IVF0016488 (gene) Melon (IVF77) v1

Overview
NameIVF0016488
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr06: 538452 .. 540034 (-)
RNA-Seq ExpressionIVF0016488
SyntenyIVF0016488
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGAAGTCGCGATTTCTTCGACGACGGAGCAAAAAATATCGACGGCTGCTCCGGCGACGAATGGTGGAGCCCGCCGCTGACTGTGATAGATTGGATACAATGAAATTGAAAGGACAGATGGTATGTTTTGTTTAGGGATGGTTCTTAAAAATTTTAGGGTTAAAAATCTGTTCAATTATTACTAACCCTTATCCCGATTTGTCCATTAGTTTGAAAAAAAGCTTCACGATCTTTACAATTAATAGTATGTGATGAAATGAACGGCTAATATGCTGAACACATCGATGAATAGTATTGTTTCAATTTTTATCTTTAGCTACGAAAATGTAAATAGGAGTTGCATTTATTAATGGATTTAGGAATCCCATTCCCAGATAACTTGAACAGCTCGACGAAATAGCTATGAAATTGTTTACTGACGCAAAAATTCTGTCGTATGTAGGTAGGCATTATTTTATATAAAACCCGAGAGCTCACCATGTGGACAGAAATGAAGTTTGTTCAACTTTTTGTTTCCTCTCAATTACTGTGAGAACCTTCATAATATCCATTTTTTGATTTTATTCCTATTCGTTTTCGAACAGAAAGAGCAAGATTAGATCTCTTCTTTTTTGGATCCAGATGCAAACTTTTTTTCTGTAAGTTCTTTTAAGCTTTCACTAAGGAGGTTGCAAAAGTTGATTCATCTTTATAGTTTTTGATGTTCTGCTTCCAATGGTAGTGTATCAATTCCAGTCCATTTTTACACACTTGCCTCTTTTGATGTTGGGCCCCTCTTAATGTTTTGTCTTTTAAACTTGAATTTGTTAAACTTCTCAATCTGGGATGTATTGTATTGGTTGTACTGGAGGTTTTGAAGTTCCATTTTTAAGCCATGAGAGCTTGGAGCCGCCCTTTTCTGAAGTATTTGAAAAAACCGCATTTACTTTTTGTAATTTAATCTAACTTTGCTACCTTTAATTTGGTTCCCATCTCTGATTCTTATTGGTCAATGAATTTCGTATTTCCACTATTATTCTTTGAAAATTTGGATTCTGAAATCCATGGCAATGGCTACTTAGAAACTAATGTCACTACCCACATACAATCCAGTTGGTAATCTGTTTGAGAAGTGGGTGAAAAAGCAGAGTTTCTAGTACTGTTTGATACCATGTTCTTTTCTATATAATTGTATGAGTCCTACTTCTAAAAGTTCTAGCTATTAGATTAATATTCATTCCTAATATATTGCTTGAACTTTTTCTAAATTAATGTTACATGGCAAGTGGACTTCTTATCTTCGAAGTTAAAATATAGAAGAAATGGATACAAGTTGGCTCAATCAACATTTATCTCTTAGAGTTTCGCTTTTAGAAAGTTAGATGGTTCATATATAAATTCTTCACTGATGGTTTATGTTCAGAAATTTTGTCATCGTTTCAAGCTAAATAGCAGGTTCCTTGTAGTACTGTTTTTTCTTTCCTTGTCTCCCTTATCCTTGCATTCTATTATTTTGGTTATAGTTTATTTTTGTTTATATGACTCTATTTAAGATATTTAAACTAATCTTTCTTCTCAGATTGGCTTGGATGAGTAGGTGA

mRNA sequence

ATGAGGAAGTCGCGATTTCTTCGACGACGGAGCAAAAAATATCGACGGCTGCTCCGGCGACGAATGGTGGAGCCCGCCGCTGACTGTGATAGATTGGATACAATGAAATTGAAAGGACAGATGCTCGACGAAATAGCTATGAAATTGTTTACTGACGCAAAAATTCTGTCGTATGTAGAAAGAGCAAGATTAGATCTCTTCTTTTTTGGATCCAGATGCAAACTTTTTTTCTGTAAATTGGCTTGGATGAGTAGGTGA

Coding sequence (CDS)

ATGAGGAAGTCGCGATTTCTTCGACGACGGAGCAAAAAATATCGACGGCTGCTCCGGCGACGAATGGTGGAGCCCGCCGCTGACTGTGATAGATTGGATACAATGAAATTGAAAGGACAGATGCTCGACGAAATAGCTATGAAATTGTTTACTGACGCAAAAATTCTGTCGTATGTAGAAAGAGCAAGATTAGATCTCTTCTTTTTTGGATCCAGATGCAAACTTTTTTTCTGTAAATTGGCTTGGATGAGTAGGTGA

Protein sequence

MRKSRFLRRRSKKYRRLLRRRMVEPAADCDRLDTMKLKGQMLDEIAMKLFTDAKILSYVERARLDLFFFGSRCKLFFCKLAWMSR
Homology
[Close]
BLAST of IVF0016488 vs. ExPASy TrEMBL
Match: A0A0A0L8R6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G182790 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 5.8e-29
Identity = 75/84 (89.29%), Postives = 77/84 (91.67%), Query Frame = 0 

Query: 1  MRKSRFLRRRSKKYRRLLRRRMVEPAADCDRLDTMKLKGQMLDEIAMKLFTDAKILSYVE 60
          MRKSRFLRRRSKK+R LLRRR+VEPA DCDRLDTMKL GQMLDEIAMKLFTDAKILSYVE
Sbjct: 1  MRKSRFLRRRSKKHRWLLRRRLVEPAPDCDRLDTMKLIGQMLDEIAMKLFTDAKILSYVE 60

Query: 61 RARLDLFFFGSRCKLFFCKLAWMS 85
          RAR DLFFFGSRCK FF  LAWMS
Sbjct: 61 RARFDLFFFGSRCKQFFL-LAWMS 83

[Close]
BLAST of IVF0016488 vs. NCBI nr
Match: KGN57394.1 (hypothetical protein Csa_010610 [Cucumis sativus])

HSP 1 Score: 134 bits (338), Expect = 4.09e-39
Identity = 75/84 (89.29%), Postives = 77/84 (91.67%), Query Frame = 0 

Query: 1  MRKSRFLRRRSKKYRRLLRRRMVEPAADCDRLDTMKLKGQMLDEIAMKLFTDAKILSYVE 60
          MRKSRFLRRRSKK+R LLRRR+VEPA DCDRLDTMKL GQMLDEIAMKLFTDAKILSYVE
Sbjct: 1  MRKSRFLRRRSKKHRWLLRRRLVEPAPDCDRLDTMKLIGQMLDEIAMKLFTDAKILSYVE 60

Query: 61 RARLDLFFFGSRCKLFFCKLAWMS 84
          RAR DLFFFGSRCK FF  LAWMS
Sbjct: 61 RARFDLFFFGSRCKQFFL-LAWMS 83

The following BLAST results are available for this feature:
BLAST of IVF0016488 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0016488 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L8R65.8e-2989.29Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G182790 PE=4 SV=1[more]
BLAST of IVF0016488 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57394.14.09e-3989.29hypothetical protein Csa_010610 [Cucumis sativus][more]
BLAST of IVF0016488 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0016488.1IVF0016488.1mRNA