LOB domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=LBD3 PE=2 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 2.0e-35
Identity = 71/107 (66.36%), Postives = 89/107 (83.18%), Query Frame = 0


Query: 6   SPCASCKLLRRRCAKD-CIFAPYFPPEDPLKFAIVHKIFGASNVSKMLQEVPIDQRADAV 65
           SPCA CKLLRR+C KD C+FAPYFP ++P KFAIVHKIFGASNV+KMLQE+  + R+DAV
Sbjct: 13  SPCAGCKLLRRKCVKDSCVFAPYFPAKEPYKFAIVHKIFGASNVNKMLQELSENHRSDAV 72

Query: 66  SSMVYEASARMQDPVYGCVGTIAFLQNEVSRLEIQLGAAQAEILTLQ 112
            SMVYEA+AR+QDPVYGCVGTI+ L  ++  L+ QL  AQAE++ ++
Sbjct: 73  DSMVYEANARIQDPVYGCVGTISSLHRQLETLQTQLAFAQAELIHIR 119

[Close]

BLAST of IVF0016493 vs. ExPASy Swiss-Prot
Match: Q9SK08 (LOB domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=LBD11 PE=2 SV=2)

HSP 1 Score: 147.5 bits (371), Expect = 1.3e-34
Identity = 75/153 (49.02%), Postives = 97/153 (63.40%), Query Frame = 0


Query: 6   SPCASCKLLRRRCAKDCIFAPYFPPEDPLKFAIVHKIFGASNVSKMLQEVPIDQRADAVS 65
           SPCA+CK+LRRRCA  C+ APYFPP DP KF I H++FGASN+ K LQE+P  QR DAV+
Sbjct: 54  SPCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVN 113

Query: 66  SMVYEASARMQDPVYGCVGTIAFLQNEVSRLEIQLGAAQAEILTLQMRQQ---ETSTTFP 125
           SMVYEA ARM+DPVYGC G I  LQ +VS L+ QL   Q E++ +Q+++    E      
Sbjct: 114 SMVYEAGARMRDPVYGCAGAIYHLQRQVSELQAQLAKTQVELVGMQLQRSSLLELIYNME 173

Query: 126 TTTTQMDQDEQNLMIFSNTDSSNSLHIFQATED 156
            T   + +  Q  M F ++  S    I    E+
Sbjct: 174 QTKLSVQEQGQQKMSFESSFESGDEFISSPDEE 206

[Close]

BLAST of IVF0016493 vs. ExPASy TrEMBL
Match: A0A1S3CKM4 (LOB domain-containing protein 12-like OS=Cucumis melo OX=3656 GN=LOC103501884 PE=3 SV=1)

HSP 1 Score: 320.9 bits (821), Expect = 3.1e-84
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 0


Query: 1   MGVGSSPCASCKLLRRRCAKDCIFAPYFPPEDPLKFAIVHKIFGASNVSKMLQEVPIDQR 60
           MGVGSSPCASCKLLRRRCAKDCIFAPYFPPEDPLKFAIVHKIFGASNVSKMLQEVPIDQR
Sbjct: 1   MGVGSSPCASCKLLRRRCAKDCIFAPYFPPEDPLKFAIVHKIFGASNVSKMLQEVPIDQR 60

Query: 61  ADAVSSMVYEASARMQDPVYGCVGTIAFLQNEVSRLEIQLGAAQAEILTLQMRQQETSTT 120
           ADAVSSMVYEASARMQDPVYGCVGTIAFLQNEVSRLEIQLGAAQAEILTLQMRQQETSTT
Sbjct: 61  ADAVSSMVYEASARMQDPVYGCVGTIAFLQNEVSRLEIQLGAAQAEILTLQMRQQETSTT 120

Query: 121 FPTTTTQMDQDEQNLMIFSNTDSSNSLHIFQATEDYYHMWT 162
           FPTTTTQMDQDEQNLMIFSNTDSSNSLHIFQATEDYYHMWT
Sbjct: 121 FPTTTTQMDQDEQNLMIFSNTDSSNSLHIFQATEDYYHMWT 161

[Close]

BLAST of IVF0016493 vs. ExPASy TrEMBL
Match: A0A0A0KBK5 (LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G181550 PE=3 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 2.1e-72
Identity = 142/162 (87.65%), Postives = 149/162 (91.98%), Query Frame = 0


Query: 1   MGVGSSPCASCKLLRRRCAKDCIFAPYFPPEDPLKFAIVHKIFGASNVSKMLQEVPIDQR 60
           MGVGSSPCASCKLLRRRCAKDCIFAPYFPP DPLKFAIVHKIFGASNVSKMLQEVP+DQR
Sbjct: 1   MGVGSSPCASCKLLRRRCAKDCIFAPYFPPHDPLKFAIVHKIFGASNVSKMLQEVPVDQR 60

Query: 61  ADAVSSMVYEASARMQDPVYGCVGTIAFLQNEVSRLEIQLGAAQAEILTLQMR-QQETST 120
           ADAVSSMVYEASARMQDPVYGCVG I FLQNEVS+LEIQLGAA+AEIL LQMR QQE S 
Sbjct: 61  ADAVSSMVYEASARMQDPVYGCVGKILFLQNEVSQLEIQLGAARAEILMLQMRQQQEASI 120

Query: 121 TFPTTTTQMDQDEQNLMIFSNTDSSNSLHIFQATEDYYHMWT 162
           TFP TTTQMDQDEQNLMI SN DSSNS H+FQA +D+Y +WT
Sbjct: 121 TFPMTTTQMDQDEQNLMILSNADSSNSFHVFQAADDHYPLWT 162

[Close]

BLAST of IVF0016493 vs. ExPASy TrEMBL
Match: A0A6J1L5Y7 (LOB domain-containing protein 12-like OS=Cucurbita maxima OX=3661 GN=LOC111499469 PE=3 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 1.0e-58
Identity = 119/161 (73.91%), Postives = 135/161 (83.85%), Query Frame = 0


Query: 1   MGVGSSPCASCKLLRRRCAKDCIFAPYFPPEDPLKFAIVHKIFGASNVSKMLQEVPIDQR 60
           MG GSSPCASCKLLRRRCAKDCIFAPYFPP+DP KFAIVHKIFGASNVSKMLQE+P+DQR
Sbjct: 1   MGAGSSPCASCKLLRRRCAKDCIFAPYFPPDDPYKFAIVHKIFGASNVSKMLQELPLDQR 60

Query: 61  ADAVSSMVYEASARMQDPVYGCVGTIAFLQNEVSRLEIQLGAAQAEILTLQMRQQETSTT 120
            DAV+SMVYEASARM+DPVYGCVG I FLQN+VSRLE+QL AAQAEIL+ QM+QQ  S +
Sbjct: 61  PDAVNSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQQAASAS 120

Query: 121 FPTTTTQMDQDEQNLMIFSNTDSSNSLHIFQATEDYYHMWT 162
           FP   TQM+Q +QNL+  SN DS NS+      EDY  +W+
Sbjct: 121 FP--MTQMNQYDQNLVFLSNADSFNSVDGSPEVEDYCSLWS 159

[Close]

BLAST of IVF0016493 vs. ExPASy TrEMBL
Match: A0A6J1G7F7 (LOB domain-containing protein 12-like OS=Cucurbita moschata OX=3662 GN=LOC111451558 PE=3 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 6.6e-58
Identity = 118/161 (73.29%), Postives = 134/161 (83.23%), Query Frame = 0


Query: 1   MGVGSSPCASCKLLRRRCAKDCIFAPYFPPEDPLKFAIVHKIFGASNVSKMLQEVPIDQR 60
           MG GSSPCASCKLLRRRCAKDCIFAPYFPP+DP KFAIVHKIFGASNVSKMLQE+P+DQR
Sbjct: 1   MGAGSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKIFGASNVSKMLQELPLDQR 60

Query: 61  ADAVSSMVYEASARMQDPVYGCVGTIAFLQNEVSRLEIQLGAAQAEILTLQMRQQETSTT 120
            DAV+SMVYEASARM+DPVYGCVG I FLQN+VSRLE+QL AAQAEIL+ QM+QQ    +
Sbjct: 61  PDAVNSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQQAAPAS 120

Query: 121 FPTTTTQMDQDEQNLMIFSNTDSSNSLHIFQATEDYYHMWT 162
           FP   TQM+Q +QNL+  SN DS NS+      EDY  +W+
Sbjct: 121 FP--MTQMNQYDQNLVFLSNADSFNSVDGSPEVEDYCSLWS 159

[Close]

BLAST of IVF0016493 vs. ExPASy TrEMBL
Match: A0A2G3CBY3 (LOB domain-containing protein 12 OS=Capsicum chinense OX=80379 GN=BC332_17441 PE=3 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 6.6e-50
Identity = 105/148 (70.95%), Postives = 125/148 (84.46%), Query Frame = 0


Query: 1   MGVGSSPCASCKLLRRRCAKDCIFAPYFPPEDPLKFAIVHKIFGASNVSKMLQEVPIDQR 60
           MG GSSPCASCKLLRRRCAKDCIFAPYFPP+DP KFAIVHK+FGASNVSKMLQE+PI QR
Sbjct: 1   MGTGSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPIQQR 60

Query: 61  ADAVSSMVYEASARMQDPVYGCVGTIAFLQNEVSRLEIQLGAAQAEILTLQMRQQETSTT 120
           ADAVSS+VYEA+AR++DPVYGCVG I+FLQN+VS+L++QL  AQAEIL +QM+Q+     
Sbjct: 61  ADAVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAQAEILCIQMQQEPVPCN 120

Query: 121 FPTTTTQMDQDEQNLMIFSNTDSSNSLH 149
            PTT   M+ D+ + + FS T +SNS H
Sbjct: 121 LPTTI--MEPDQLDKLPFS-TSNSNSNH 145

[Close]

BLAST of IVF0016493 vs. NCBI nr
Match: XP_008463841.1 (PREDICTED: LOB domain-containing protein 12-like [Cucumis melo])

HSP 1 Score: 320 bits (819), Expect = 4.94e-110
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 0


Query: 1   MGVGSSPCASCKLLRRRCAKDCIFAPYFPPEDPLKFAIVHKIFGASNVSKMLQEVPIDQR 60
           MGVGSSPCASCKLLRRRCAKDCIFAPYFPPEDPLKFAIVHKIFGASNVSKMLQEVPIDQR
Sbjct: 1   MGVGSSPCASCKLLRRRCAKDCIFAPYFPPEDPLKFAIVHKIFGASNVSKMLQEVPIDQR 60

Query: 61  ADAVSSMVYEASARMQDPVYGCVGTIAFLQNEVSRLEIQLGAAQAEILTLQMRQQETSTT 120
           ADAVSSMVYEASARMQDPVYGCVGTIAFLQNEVSRLEIQLGAAQAEILTLQMRQQETSTT
Sbjct: 61  ADAVSSMVYEASARMQDPVYGCVGTIAFLQNEVSRLEIQLGAAQAEILTLQMRQQETSTT 120

Query: 121 FPTTTTQMDQDEQNLMIFSNTDSSNSLHIFQATEDYYHMWT 161
           FPTTTTQMDQDEQNLMIFSNTDSSNSLHIFQATEDYYHMWT
Sbjct: 121 FPTTTTQMDQDEQNLMIFSNTDSSNSLHIFQATEDYYHMWT 161

[Close]

BLAST of IVF0016493 vs. NCBI nr
Match: XP_004143222.1 (LOB domain-containing protein 12 [Cucumis sativus] >KGN47050.1 hypothetical protein Csa_021050 [Cucumis sativus])

HSP 1 Score: 280 bits (717), Expect = 1.83e-94
Identity = 142/162 (87.65%), Postives = 149/162 (91.98%), Query Frame = 0


Query: 1   MGVGSSPCASCKLLRRRCAKDCIFAPYFPPEDPLKFAIVHKIFGASNVSKMLQEVPIDQR 60
           MGVGSSPCASCKLLRRRCAKDCIFAPYFPP DPLKFAIVHKIFGASNVSKMLQEVP+DQR
Sbjct: 1   MGVGSSPCASCKLLRRRCAKDCIFAPYFPPHDPLKFAIVHKIFGASNVSKMLQEVPVDQR 60

Query: 61  ADAVSSMVYEASARMQDPVYGCVGTIAFLQNEVSRLEIQLGAAQAEILTLQMRQQ-ETST 120
           ADAVSSMVYEASARMQDPVYGCVG I FLQNEVS+LEIQLGAA+AEIL LQMRQQ E S 
Sbjct: 61  ADAVSSMVYEASARMQDPVYGCVGKILFLQNEVSQLEIQLGAARAEILMLQMRQQQEASI 120

Query: 121 TFPTTTTQMDQDEQNLMIFSNTDSSNSLHIFQATEDYYHMWT 161
           TFP TTTQMDQDEQNLMI SN DSSNS H+FQA +D+Y +WT
Sbjct: 121 TFPMTTTQMDQDEQNLMILSNADSSNSFHVFQAADDHYPLWT 162

[Close]

BLAST of IVF0016493 vs. NCBI nr
Match: XP_038902597.1 (LOB domain-containing protein 12 [Benincasa hispida])

HSP 1 Score: 266 bits (681), Expect = 4.89e-89
Identity = 134/161 (83.23%), Postives = 146/161 (90.68%), Query Frame = 0


Query: 1   MGVGSSPCASCKLLRRRCAKDCIFAPYFPPEDPLKFAIVHKIFGASNVSKMLQEVPIDQR 60
           M +GSSPCASCKLLRRRCAKDCIFAPYFPP+DPLKFAIVHKIFGASNVSKMLQEV ++QR
Sbjct: 1   MRIGSSPCASCKLLRRRCAKDCIFAPYFPPDDPLKFAIVHKIFGASNVSKMLQEVSVEQR 60

Query: 61  ADAVSSMVYEASARMQDPVYGCVGTIAFLQNEVSRLEIQLGAAQAEILTLQMRQQETSTT 120
            DAV+SMVYEASARM+DPVYGCVGTI+FLQNEVSRLEIQLGAAQAEILTLQM+QQ+   T
Sbjct: 61  TDAVNSMVYEASARMRDPVYGCVGTISFLQNEVSRLEIQLGAAQAEILTLQMQQQQAPMT 120

Query: 121 FPTTTTQMDQDEQNLMIFSNTDSSNSLHIFQATEDYYHMWT 161
              TTTQMDQD+QNL+IFSN DSSNS H FQ  EDYY +WT
Sbjct: 121 ---TTTQMDQDDQNLVIFSNVDSSNSFHTFQEMEDYYPLWT 158

[Close]

BLAST of IVF0016493 vs. NCBI nr
Match: XP_023006803.1 (LOB domain-containing protein 12-like [Cucurbita maxima])

HSP 1 Score: 235 bits (599), Expect = 1.58e-76
Identity = 119/161 (73.91%), Postives = 135/161 (83.85%), Query Frame = 0


Query: 1   MGVGSSPCASCKLLRRRCAKDCIFAPYFPPEDPLKFAIVHKIFGASNVSKMLQEVPIDQR 60
           MG GSSPCASCKLLRRRCAKDCIFAPYFPP+DP KFAIVHKIFGASNVSKMLQE+P+DQR
Sbjct: 1   MGAGSSPCASCKLLRRRCAKDCIFAPYFPPDDPYKFAIVHKIFGASNVSKMLQELPLDQR 60

Query: 61  ADAVSSMVYEASARMQDPVYGCVGTIAFLQNEVSRLEIQLGAAQAEILTLQMRQQETSTT 120
            DAV+SMVYEASARM+DPVYGCVG I FLQN+VSRLE+QL AAQAEIL+ QM+QQ  S +
Sbjct: 61  PDAVNSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQQAASAS 120

Query: 121 FPTTTTQMDQDEQNLMIFSNTDSSNSLHIFQATEDYYHMWT 161
           FP T  QM+Q +QNL+  SN DS NS+      EDY  +W+
Sbjct: 121 FPMT--QMNQYDQNLVFLSNADSFNSVDGSPEVEDYCSLWS 159

[Close]

BLAST of IVF0016493 vs. NCBI nr
Match: XP_023533075.1 (LOB domain-containing protein 12-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 233 bits (594), Expect = 9.11e-76
Identity = 118/161 (73.29%), Postives = 134/161 (83.23%), Query Frame = 0


Query: 1   MGVGSSPCASCKLLRRRCAKDCIFAPYFPPEDPLKFAIVHKIFGASNVSKMLQEVPIDQR 60
           MG GSSPCASCKLLRRRCAKDCIFAPYFPP+DP KFAIVHKIFGASNVSKMLQE+P+DQR
Sbjct: 1   MGAGSSPCASCKLLRRRCAKDCIFAPYFPPDDPYKFAIVHKIFGASNVSKMLQELPLDQR 60

Query: 61  ADAVSSMVYEASARMQDPVYGCVGTIAFLQNEVSRLEIQLGAAQAEILTLQMRQQETSTT 120
            DAV+SMVYEASARM+DPVYGCVG I FLQN+VSRLE+QL AAQAEIL+ QM+QQ    +
Sbjct: 61  PDAVNSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQQAAPAS 120

Query: 121 FPTTTTQMDQDEQNLMIFSNTDSSNSLHIFQATEDYYHMWT 161
           FP T  QM+Q +QNL+  SN DS NS+      EDY  +W+
Sbjct: 121 FPMT--QMNQYDQNLVFLSNADSFNSVDGSPEVEDYCSLWS 159

[Close]

BLAST of IVF0016493 vs. TAIR 10
Match: AT2G30130.1 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 191.8 bits (486), Expect = 4.2e-49
Identity = 94/139 (67.63%), Postives = 118/139 (84.89%), Query Frame = 0


Query: 2   GVGSSPCASCKLLRRRCAKDCIFAPYFPPEDPLKFAIVHKIFGASNVSKMLQEVPIDQRA 61
           G GSSPCASCKLLRRRCAKDCIFAPYFPP+DP KFAIVHK+FGASNVSKMLQE+P+ QRA
Sbjct: 3   GPGSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRA 62

Query: 62  DAVSSMVYEASARMQDPVYGCVGTIAFLQNEVSRLEIQLGAAQAEILTLQMRQQETSTTF 121
           DAV+S+V+EA+AR++DPVYGCVG I++LQN+VS+L++QL  AQAEIL +QM Q E +   
Sbjct: 63  DAVNSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQM-QNEPTLQS 122

Query: 122 PTTTTQMDQDEQNLMIFSN 141
                ++DQD + L++ +N
Sbjct: 123 HHQVLELDQDHKALLLNNN 140

[Close]

BLAST of IVF0016493 vs. TAIR 10
Match: AT1G31320.1 (LOB domain-containing protein 4 )

HSP 1 Score: 165.2 bits (417), Expect = 4.2e-41
Identity = 78/118 (66.10%), Postives = 100/118 (84.75%), Query Frame = 0


Query: 5   SSPCASCKLLRRRCAKDCIFAPYFPPEDPLKFAIVHKIFGASNVSKMLQEVPIDQRADAV 64
           +SPCA+CKLLRRRCA+DC+F+PYFP ++P KFA VH++FGASNV+KMLQE+PI QR DAV
Sbjct: 11  ASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAV 70

Query: 65  SSMVYEASARMQDPVYGCVGTIAFLQNEVSRLEIQLGAAQAEILTLQMRQQETSTTFP 123
           SSMVYEA+AR++DPVYGCVG I+ LQ ++  L+ QL  AQAE++ L++RQ   ST FP
Sbjct: 71  SSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQ---STNFP 125

[Close]

BLAST of IVF0016493 vs. TAIR 10
Match: AT1G07900.1 (LOB domain-containing protein 1 )

HSP 1 Score: 152.1 bits (383), Expect = 3.7e-37
Identity = 72/135 (53.33%), Postives = 93/135 (68.89%), Query Frame = 0


Query: 6   SPCASCKLLRRRCAKDCIFAPYFPPEDPLKFAIVHKIFGASNVSKMLQEVPIDQRADAVS 65
           SPCA+CK+LRRRCA+ C+ APYFPP DP KF I H++FGASN+ K LQE+P  QR DAV+
Sbjct: 32  SPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVN 91

Query: 66  SMVYEASARMQDPVYGCVGTIAFLQNEVSRLEIQLGAAQAEILTLQMRQQETSTTFPTTT 125
           SMVYEA AR++DPVYGC G I  LQ +VS L+ QL  AQ E++ +Q ++           
Sbjct: 92  SMVYEAEARIRDPVYGCAGAIYHLQRQVSELQAQLAKAQVEMVNMQFQRSNLLELIYNMD 151

Query: 126 TQMDQDEQNLMIFSN 141
            Q  Q++ N+   SN
Sbjct: 152 QQQKQEQDNMSFESN 166

[Close]

BLAST of IVF0016493 vs. TAIR 10
Match: AT1G16530.1 (ASYMMETRIC LEAVES 2-like 9 )

HSP 1 Score: 150.2 bits (378), Expect = 1.4e-36
Identity = 71/107 (66.36%), Postives = 89/107 (83.18%), Query Frame = 0


Query: 6   SPCASCKLLRRRCAKD-CIFAPYFPPEDPLKFAIVHKIFGASNVSKMLQEVPIDQRADAV 65
           SPCA CKLLRR+C KD C+FAPYFP ++P KFAIVHKIFGASNV+KMLQE+  + R+DAV
Sbjct: 13  SPCAGCKLLRRKCVKDSCVFAPYFPAKEPYKFAIVHKIFGASNVNKMLQELSENHRSDAV 72

Query: 66  SSMVYEASARMQDPVYGCVGTIAFLQNEVSRLEIQLGAAQAEILTLQ 112
            SMVYEA+AR+QDPVYGCVGTI+ L  ++  L+ QL  AQAE++ ++
Sbjct: 73  DSMVYEANARIQDPVYGCVGTISSLHRQLETLQTQLAFAQAELIHIR 119

[Close]

BLAST of IVF0016493 vs. TAIR 10
Match: AT2G28500.1 (LOB domain-containing protein 11 )

HSP 1 Score: 147.5 bits (371), Expect = 9.1e-36
Identity = 75/153 (49.02%), Postives = 97/153 (63.40%), Query Frame = 0


Query: 6   SPCASCKLLRRRCAKDCIFAPYFPPEDPLKFAIVHKIFGASNVSKMLQEVPIDQRADAVS 65
           SPCA+CK+LRRRCA  C+ APYFPP DP KF I H++FGASN+ K LQE+P  QR DAV+
Sbjct: 54  SPCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVN 113

Query: 66  SMVYEASARMQDPVYGCVGTIAFLQNEVSRLEIQLGAAQAEILTLQMRQQ---ETSTTFP 125
           SMVYEA ARM+DPVYGC G I  LQ +VS L+ QL   Q E++ +Q+++    E      
Sbjct: 114 SMVYEAGARMRDPVYGCAGAIYHLQRQVSELQAQLAKTQVELVGMQLQRSSLLELIYNME 173

Query: 126 TTTTQMDQDEQNLMIFSNTDSSNSLHIFQATED 156
            T   + +  Q  M F ++  S    I    E+
Sbjct: 174 QTKLSVQEQGQQKMSFESSFESGDEFISSPDEE 206

The following BLAST results are available for this feature:

BLAST of IVF0016493 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LBW3	5.9e-48	67.63	LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 S...	[more]
Q9SHE9	6.0e-40	66.10	LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=...	[more]
Q9LQR0	5.2e-36	53.33	LOB domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=LBD1 PE=2 SV=...	[more]
Q9SA51	2.0e-35	66.36	LOB domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=LBD3 PE=2 SV=...	[more]
Q9SK08	1.3e-34	49.02	LOB domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=LBD11 PE=2 S...	[more]

BLAST of IVF0016493 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CKM4	3.1e-84	100.00	LOB domain-containing protein 12-like OS=Cucumis melo OX=3656 GN=LOC103501884 PE...	[more]
A0A0A0KBK5	2.1e-72	87.65	LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G181550 PE=3 SV...	[more]
A0A6J1L5Y7	1.0e-58	73.91	LOB domain-containing protein 12-like OS=Cucurbita maxima OX=3661 GN=LOC11149946...	[more]
A0A6J1G7F7	6.6e-58	73.29	LOB domain-containing protein 12-like OS=Cucurbita moschata OX=3662 GN=LOC111451...	[more]
A0A2G3CBY3	6.6e-50	70.95	LOB domain-containing protein 12 OS=Capsicum chinense OX=80379 GN=BC332_17441 PE...	[more]

BLAST of IVF0016493 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008463841.1	4.94e-110	100.00	PREDICTED: LOB domain-containing protein 12-like [Cucumis melo]	[more]
XP_004143222.1	1.83e-94	87.65	LOB domain-containing protein 12 [Cucumis sativus] >KGN47050.1 hypothetical prot...	[more]
XP_038902597.1	4.89e-89	83.23	LOB domain-containing protein 12 [Benincasa hispida]	[more]
XP_023006803.1	1.58e-76	73.91	LOB domain-containing protein 12-like [Cucurbita maxima]	[more]
XP_023533075.1	9.11e-76	73.29	LOB domain-containing protein 12-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of IVF0016493 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G30130.1	4.2e-49	67.63	Lateral organ boundaries (LOB) domain family protein	[more]
AT1G31320.1	4.2e-41	66.10	LOB domain-containing protein 4	[more]
AT1G07900.1	3.7e-37	53.33	LOB domain-containing protein 1	[more]
AT1G16530.1	1.4e-36	66.36	ASYMMETRIC LEAVES 2-like 9	[more]
AT2G28500.1	9.1e-36	49.02	LOB domain-containing protein 11	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 86..113
None	No IPR available	PANTHER	PTHR31301	LOB DOMAIN-CONTAINING PROTEIN 4-RELATED	coord: 1..137
None	No IPR available	PANTHER	PTHR31301:SF97	LOB DOMAIN-CONTAINING PROTEIN 12-LIKE	coord: 1..137
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 7..104 e-value: 3.0E-39 score: 133.6
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 6..107 score: 25.737089

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0016493.1	IVF0016493.1	mRNA