IVF0016480 (gene) Melon (IVF77) v1

Overview


Name	IVF0016480
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	UBP1-associated proteins 1C-like isoform X3
Location	chr02: 11813225 .. 11815146 (+)
RNA-Seq Expression	IVF0016480
Synteny	IVF0016480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTTCAGGTTCCGAGCTATAGATAACAAATCGCCGGCCACCGCCGCTTCCACCTCCGATCAACCGATTCAAGGTAACTTAAGCTTAATCCAAATGTTAATCTCTGTTTTACCTTCAGATCACATAAACATTCCTCCAGGCTAGGCTCCATTTCGATTATTCAACCAGTTGCTTATAAAGCTTTTTAATCTAATCACTTCAGATGATTCTCTAAACGAGGAGCTCTGGAAACAACGGATCAAAGAAGAGATAACGATGCGAGAAATAGTGAGACGAAGAATGTTGGAGGCAGAGATAAGGAGAGAGCTCCTTGTGGAACGAGAACTGGCTATTCGAAGAGCTAGGGGCCAGACGGAAGGCTTATTATCGTTTGACAATCAGTTTCTCGTGAGATTTATGAATGAAGGAGTGAATCGCATTCTGGATCCGTCATCGTCTACAGCTTTACTGGCGGTTCCAGGTTCCAATTCCTCGCTTAACTTAAAGGAAGAACCGAAGCCTGAAGAGGATGAAATGAACAAGCTAATCACTCTGGTAAGTTAAGAACCAATACTTTTCCTTATGATTATTTTTCTCCTTCATTTTACCTTTTTTGTTAGTGAATTTTTAGCTCTCCAAGAAAAACAAATAGATTTCTAGCTAACATTTTTTATTTTATTTCTCCTTTTTGGTGGTTAAAACTTTTAAAATATTTATTTTATTTACATACTAAAACTATGAACATATTCGAAAATTGTCCAGGGTTTTTTTGGATATTTTATGTGTTATGTAACTACATATGGAATATGGAATGAAGAATGATGTGATTGACCTTATGTTGTTCATGTATGGAATGGAGTCGTATAAACTTGTTTAAGTCTAAAGATAGTTATATAACAAAATATAAAACGACTTGAAAAATTTCCCATAAAAAAGAATATTTTTTGTATTTGAACATAAATATATTTTCATAGGCTCAAACTAAACTTATTTCACACTAAAATGATGTGATTGACCTTATGTTGTTCATGTCTGCACTTGAAAAAGCGTGTTTATGTATTTATACGGTTTATGCCATAAACTGGAAGAAAATTCAACTTCAAGTCTCTCTACATAGTAAGCTATTGAACTAGCAACATCAAATAAGTATAAACTTAAATTTCTGTCTTTCAAGTTTATATCTAGCTAGTAAATTCGTTTGACTTTTTAATTTATGTCTAATAGATTTCTGATTTTTTTTTATAGAAAGAAAATTAAAGTTATATTTAATAGCATCCTGAATAGCACTCAAGATAGATGCCACCTAATGCACAAATTAAATCTGTTTAGAATCTATTAAACACAAAATCAAAAACTCTAGAAATTCGTTAGATGATACTTGTCAAAATTTGGGACGACGTATTTGAAAGTTCACATGTGGAATGTGGAAACTGCAGGAGAGGCCAGACCCGGGAAAATTTGTAGGGAAGAGGAAAGCAGTGGGAGATCAAGAAGCAGCGGCAGCAATGGGAGGAGGGGGTGAAAGAGATCAACGTCAAACAATAATTCCAACTCCTTGGATCGGTTCAAAGAAATTAGCAAAAGAAGAGTTTGTTTGTAGTATGTGCAATGTTAAGGCCACAAGTGAAATTAGCTTCAATGCACACATAAATGGCAAGAAACACAAGGCCAAAGAGGGCCGTCGCCAAGTACAACAAACAACTCATAAGGAACCCAACCAAGGGGAAGAAGATCTCAAAGAAAAATTAGACCACCCAGTGAAGAACATAGATAAAAATCCAGCCCTTGAGAAGAACAAGAGACTTAAATTCCGGTGTGAAATTTGCAACGTCGGAGTCCCTTGGATGGCTGTTATGGTCTCACATAACAATGGAAGAAAGCATAAGGCTCGCCTTTTGAAACTTTCTCAACAATGCAAATCGGAGGACCAAAAGGACTAG

mRNA sequence

ATGAATTTCAGGTTCCGAGCTATAGATAACAAATCGCCGGCCACCGCCGCTTCCACCTCCGATCAACCGATTCAAGATGATTCTCTAAACGAGGAGCTCTGGAAACAACGGATCAAAGAAGAGATAACGATGCGAGAAATAGTGAGACGAAGAATGTTGGAGGCAGAGATAAGGAGAGAGCTCCTTGTGGAACGAGAACTGGCTATTCGAAGAGCTAGGGGCCAGACGGAAGGCTTATTATCGTTTGACAATCAGTTTCTCGTGAGATTTATGAATGAAGGAGTGAATCGCATTCTGGATCCGTCATCGTCTACAGCTTTACTGGCGGTTCCAGGTTCCAATTCCTCGCTTAACTTAAAGGAAGAACCGAAGCCTGAAGAGGATGAAATGAACAAGCTAATCACTCTGGAGAGGCCAGACCCGGGAAAATTTGTAGGGAAGAGGAAAGCAGTGGGAGATCAAGAAGCAGCGGCAGCAATGGGAGGAGGGGGTGAAAGAGATCAACGTCAAACAATAATTCCAACTCCTTGGATCGGTTCAAAGAAATTAGCAAAAGAAGAGTTTGTTTGTAGTATGTGCAATGTTAAGGCCACAAGTGAAATTAGCTTCAATGCACACATAAATGGCAAGAAACACAAGGCCAAAGAGGGCCGTCGCCAAGTACAACAAACAACTCATAAGGAACCCAACCAAGGGGAAGAAGATCTCAAAGAAAAATTAGACCACCCAGTGAAGAACATAGATAAAAATCCAGCCCTTGAGAAGAACAAGAGACTTAAATTCCGGTGTGAAATTTGCAACGTCGGAGTCCCTTGGATGGCTGTTATGGTCTCACATAACAATGGAAGAAAGCATAAGGCTCGCCTTTTGAAACTTTCTCAACAATGCAAATCGGAGGACCAAAAGGACTAG

Coding sequence (CDS)

ATGAATTTCAGGTTCCGAGCTATAGATAACAAATCGCCGGCCACCGCCGCTTCCACCTCCGATCAACCGATTCAAGATGATTCTCTAAACGAGGAGCTCTGGAAACAACGGATCAAAGAAGAGATAACGATGCGAGAAATAGTGAGACGAAGAATGTTGGAGGCAGAGATAAGGAGAGAGCTCCTTGTGGAACGAGAACTGGCTATTCGAAGAGCTAGGGGCCAGACGGAAGGCTTATTATCGTTTGACAATCAGTTTCTCGTGAGATTTATGAATGAAGGAGTGAATCGCATTCTGGATCCGTCATCGTCTACAGCTTTACTGGCGGTTCCAGGTTCCAATTCCTCGCTTAACTTAAAGGAAGAACCGAAGCCTGAAGAGGATGAAATGAACAAGCTAATCACTCTGGAGAGGCCAGACCCGGGAAAATTTGTAGGGAAGAGGAAAGCAGTGGGAGATCAAGAAGCAGCGGCAGCAATGGGAGGAGGGGGTGAAAGAGATCAACGTCAAACAATAATTCCAACTCCTTGGATCGGTTCAAAGAAATTAGCAAAAGAAGAGTTTGTTTGTAGTATGTGCAATGTTAAGGCCACAAGTGAAATTAGCTTCAATGCACACATAAATGGCAAGAAACACAAGGCCAAAGAGGGCCGTCGCCAAGTACAACAAACAACTCATAAGGAACCCAACCAAGGGGAAGAAGATCTCAAAGAAAAATTAGACCACCCAGTGAAGAACATAGATAAAAATCCAGCCCTTGAGAAGAACAAGAGACTTAAATTCCGGTGTGAAATTTGCAACGTCGGAGTCCCTTGGATGGCTGTTATGGTCTCACATAACAATGGAAGAAAGCATAAGGCTCGCCTTTTGAAACTTTCTCAACAATGCAAATCGGAGGACCAAAAGGACTAG

Protein sequence

MNFRFRAIDNKSPATAASTSDQPIQDDSLNEELWKQRIKEEITMREIVRRRMLEAEIRRELLVERELAIRRARGQTEGLLSFDNQFLVRFMNEGVNRILDPSSSTALLAVPGSNSSLNLKEEPKPEEDEMNKLITLERPDPGKFVGKRKAVGDQEAAAAMGGGGERDQRQTIIPTPWIGSKKLAKEEFVCSMCNVKATSEISFNAHINGKKHKAKEGRRQVQQTTHKEPNQGEEDLKEKLDHPVKNIDKNPALEKNKRLKFRCEICNVGVPWMAVMVSHNNGRKHKARLLKLSQQCKSEDQKD

Homology

[Close]

BLAST of IVF0016480 vs. ExPASy Swiss-Prot
Match: O64571 (UBP1-associated proteins 1C OS=Arabidopsis thaliana OX=3702 GN=UBA1C PE=3 SV=2)

HSP 1 Score: 55.1 bits (131), Expect = 1.6e-06
Identity = 39/120 (32.50%), Postives = 60/120 (50.00%), Query Frame = 0


Query: 190 CSMCNVKATSEISFNAHINGKKHKAKEGRRQVQQTTHKEPNQGEEDLKEKLDHPVKNIDK 249
           CS+C++ ATSE +  AH NGKKH+ K  R   +Q   +       D   K D+  + I+ 
Sbjct: 156 CSLCDINATSEQTLLAHANGKKHRVKVERFDAEQQKRQSTQHSTVD---KKDYSKQQIEV 215

Query: 250 NPALEKNKRLKFRCEICNVGVPWMAVMVSHNNGRKHK--ARLLKLSQQCKSE----DQKD 304
           +  +  +    + C +CNV       ++SH NGRKH+    L   +QQ + E    D+KD
Sbjct: 216 DINVGLSNCYPWFCSLCNVKATCQQNLLSHANGRKHRENVELFDATQQQQLEKTTVDKKD 272

[Close]

BLAST of IVF0016480 vs. ExPASy TrEMBL
Match: A0A5D3B800 (UBP1-associated proteins 1C-like isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold271G00520 PE=4 SV=1)

HSP 1 Score: 587.8 bits (1514), Expect = 2.6e-164
Identity = 303/303 (100.00%), Postives = 303/303 (100.00%), Query Frame = 0


Query: 1   MNFRFRAIDNKSPATAASTSDQPIQDDSLNEELWKQRIKEEITMREIVRRRMLEAEIRRE 60
           MNFRFRAIDNKSPATAASTSDQPIQDDSLNEELWKQRIKEEITMREIVRRRMLEAEIRRE
Sbjct: 1   MNFRFRAIDNKSPATAASTSDQPIQDDSLNEELWKQRIKEEITMREIVRRRMLEAEIRRE 60

Query: 61  LLVERELAIRRARGQTEGLLSFDNQFLVRFMNEGVNRILDPSSSTALLAVPGSNSSLNLK 120
           LLVERELAIRRARGQTEGLLSFDNQFLVRFMNEGVNRILDPSSSTALLAVPGSNSSLNLK
Sbjct: 61  LLVERELAIRRARGQTEGLLSFDNQFLVRFMNEGVNRILDPSSSTALLAVPGSNSSLNLK 120

Query: 121 EEPKPEEDEMNKLITLERPDPGKFVGKRKAVGDQEAAAAMGGGGERDQRQTIIPTPWIGS 180
           EEPKPEEDEMNKLITLERPDPGKFVGKRKAVGDQEAAAAMGGGGERDQRQTIIPTPWIGS
Sbjct: 121 EEPKPEEDEMNKLITLERPDPGKFVGKRKAVGDQEAAAAMGGGGERDQRQTIIPTPWIGS 180

Query: 181 KKLAKEEFVCSMCNVKATSEISFNAHINGKKHKAKEGRRQVQQTTHKEPNQGEEDLKEKL 240
           KKLAKEEFVCSMCNVKATSEISFNAHINGKKHKAKEGRRQVQQTTHKEPNQGEEDLKEKL
Sbjct: 181 KKLAKEEFVCSMCNVKATSEISFNAHINGKKHKAKEGRRQVQQTTHKEPNQGEEDLKEKL 240

Query: 241 DHPVKNIDKNPALEKNKRLKFRCEICNVGVPWMAVMVSHNNGRKHKARLLKLSQQCKSED 300
           DHPVKNIDKNPALEKNKRLKFRCEICNVGVPWMAVMVSHNNGRKHKARLLKLSQQCKSED
Sbjct: 241 DHPVKNIDKNPALEKNKRLKFRCEICNVGVPWMAVMVSHNNGRKHKARLLKLSQQCKSED 300

Query: 301 QKD 304
           QKD
Sbjct: 301 QKD 303

[Close]

BLAST of IVF0016480 vs. ExPASy TrEMBL
Match: A0A1S3B9S7 (uncharacterized protein LOC103487343 OS=Cucumis melo OX=3656 GN=LOC103487343 PE=4 SV=1)

HSP 1 Score: 587.8 bits (1514), Expect = 2.6e-164
Identity = 303/303 (100.00%), Postives = 303/303 (100.00%), Query Frame = 0


Query: 1   MNFRFRAIDNKSPATAASTSDQPIQDDSLNEELWKQRIKEEITMREIVRRRMLEAEIRRE 60
           MNFRFRAIDNKSPATAASTSDQPIQDDSLNEELWKQRIKEEITMREIVRRRMLEAEIRRE
Sbjct: 1   MNFRFRAIDNKSPATAASTSDQPIQDDSLNEELWKQRIKEEITMREIVRRRMLEAEIRRE 60

Query: 61  LLVERELAIRRARGQTEGLLSFDNQFLVRFMNEGVNRILDPSSSTALLAVPGSNSSLNLK 120
           LLVERELAIRRARGQTEGLLSFDNQFLVRFMNEGVNRILDPSSSTALLAVPGSNSSLNLK
Sbjct: 61  LLVERELAIRRARGQTEGLLSFDNQFLVRFMNEGVNRILDPSSSTALLAVPGSNSSLNLK 120

Query: 121 EEPKPEEDEMNKLITLERPDPGKFVGKRKAVGDQEAAAAMGGGGERDQRQTIIPTPWIGS 180
           EEPKPEEDEMNKLITLERPDPGKFVGKRKAVGDQEAAAAMGGGGERDQRQTIIPTPWIGS
Sbjct: 121 EEPKPEEDEMNKLITLERPDPGKFVGKRKAVGDQEAAAAMGGGGERDQRQTIIPTPWIGS 180

Query: 181 KKLAKEEFVCSMCNVKATSEISFNAHINGKKHKAKEGRRQVQQTTHKEPNQGEEDLKEKL 240
           KKLAKEEFVCSMCNVKATSEISFNAHINGKKHKAKEGRRQVQQTTHKEPNQGEEDLKEKL
Sbjct: 181 KKLAKEEFVCSMCNVKATSEISFNAHINGKKHKAKEGRRQVQQTTHKEPNQGEEDLKEKL 240

Query: 241 DHPVKNIDKNPALEKNKRLKFRCEICNVGVPWMAVMVSHNNGRKHKARLLKLSQQCKSED 300
           DHPVKNIDKNPALEKNKRLKFRCEICNVGVPWMAVMVSHNNGRKHKARLLKLSQQCKSED
Sbjct: 241 DHPVKNIDKNPALEKNKRLKFRCEICNVGVPWMAVMVSHNNGRKHKARLLKLSQQCKSED 300

Query: 301 QKD 304
           QKD
Sbjct: 301 QKD 303

[Close]

BLAST of IVF0016480 vs. ExPASy TrEMBL
Match: A0A5N6RXK0 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_020810 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.8e-24
Identity = 114/390 (29.23%), Postives = 170/390 (43.59%), Query Frame = 0


Query: 1   MNFRFRAIDNK------SPATAASTSDQPIQD-----------DSLNEELWKQRIKEEIT 60
           M F+FRA+D +       P++ +  +D  ++            +++  EL K RI+EE+ 
Sbjct: 1   MEFKFRAVDERPPICPNPPSSISYFTDHALRGPGPMRNPGDVREAIEWELEKDRIREELI 60

Query: 61  MREIVRRRMLEAEIRRELLVERELAIRR--ARGQTEGLLSFDNQFLVRFMNEGVNRILDP 120
           + +I RRR+LEAE+R  L++ERE+A+RR  A    EG LS + +  +RF +  +  ++ P
Sbjct: 61  VADIARRRVLEAEVRTALMIEREMAVRRLAATATPEG-LSLEERLTMRF-DPRLPPLMHP 120

Query: 121 SSSTALLAVPGSNSSLN--------LKEEP----KPEEDEMNKLITLERPDPGKFVGKRK 180
             S    A PG   +++        L+  P     P E   +KLI L +PDP     KRK
Sbjct: 121 FES---FAFPGCGGAIDKFPMMPRLLEAMPLDIKPPREINKDKLIVLAKPDPNLSGTKRK 180

Query: 181 AVGDQEAAAAMGGGGERDQRQTIIPTPWIGSKKLAKEEFVCSMCNVKATSEISFNAHING 240
           AV     +               I  P  G KK  KEE+ C++C V ATSE  FN H+ G
Sbjct: 181 AVTPPAGST--------------IEVPPFGLKKRPKEEWSCALCQVSATSERGFNEHLQG 240

Query: 241 KKHKAKEGRRQVQ--------------------------------------QTTHK---- 296
           KKHKAKE R + Q                                      ++ H+    
Sbjct: 241 KKHKAKEARLRAQTMGKIGNTTPLPKETTKPSKLTDATDIGSSGLQARVEGESLHQNKTG 300

[Close]

BLAST of IVF0016480 vs. ExPASy TrEMBL
Match: A0A6J1EJN4 (uncharacterized protein LOC111433915 OS=Cucurbita moschata OX=3662 GN=LOC111433915 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 4.0e-24
Identity = 73/121 (60.33%), Postives = 91/121 (75.21%), Query Frame = 0


Query: 1   MNFRFRAIDNKSPATAAS---TSDQPIQDDSLNEELWKQRIKEEITMREIVRRRMLEAEI 60
           ++FR RA+DNK    A+S   +SD P++DDS N EL KQRIKEEIT RE   RRMLEAEI
Sbjct: 55  LDFRVRAVDNKPLLAASSSECSSDHPLRDDSPNAELVKQRIKEEITNRETASRRMLEAEI 114

Query: 61  RRELLVERELAIRRARGQTEGLLSFDNQFLVRFMNEGVNRILDPSSSTALLAVPGSNSSL 119
           RREL++E+EL+I RA G+TEG L+FD  F +R ++  +N I+D SSS  LLAVPGS SSL
Sbjct: 115 RRELIIEQELSILRATGRTEG-LAFDEHFAMRMLDLRLNHIVDQSSSRGLLAVPGSCSSL 174

[Close]

BLAST of IVF0016480 vs. ExPASy TrEMBL
Match: A0A6P5XKD2 (uncharacterized protein LOC111284446 OS=Durio zibethinus OX=66656 GN=LOC111284446 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 9.0e-24
Identity = 116/366 (31.69%), Postives = 163/366 (44.54%), Query Frame = 0


Query: 1   MNFRFRAIDNKSP-------ATAASTSDQPI---------QDDSLNEELWKQRIKEEITM 60
           M F+FRA+D + P       ++   +S Q I         + DS+  EL K +I+EEI  
Sbjct: 119 MEFKFRAVDKRQPNYFLPSSSSFNPSSGQGIRPNPNFNRNRPDSIQWELEKAQIREEIIA 178

Query: 61  REIVRRRMLEAEIRRELLVERELAI-RRARGQTEGLLSFDNQFLVR------FMNEGVN- 120
            E+ RRR LEAE+RREL+ ERE+A   RAR   E  L F++   VR      FM+   N 
Sbjct: 179 SEMARRRALEAEVRRELMAEREMAAWHRAR---ETSLPFEHMLTVRLDPRLPFMHHHFNN 238

Query: 121 -RILDPSSSTALL------AVPGSNSSLNLKEEPKPEEDEMNKLITLERPDPGKFVGKRK 180
                P  S  L        +P   + +   E     E   NKLI L +PDP + VG ++
Sbjct: 239 HHRWRPEQSFNLFPPPPLPMMPPQLTEILDSEVKDTSEGNKNKLIILAKPDPNRVVGAKR 298

Query: 181 AVGDQEAAAAMGGGGERDQRQTIIPTPWIGSKKLAKEEFVCSMCNVKATSEISFNAHING 240
                       G GE       +P P I  KK+  EE+ C++C V ATSE     H+ G
Sbjct: 299 ------KTPPPAGTGE-------LPLPLISLKKIPNEEWSCAICQVSATSEKGLIEHLQG 358

Query: 241 KKHKAKEGRRQVQQ----------TTHKEPN---------------QGEEDLKEKLD--- 295
           +KHKAKE R + ++          T  K+P                +  E LK K D   
Sbjct: 359 RKHKAKEARLRAERMEKSSNTNTTTLPKKPRLPQLNKNMDGSDQKLEDREKLKNKKDELL 418

[Close]

BLAST of IVF0016480 vs. NCBI nr
Match: XP_008443847.1 (PREDICTED: uncharacterized protein LOC103487343 [Cucumis melo] >KAA0035096.1 UBP1-associated proteins 1C-like isoform X3 [Cucumis melo var. makuwa] >TYJ95982.1 UBP1-associated proteins 1C-like isoform X3 [Cucumis melo var. makuwa])

HSP 1 Score: 586 bits (1511), Expect = 8.41e-211
Identity = 303/303 (100.00%), Postives = 303/303 (100.00%), Query Frame = 0


Query: 1   MNFRFRAIDNKSPATAASTSDQPIQDDSLNEELWKQRIKEEITMREIVRRRMLEAEIRRE 60
           MNFRFRAIDNKSPATAASTSDQPIQDDSLNEELWKQRIKEEITMREIVRRRMLEAEIRRE
Sbjct: 1   MNFRFRAIDNKSPATAASTSDQPIQDDSLNEELWKQRIKEEITMREIVRRRMLEAEIRRE 60

Query: 61  LLVERELAIRRARGQTEGLLSFDNQFLVRFMNEGVNRILDPSSSTALLAVPGSNSSLNLK 120
           LLVERELAIRRARGQTEGLLSFDNQFLVRFMNEGVNRILDPSSSTALLAVPGSNSSLNLK
Sbjct: 61  LLVERELAIRRARGQTEGLLSFDNQFLVRFMNEGVNRILDPSSSTALLAVPGSNSSLNLK 120

Query: 121 EEPKPEEDEMNKLITLERPDPGKFVGKRKAVGDQEAAAAMGGGGERDQRQTIIPTPWIGS 180
           EEPKPEEDEMNKLITLERPDPGKFVGKRKAVGDQEAAAAMGGGGERDQRQTIIPTPWIGS
Sbjct: 121 EEPKPEEDEMNKLITLERPDPGKFVGKRKAVGDQEAAAAMGGGGERDQRQTIIPTPWIGS 180

Query: 181 KKLAKEEFVCSMCNVKATSEISFNAHINGKKHKAKEGRRQVQQTTHKEPNQGEEDLKEKL 240
           KKLAKEEFVCSMCNVKATSEISFNAHINGKKHKAKEGRRQVQQTTHKEPNQGEEDLKEKL
Sbjct: 181 KKLAKEEFVCSMCNVKATSEISFNAHINGKKHKAKEGRRQVQQTTHKEPNQGEEDLKEKL 240

Query: 241 DHPVKNIDKNPALEKNKRLKFRCEICNVGVPWMAVMVSHNNGRKHKARLLKLSQQCKSED 300
           DHPVKNIDKNPALEKNKRLKFRCEICNVGVPWMAVMVSHNNGRKHKARLLKLSQQCKSED
Sbjct: 241 DHPVKNIDKNPALEKNKRLKFRCEICNVGVPWMAVMVSHNNGRKHKARLLKLSQQCKSED 300

Query: 301 QKD 303
           QKD
Sbjct: 301 QKD 303

[Close]

BLAST of IVF0016480 vs. NCBI nr
Match: XP_038880353.1 (zinc finger protein 385B [Benincasa hispida])

HSP 1 Score: 297 bits (761), Expect = 1.03e-96
Identity = 190/317 (59.94%), Postives = 222/317 (70.03%), Query Frame = 0


Query: 1   MNFRFRAIDNKSPATAASTS----DQPIQDDSLNEELWKQRIKEEITMREIVRRRMLEAE 60
           M+FRFRA DNKSPATA STS    DQ +QD SLN EL KQR+K+EI +REI  RRMLEAE
Sbjct: 1   MDFRFRANDNKSPATATSTSVRSFDQLLQD-SLNAELLKQRMKDEIMIREIASRRMLEAE 60

Query: 61  IRRELLVERELAIRRARGQTEGLLSFDNQFLVRFMNE--GVNRILDPSSSTALLAVPGSN 120
           IRREL++E+ELA RR  G+TEGLL FD+QF VR +++    + I+DP     LL VPGS+
Sbjct: 61  IRRELIIEQELAKRRVEGRTEGLL-FDDQFSVRLLDQIRMNHNIVDPFRG--LLTVPGSS 120

Query: 121 SSL--------NLKEEPKPEEDEMNKLITLERPDPGKFVGKRKAVGDQEAAAAMGGGGER 180
           SS            EEPKP +D+ NKLI L +PDP KF GKRKA G  EAA       + 
Sbjct: 121 SSPLPVCPVPNPQNEEPKPFDDKKNKLIVLPKPDPAKFEGKRKAEG--EAAEV-----DT 180

Query: 181 DQRQTIIPTPWIGSKKLAKEEFVCSMCNVKATSEISFNAHINGKKHKAKEGRRQVQQTTH 240
           DQ+    PT WI SKKLAKEEFVCSMCNV+ TSEISFNAH+ GKKH AKEGR    Q   
Sbjct: 181 DQK---TPTHWISSKKLAKEEFVCSMCNVQVTSEISFNAHLKGKKHMAKEGRSLQTQ--- 240

Query: 241 KEPNQGEEDLKEKLDHPVKNIDKNPALEKNKRLKFRCEICNVGVPWMAVMVSHNNGRKHK 300
            EP+  E DLKEKLD+  K+ DK  AL+     KF C+IC +G P MA+MVSHNNG+KHK
Sbjct: 241 -EPSPAE-DLKEKLDNQKKDADKKSALKNKVHFKFWCKICEIGTPCMAIMVSHNNGKKHK 298

Query: 301 ARLLKLSQQCKSEDQKD 303
           ARLLKLSQQ K +DQKD
Sbjct: 301 ARLLKLSQQSKLDDQKD 298

[Close]

BLAST of IVF0016480 vs. NCBI nr
Match: XP_022926958.1 (uncharacterized protein LOC111433915 [Cucurbita moschata])

HSP 1 Score: 120 bits (302), Expect = 1.98e-29
Identity = 75/122 (61.48%), Postives = 92/122 (75.41%), Query Frame = 0


Query: 1   MNFRFRAIDNKSPATAASTS----DQPIQDDSLNEELWKQRIKEEITMREIVRRRMLEAE 60
           ++FR RA+DNK P  AAS+S    D P++DDS N EL KQRIKEEIT RE   RRMLEAE
Sbjct: 55  LDFRVRAVDNK-PLLAASSSECSSDHPLRDDSPNAELVKQRIKEEITNRETASRRMLEAE 114

Query: 61  IRRELLVERELAIRRARGQTEGLLSFDNQFLVRFMNEGVNRILDPSSSTALLAVPGSNSS 118
           IRREL++E+EL+I RA G+TEGL +FD  F +R ++  +N I+D SSS  LLAVPGS SS
Sbjct: 115 IRRELIIEQELSILRATGRTEGL-AFDEHFAMRMLDLRLNHIVDQSSSRGLLAVPGSCSS 174

[Close]

BLAST of IVF0016480 vs. NCBI nr
Match: XP_021647002.1 (uncharacterized protein LOC110640116 [Hevea brasiliensis])

HSP 1 Score: 122 bits (306), Expect = 1.47e-27
Identity = 120/394 (30.46%), Postives = 170/394 (43.15%), Query Frame = 0


Query: 1   MNFRFRAIDNKSPATAASTSD----------------------QPIQDDSLNEELWKQRI 60
           M F+FRA+D +SPA   S+S                       + +++ +L  E+ KQRI
Sbjct: 21  MEFKFRAVDGRSPAQLPSSSTIGFFSAQAFGANYPNIDPRQNPELMRNQTLQCEIEKQRI 80

Query: 61  KEEITMREIVRRRMLEAEIRRELLVERELAIRRARGQTEGLLSFDNQFLVR--------F 120
           +EEI  +EI RRR+LEAE+RREL++ERE+A+R   G+  G  +F  +  +R        F
Sbjct: 81  REEIIAKEIARRRVLEAEVRRELMMEREMAMRVGDGEGGGS-TFGERPTMRLEPRPWFPF 140

Query: 121 MNEGVNRILDPSSSTA-------LLAVPGSNSSLNLKEEPKPEEDEMNKLITLERPDPGK 180
           MN+  NR L+  S+          L  P  + +L         ED  +KLI L +PDP  
Sbjct: 141 MNQFDNRRLEELSAFHGRGVFDWWLQSPRVSEALVAPVIKPALEDNKDKLIVLAKPDPNH 200

Query: 181 FVGKRKAVGDQEAAAAMGGGGERDQRQTIIPTPWIGSKKLAKEEFVCSMCNVKATSEISF 240
              KRKA    E  AA                P+ G KK  KE++ C++C V ATSE   
Sbjct: 201 CGAKRKAATPPEGGAAG--------------LPYTGLKKKLKEDWSCALCQVSATSERGL 260

Query: 241 NAHINGKKHKAKEGRRQVQQTTHKEPN--------------------------------- 294
             H+ GKKHKAKE R +  +   K P                                  
Sbjct: 261 IEHLRGKKHKAKEARLRANKMA-KNPRSMPLPKNSTKPAKLATCTASLKLEAKVEVESLQ 320

[Close]

BLAST of IVF0016480 vs. NCBI nr
Match: KAF9852912.1 (hypothetical protein H0E87_016631 [Populus deltoides])

HSP 1 Score: 122 bits (305), Expect = 1.92e-27
Identity = 117/393 (29.77%), Postives = 171/393 (43.51%), Query Frame = 0


Query: 1   MNFRFRAIDNKSPATAASTSD----------------------QPIQDDSLNEELWKQRI 60
           M F+FRA DN+ P   + +S                       +P++++ +   + K+RI
Sbjct: 1   MEFKFRAGDNRPPVCFSPSSSIGYFYEQALRASYPNADPRQIPEPMRNELILRRIEKERI 60

Query: 61  KEEITMREIVRRRMLEAEIRRELLVERELAIRRARGQTEGLLSFDNQFLVRFMNEG---- 120
           +EEI  +E+  RR LEAE+RREL+VERE+A+R  RG     +SF+ +  ++F +      
Sbjct: 61  REEIIAQEMAWRRELEAEVRRELMVEREMAMRGGRG-----MSFEERLTMQFDSRKPLLP 120

Query: 121 ---VNRILDPSSSTALLAVPGSNSSLNLKEEPKPEEDEM--------NKLITLERPDPGK 180
              VN+  D S     LA  G   S  L   P+  E EM        +K+I L++PDP  
Sbjct: 121 GPFVNQF-DCSWPEDRLAFHGHGVSYMLPPVPRLPESEMKPSTENNKDKVIVLKKPDPNL 180

Query: 181 FVGKRKAVGDQEAAAAMGGGGERDQRQTIIPTPWIGSKKLAKEEFVCSMCNVKATSEISF 240
              KRKAV       A  G GE          P+ G KK  KEE+ C++C V ATSE   
Sbjct: 181 CGAKRKAV-----TPAAEGVGE---------LPFAGIKKKPKEEWSCALCQVSATSERGL 240

Query: 241 NAHINGKKHKAKEGRRQVQ-------------QTTH------------------------ 294
           N H+ G++HKAKE   + Q             +TT                         
Sbjct: 241 NEHLQGRRHKAKEAGLRAQKMARNPNKASLPKETTKTAKVTIPTAGLEMEAKIEDESLQL 300

[Close]

BLAST of IVF0016480 vs. TAIR 10
Match: AT2G24030.1 (zinc ion binding;nucleic acid binding )

HSP 1 Score: 56.6 bits (135), Expect = 4.0e-08
Identity = 90/344 (26.16%), Postives = 136/344 (39.53%), Query Frame = 0


Query: 1   MNFRFRAIDNKSPATAASTSDQPI-----------------QDDSLNE----ELWKQRIK 60
           M FR+RAIDN  P  A  T+  P                   +D + E    E+ K++I+
Sbjct: 1   MEFRYRAIDNNRPPPATDTTPSPSLKPNFPFLSERSMPGQQSEDQVREAIKREIEKEQIR 60

Query: 61  EEITMREIVRRRMLEAEIRRELLVERELAIRRA----RGQTEGLLSFDNQFLVRFMNEG- 120
           +EI + E  R+R L AE+ +E+ +ERE+AIRR         E L  + NQ  +   N+  
Sbjct: 61  QEIIIAEAARKRELIAEVLQEMAIEREMAIRRVSDTEMSLEEKLTMWINQRKLPNQNQNQ 120

Query: 121 -----------VNRILDPSSSTALLAVPGSN--SSLNLKEEPKPEEDEMNK--LITLERP 180
                      ++ +++  S  +LL  P         + E       E NK  LI L R 
Sbjct: 121 FNNFFRQKYSYIDSLINTGSYNSLLTSPMMQLPQLQQMSEATGTSMLESNKENLIVLNRA 180

Query: 181 DPGKFVGKRKAVGD------QEAAAAMGGG---GERDQRQTIIPTPWIGSKKLAKEEFVC 240
           D      K  +VG       Q+   A G       ++Q   +     +G K+ A++    
Sbjct: 181 DIIGAKPKADSVGTMQLPKLQQMPEATGTSVLESNKEQFIVLARADPVGEKRKAED---- 240

Query: 241 SMCNVKATSEISFNAHINGKKHKAKEGRRQVQQTTHKEPNQGEEDLKEKLDHPVKNIDKN 295
                    +   N  +  K+ KAKE   +       E    +     KL    K   K 
Sbjct: 241 --------IQTGLNEDLQVKRPKAKESEAKAMSLETGEIVSSKVPCSGKLGSGKKAEGK- 300

[Close]

BLAST of IVF0016480 vs. TAIR 10
Match: AT5G61190.1 (putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain )

HSP 1 Score: 55.8 bits (133), Expect = 6.8e-08
Identity = 47/154 (30.52%), Postives = 63/154 (40.91%), Query Frame = 0


Query: 178 IGSKKLAKEEFVCSMCNVKATSEISFNAHINGKKH------------------------- 237
           I S+  A  EFVC MCNV   S+I FN+H+ GKKH                         
Sbjct: 358 IESRAQANAEFVCLMCNVVCQSQIVFNSHLRGKKHANMLSQSEALIVSTKLQEKGVGEKE 417

Query: 238 ----KAKEGRRQVQQTTHKEPNQGEEDLKEKLDHPVKNIDKNPALEKNKRLKFRCEICNV 297
                  E + Q Q+   K+     + L EK D  VK   K     +N   K+ C +CNV
Sbjct: 418 QPSETVAELQLQSQKAQEKQVLVDSKKLPEKGDE-VKGQPKEMTALRNASAKYICRMCNV 477

Query: 298 GVPWMAVMVSHNNGRKHKARLLKLSQQCKSEDQK 303
           G     V  +H  G+KH A L +   Q   + +K
Sbjct: 478 GCHSPIVFETHLRGQKHAANLNQSKDQALIDSKK 510

[Close]

BLAST of IVF0016480 vs. TAIR 10
Match: AT2G19380.1 (RNA recognition motif (RRM)-containing protein )

HSP 1 Score: 55.1 bits (131), Expect = 1.2e-07
Identity = 39/120 (32.50%), Postives = 60/120 (50.00%), Query Frame = 0


Query: 190 CSMCNVKATSEISFNAHINGKKHKAKEGRRQVQQTTHKEPNQGEEDLKEKLDHPVKNIDK 249
           CS+C++ ATSE +  AH NGKKH+ K  R   +Q   +       D   K D+  + I+ 
Sbjct: 156 CSLCDINATSEQTLLAHANGKKHRVKVERFDAEQQKRQSTQHSTVD---KKDYSKQQIEV 215

Query: 250 NPALEKNKRLKFRCEICNVGVPWMAVMVSHNNGRKHK--ARLLKLSQQCKSE----DQKD 304
           +  +  +    + C +CNV       ++SH NGRKH+    L   +QQ + E    D+KD
Sbjct: 216 DINVGLSNCYPWFCSLCNVKATCQQNLLSHANGRKHRENVELFDATQQQQLEKTTVDKKD 272

The following BLAST results are available for this feature:

BLAST of IVF0016480 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O64571	1.6e-06	32.50	UBP1-associated proteins 1C OS=Arabidopsis thaliana OX=3702 GN=UBA1C PE=3 SV=2	[more]

BLAST of IVF0016480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3B800	2.6e-164	100.00	UBP1-associated proteins 1C-like isoform X3 OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3B9S7	2.6e-164	100.00	uncharacterized protein LOC103487343 OS=Cucumis melo OX=3656 GN=LOC103487343 PE=...	[more]
A0A5N6RXK0	1.8e-24	29.23	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_020810 PE=4 SV=1	[more]
A0A6J1EJN4	4.0e-24	60.33	uncharacterized protein LOC111433915 OS=Cucurbita moschata OX=3662 GN=LOC1114339...	[more]
A0A6P5XKD2	9.0e-24	31.69	uncharacterized protein LOC111284446 OS=Durio zibethinus OX=66656 GN=LOC11128444...	[more]

BLAST of IVF0016480 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008443847.1	8.41e-211	100.00	PREDICTED: uncharacterized protein LOC103487343 [Cucumis melo] >KAA0035096.1 UBP...	[more]
XP_038880353.1	1.03e-96	59.94	zinc finger protein 385B [Benincasa hispida]	[more]
XP_022926958.1	1.98e-29	61.48	uncharacterized protein LOC111433915 [Cucurbita moschata]	[more]
XP_021647002.1	1.47e-27	30.46	uncharacterized protein LOC110640116 [Hevea brasiliensis]	[more]
KAF9852912.1	1.92e-27	29.77	hypothetical protein H0E87_016631 [Populus deltoides]	[more]

BLAST of IVF0016480 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G24030.1	4.0e-08	26.16	zinc ion binding;nucleic acid binding	[more]
AT5G61190.1	6.8e-08	30.52	putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain	[more]
AT2G19380.1	1.2e-07	32.50	RNA recognition motif (RRM)-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003604	Matrin/U1-C-like, C2H2-type zinc finger	SMART	SM00451	ZnF_U1_5	coord: 185..219 e-value: 3.5E-8 score: 43.2 coord: 258..292 e-value: 0.47 score: 14.8
IPR013087	Zinc finger C2H2-type	SMART	SM00355	c2h2final6	coord: 261..285 e-value: 13.0 score: 12.2 coord: 188..212 e-value: 0.51 score: 19.4
None	No IPR available	GENE3D	3.30.160.60	Classic Zinc Finger	coord: 259..303 e-value: 6.8E-7 score: 31.2
None	No IPR available	PFAM	PF12874	zf-met	coord: 261..285 e-value: 0.004 score: 17.5 coord: 188..212 e-value: 5.3E-8 score: 33.0
None	No IPR available	GENE3D	3.30.160.60	Classic Zinc Finger	coord: 177..219 e-value: 4.4E-10 score: 40.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 208..243
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 218..243
None	No IPR available	PANTHER	PTHR47487:SF8	OS06G0651300 PROTEIN	coord: 1..299
None	No IPR available	PANTHER	PTHR47487	OS06G0651300 PROTEIN-RELATED	coord: 1..299
IPR036236	Zinc finger C2H2 superfamily	SUPERFAMILY	57667	beta-beta-alpha zinc fingers	coord: 182..217
IPR036236	Zinc finger C2H2 superfamily	SUPERFAMILY	57667	beta-beta-alpha zinc fingers	coord: 252..293

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0016480.1	IVF0016480.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding