IVF0016463 (gene) Melon (IVF77) v1

Overview


Name	IVF0016463
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Reverse transcriptase
Location	chr02: 9433910 .. 9434430 (+)
RNA-Seq Expression	IVF0016463
Synteny	IVF0016463

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGAAGATGAATTACGAGCCATTAAGGAGTGGAGAGCCCCCACTTCTGTGACAGAGTTATGTTCCTTCCTTGGATTGACTAATTACTATCGTTAGTTCATTAAAGAATTCTCAAGAAGGGTTGCACCATTGATCGAGTTGTTGAAGAAAGGTACGACTTGAAGATGGCCAGGCGAATGTCAAACTACTTTGACAATTTAAAGGTCACAATGACGAGGGGTTCTATCTTCGGATTAGTGGACATATCTAAGTTGTTTATAGTTGAGACTGATGTGTCAAACTTTGCCCTTGGAGGTGTCCTTACCCAAGAGGGTCATCCAATAGCTTACGAGAGTCATAAGCTTAATAGCGCTGAGAGGAGGTACACTGTCTCCAAGAAGGAAATGCTTGTCGTGGTCCATTATCTGAGGGCCTTGAGGCAATATTTACTGAGATCACCATTCGTGGTGAAATCTGACAACATCGTCATCAGCCACTTCTTTAGCCAACCTAAATTGACGTCTAAACAAGCGAGATGA

mRNA sequence

ATGGATGAAGATGAATTACGAGCCATTAAGGAGTGGAGAGCCCCCACTTCTGTGACAGAGTTATGTTCCTTCCTTGGATTGACTAATTACTATCAAAGGTACGACTTGAAGATGGCCAGGCGAATGTCAAACTACTTTGACAATTTAAAGGTCACAATGACGAGGGGTTCTATCTTCGGATTAGTGGACATATCTAAGTTGTTTATAGTTGAGACTGATGTGTCAAACTTTGCCCTTGGAGGTGTCCTTACCCAAGAGGGTCATCCAATAGCTTACGAGAGTCATAAGCTTAATAGCGCTGAGAGGAGGTACACTGTCTCCAAGAAGGAAATGCTTGTCGTGGTCCATTATCTGAGGGCCTTGAGGCAATATTTACTGAGATCACCATTCGTGGTGAAATCTGACAACATCGTCATCAGCCACTTCTTTAGCCAACCTAAATTGACGTCTAAACAAGCGAGATGA

Coding sequence (CDS)

ATGGATGAAGATGAATTACGAGCCATTAAGGAGTGGAGAGCCCCCACTTCTGTGACAGAGTTATGTTCCTTCCTTGGATTGACTAATTACTATCAAAGGTACGACTTGAAGATGGCCAGGCGAATGTCAAACTACTTTGACAATTTAAAGGTCACAATGACGAGGGGTTCTATCTTCGGATTAGTGGACATATCTAAGTTGTTTATAGTTGAGACTGATGTGTCAAACTTTGCCCTTGGAGGTGTCCTTACCCAAGAGGGTCATCCAATAGCTTACGAGAGTCATAAGCTTAATAGCGCTGAGAGGAGGTACACTGTCTCCAAGAAGGAAATGCTTGTCGTGGTCCATTATCTGAGGGCCTTGAGGCAATATTTACTGAGATCACCATTCGTGGTGAAATCTGACAACATCGTCATCAGCCACTTCTTTAGCCAACCTAAATTGACGTCTAAACAAGCGAGATGA

Protein sequence

MDEDELRAIKEWRAPTSVTELCSFLGLTNYYQRYDLKMARRMSNYFDNLKVTMTRGSIFGLVDISKLFIVETDVSNFALGGVLTQEGHPIAYESHKLNSAERRYTVSKKEMLVVVHYLRALRQYLLRSPFVVKSDNIVISHFFSQPKLTSKQAR

Homology

[Close]

BLAST of IVF0016463 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.8e-17
Identity = 53/152 (34.87%), Postives = 81/152 (53.29%), Query Frame = 0


Query: 5   ELRAIKEWRAPTSVTELCSFLGLTNYYQRY---DLKMARRMSN----------------- 64
           +++AI  +  PT   E+ +FLGLT YY+++      +A+ M++                 
Sbjct: 425 KVKAIVSYPIPTKDKEIRAFLGLTGYYRKFIPNYADIAKPMTSCLKKRTKIDTQKLEYIE 484

Query: 65  YFDNLKVTMTRGSIFGLVDISKLFIVETDVSNFALGGVLTQEGHPIAYESHKLNSAERRY 124
            F+ LK  + R  I  L D  K F++ TD SN ALG VL+Q GHPI++ S  LN  E  Y
Sbjct: 485 AFEKLKALIIRDPILQLPDFEKKFVLTTDASNLALGAVLSQNGHPISFISRTLNDHELNY 544

Query: 125 TVSKKEMLVVVHYLRALRQYLLRSPFVVKSDN 137
           +  +KE+L +V   +  R YLL   F++ SD+
Sbjct: 545 SAIEKELLAIVWATKTFRHYLLGRQFLIASDH 576

[Close]

BLAST of IVF0016463 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 2.3e-17
Identity = 54/171 (31.58%), Postives = 87/171 (50.88%), Query Frame = 0


Query: 4   DELRAIKEWRAPTSVTELCSFLGLTNYYQRY-----------------DLKMARRMSNY- 63
           +++ AI+++  PT   E+ +FLGLT YY+++                 ++K+      Y 
Sbjct: 425 EKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFADIAKPMTKCLKKNMKIDTTNPEYD 484

Query: 64  --FDNLKVTMTRGSIFGLVDISKLFIVETDVSNFALGGVLTQEGHPIAYESHKLNSAERR 123
             F  LK  ++   I  + D +K F + TD S+ ALG VL+Q+GHP++Y S  LN  E  
Sbjct: 485 SAFKKLKYLISEDPILKVPDFTKKFTLTTDASDVALGAVLSQDGHPLSYISRTLNEHEIN 544

Query: 124 YTVSKKEMLVVVHYLRALRQYLLRSPFVVKSDNIVISHFFSQPKLTSKQAR 155
           Y+  +KE+L +V   +  R YLL   F + SD+  +S  +      SK  R
Sbjct: 545 YSTIEKELLAIVWATKTFRHYLLGRHFEISSDHQPLSWLYRMKDPNSKLTR 595

[Close]

BLAST of IVF0016463 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.5e-13
Identity = 53/158 (33.54%), Postives = 76/158 (48.10%), Query Frame = 0


Query: 2   DEDELRAIKEWRAPTSVTELCSFLGLTNYYQRY---DLKMARRMSNY------------- 61
           D  ++RAI E   PTSV EL  FLG+T+YY+++     K+A+ ++N              
Sbjct: 339 DPKKVRAISEMPPPTSVKELKRFLGMTSYYRKFIQDYAKVAKPLTNLTRGLYANIKSSQS 398

Query: 62  --------------FDNLKVTMTRGSIFGLVDISKLFIVETDVSNFALGGVLTQE----G 121
                         F++LK  +    I      +K F + TD SN+A+G VL+Q+     
Sbjct: 399 SKVPITLDETALQSFNDLKSILCSSEILAFPCFTKPFHLTTDASNWAIGAVLSQDDQGRD 458

Query: 122 HPIAYESHKLNSAERRYTVSKKEMLVVVHYLRALRQYL 126
            PIAY S  LN  E  Y   +KEML ++  L  LR YL
Sbjct: 459 RPIAYISRSLNKTEENYATIEKEMLAIIWSLDNLRAYL 496

[Close]

BLAST of IVF0016463 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 4.3e-11
Identity = 43/160 (26.88%), Postives = 79/160 (49.38%), Query Frame = 0


Query: 3   EDELRAIKEWRAPTSVTELCSFLGLTNYYQRYDLKMAR-------------------RMS 62
           ++ +  + +W+ P +  EL  FLG  NY +++  K ++                     +
Sbjct: 624 QENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQT 683

Query: 63  NYFDNLKVTMTRGSIFGLVDISKLFIVETDVSNFALGGVLTQEG-----HPIAYESHKLN 122
              +N+K  +    +    D SK  ++ETD S+ A+G VL+Q+      +P+ Y S K++
Sbjct: 684 QAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMS 743

Query: 123 SAERRYTVSKKEMLVVVHYLRALRQYLLRS--PFVVKSDN 137
            A+  Y+VS KEML ++  L+  R YL  +  PF + +D+
Sbjct: 744 KAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDH 783

[Close]

BLAST of IVF0016463 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 4.3e-11
Identity = 43/160 (26.88%), Postives = 79/160 (49.38%), Query Frame = 0


Query: 3   EDELRAIKEWRAPTSVTELCSFLGLTNYYQRYDLKMAR-------------------RMS 62
           ++ +  + +W+ P +  EL  FLG  NY +++  K ++                     +
Sbjct: 624 QENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQT 683

Query: 63  NYFDNLKVTMTRGSIFGLVDISKLFIVETDVSNFALGGVLTQEG-----HPIAYESHKLN 122
              +N+K  +    +    D SK  ++ETD S+ A+G VL+Q+      +P+ Y S K++
Sbjct: 684 QAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMS 743

Query: 123 SAERRYTVSKKEMLVVVHYLRALRQYLLRS--PFVVKSDN 137
            A+  Y+VS KEML ++  L+  R YL  +  PF + +D+
Sbjct: 744 KAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDH 783

[Close]

BLAST of IVF0016463 vs. ExPASy TrEMBL
Match: A0A5D3E481 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84664G00330 PE=4 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 3.9e-60
Identity = 122/123 (99.19%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 32  QRYDLKMARRMSNYFDNLKVTMTRGSIFGLVDISKLFIVETDVSNFALGGVLTQEGHPIA 91
           +RYDLKMARRMSNYFDNLKVTMTRGSIFGLVDISKLFIVETDVSNFALGGVLTQEGHPIA
Sbjct: 222 ERYDLKMARRMSNYFDNLKVTMTRGSIFGLVDISKLFIVETDVSNFALGGVLTQEGHPIA 281

Query: 92  YESHKLNSAERRYTVSKKEMLVVVHYLRALRQYLLRSPFVVKSDNIVISHFFSQPKLTSK 151
           YESHKLNSAERRYTVSKKEMLVVVHYLRALRQYLLRSPFVVKSDNIVISHFFSQPKLTSK
Sbjct: 282 YESHKLNSAERRYTVSKKEMLVVVHYLRALRQYLLRSPFVVKSDNIVISHFFSQPKLTSK 341

Query: 152 QAR 155
           QAR
Sbjct: 342 QAR 344

[Close]

BLAST of IVF0016463 vs. ExPASy TrEMBL
Match: A0A5A7T425 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G00630 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 2.6e-59
Identity = 120/123 (97.56%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 32  QRYDLKMARRMSNYFDNLKVTMTRGSIFGLVDISKLFIVETDVSNFALGGVLTQEGHPIA 91
           +RYDLKMARRMSNYFDNLKVTMTRGSIFGLVD+SKLFIVETDVSNFALGGVLTQEGHPIA
Sbjct: 222 ERYDLKMARRMSNYFDNLKVTMTRGSIFGLVDMSKLFIVETDVSNFALGGVLTQEGHPIA 281

Query: 92  YESHKLNSAERRYTVSKKEMLVVVHYLRALRQYLLRSPFVVKSDNIVISHFFSQPKLTSK 151
           YESHKLNSAERRYTVS+KEMLVVVHYLRALRQYLLRSPFVVKSDNIVISHFFSQPKLTSK
Sbjct: 282 YESHKLNSAERRYTVSEKEMLVVVHYLRALRQYLLRSPFVVKSDNIVISHFFSQPKLTSK 341

Query: 152 QAR 155
           QAR
Sbjct: 342 QAR 344

[Close]

BLAST of IVF0016463 vs. ExPASy TrEMBL
Match: A0A6J1IEF9 (uncharacterized protein LOC111474945 OS=Cucurbita maxima OX=3661 GN=LOC111474945 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 6.5e-47
Identity = 102/173 (58.96%), Postives = 124/173 (71.68%), Query Frame = 0


Query: 1   MDEDELRAIKEWRAPTSVTELCSFLGLTNYYQRYDLKMARRMSNY--------------- 60
           MD D+++AI+EW+ PTSV++L SFLGL NYY+R+    +RR +                 
Sbjct: 767 MDSDKIKAIQEWKVPTSVSDLRSFLGLANYYRRFVEGFSRRAAPLTELLKKDHTWSWSDD 826

Query: 61  ----FDNLKVTMTRGSIFGLVDISKLFIVETDVSNFALGGVLTQEGHPIAYESHKLNSAE 120
               F++LK TMTRG + GLVD++K F +ETD S+FALGGVL QEGHPIA+ES KLN AE
Sbjct: 827 CQMAFEDLKTTMTRGPVLGLVDVTKPFEIETDASDFALGGVLIQEGHPIAFESRKLNDAE 886

Query: 121 RRYTVSKKEMLVVVHYLRALRQYLLRSPFVVKSDNIVISHFFSQPKLTSKQAR 155
           RRYTVS+KEML VVH LR  RQYLL S FVVK+DN  I HFF QPKLT+KQAR
Sbjct: 887 RRYTVSEKEMLAVVHCLRVWRQYLLGSQFVVKTDNSAICHFFDQPKLTAKQAR 939

[Close]

BLAST of IVF0016463 vs. ExPASy TrEMBL
Match: A0A6J1IDF7 (uncharacterized protein LOC111474215 OS=Cucurbita maxima OX=3661 GN=LOC111474215 PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 1.4e-44
Identity = 99/173 (57.23%), Postives = 122/173 (70.52%), Query Frame = 0


Query: 1   MDEDELRAIKEWRAPTSVTELCSFLGLTNYYQRYDLKMARRMSNY--------------- 60
           MD D+++AI+EW+ PTSV++L SFLGL NYY+R+    +RR +                 
Sbjct: 768 MDSDKIKAIQEWKVPTSVSDLRSFLGLANYYRRFVEGFSRRAAPLKELLKKDHPWLWSND 827

Query: 61  ----FDNLKVTMTRGSIFGLVDISKLFIVETDVSNFALGGVLTQEGHPIAYESHKLNSAE 120
               F++LK TM  G + GLVD++K F +ETD S+FALGGVL QEGHPIA+ES KLN AE
Sbjct: 828 CQMAFEDLKTTMMWGPVLGLVDVTKPFEIETDASDFALGGVLIQEGHPIAFESRKLNDAE 887

Query: 121 RRYTVSKKEMLVVVHYLRALRQYLLRSPFVVKSDNIVISHFFSQPKLTSKQAR 155
           RRY VS+K+ML VVH LR  RQYLL S FVVK+DN VI HFF QPKLT+KQAR
Sbjct: 888 RRYIVSEKKMLTVVHCLRVWRQYLLGSQFVVKTDNSVICHFFDQPKLTAKQAR 940

[Close]

BLAST of IVF0016463 vs. ExPASy TrEMBL
Match: A0A6J1D906 (Reverse transcriptase OS=Momordica charantia OX=3673 GN=LOC111018360 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.8e-44
Identity = 99/173 (57.23%), Postives = 122/173 (70.52%), Query Frame = 0


Query: 1    MDEDELRAIKEWRAPTSVTELCSFLGLTNYYQRYDLKMARRMS----------------- 60
            MD D+++AI+EWR PTSV EL SFLGL NYY+R+    +RR +                 
Sbjct: 865  MDTDKVKAIQEWRVPTSVIELRSFLGLANYYRRFIEGFSRRATPMTELLKKGMTWMWSKE 924

Query: 61   --NYFDNLKVTMTRGSIFGLVDISKLFIVETDVSNFALGGVLTQEGHPIAYESHKLNSAE 120
              + F++LK  M +G + GL D++K F VETD S++ALGGVL Q+ HPI YES KLN+AE
Sbjct: 925  SQDAFEDLKAAMMKGPVLGLADVTKPFEVETDASDYALGGVLLQDDHPIXYESRKLNNAE 984

Query: 121  RRYTVSKKEMLVVVHYLRALRQYLLRSPFVVKSDNIVISHFFSQPKLTSKQAR 155
            RRYTVS+KEML VVH LR+ RQYLL S FVVK+DN  I HFF+QPKLTSKQAR
Sbjct: 985  RRYTVSEKEMLAVVHCLRSWRQYLLGSXFVVKTDNSAICHFFNQPKLTSKQAR 1037

[Close]

BLAST of IVF0016463 vs. NCBI nr
Match: TYK30619.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 241 bits (615), Expect = 1.66e-76
Identity = 122/123 (99.19%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 32  QRYDLKMARRMSNYFDNLKVTMTRGSIFGLVDISKLFIVETDVSNFALGGVLTQEGHPIA 91
           +RYDLKMARRMSNYFDNLKVTMTRGSIFGLVDISKLFIVETDVSNFALGGVLTQEGHPIA
Sbjct: 222 ERYDLKMARRMSNYFDNLKVTMTRGSIFGLVDISKLFIVETDVSNFALGGVLTQEGHPIA 281

Query: 92  YESHKLNSAERRYTVSKKEMLVVVHYLRALRQYLLRSPFVVKSDNIVISHFFSQPKLTSK 151
           YESHKLNSAERRYTVSKKEMLVVVHYLRALRQYLLRSPFVVKSDNIVISHFFSQPKLTSK
Sbjct: 282 YESHKLNSAERRYTVSKKEMLVVVHYLRALRQYLLRSPFVVKSDNIVISHFFSQPKLTSK 341

Query: 152 QAR 154
           QAR
Sbjct: 342 QAR 344

[Close]

BLAST of IVF0016463 vs. NCBI nr
Match: KAA0038224.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 238 bits (608), Expect = 1.90e-75
Identity = 120/123 (97.56%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 32  QRYDLKMARRMSNYFDNLKVTMTRGSIFGLVDISKLFIVETDVSNFALGGVLTQEGHPIA 91
           +RYDLKMARRMSNYFDNLKVTMTRGSIFGLVD+SKLFIVETDVSNFALGGVLTQEGHPIA
Sbjct: 222 ERYDLKMARRMSNYFDNLKVTMTRGSIFGLVDMSKLFIVETDVSNFALGGVLTQEGHPIA 281

Query: 92  YESHKLNSAERRYTVSKKEMLVVVHYLRALRQYLLRSPFVVKSDNIVISHFFSQPKLTSK 151
           YESHKLNSAERRYTVS+KEMLVVVHYLRALRQYLLRSPFVVKSDNIVISHFFSQPKLTSK
Sbjct: 282 YESHKLNSAERRYTVSEKEMLVVVHYLRALRQYLLRSPFVVKSDNIVISHFFSQPKLTSK 341

Query: 152 QAR 154
           QAR
Sbjct: 342 QAR 344

[Close]

BLAST of IVF0016463 vs. NCBI nr
Match: XP_023524533.1 (uncharacterized protein LOC111788429 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 200 bits (508), Expect = 4.39e-56
Identity = 105/173 (60.69%), Postives = 123/173 (71.10%), Query Frame = 0


Query: 1    MDEDELRAIKEWRAPTSVTELCSFLGLTNYYQRYDLKMARRMSNY--------------- 60
            MD D+++AI+EW+ PTSV+EL SFLGL NYY+R+    +RR +                 
Sbjct: 871  MDSDKIKAIQEWKVPTSVSELRSFLGLANYYRRFVEGFSRRAAPLTELLKKDHPWSWSND 930

Query: 61   ----FDNLKVTMTRGSIFGLVDISKLFIVETDVSNFALGGVLTQEGHPIAYESHKLNSAE 120
                F+NLK TMTRG + GLVD++K F VETD S+FALGGVL QEGHPIAYES KLN AE
Sbjct: 931  CQMAFENLKTTMTRGPVLGLVDVTKPFEVETDASDFALGGVLIQEGHPIAYESRKLNDAE 990

Query: 121  RRYTVSKKEMLVVVHYLRALRQYLLRSPFVVKSDNIVISHFFSQPKLTSKQAR 154
            RRYTVS+KEML VVH LR  RQYLL S FVVK+DN    HFF QPKLT+KQAR
Sbjct: 991  RRYTVSEKEMLAVVHCLRVWRQYLLGSQFVVKTDNSATCHFFDQPKLTAKQAR 1043

[Close]

BLAST of IVF0016463 vs. NCBI nr
Match: XP_023537907.1 (uncharacterized protein LOC111798805 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 200 bits (508), Expect = 4.68e-56
Identity = 105/173 (60.69%), Postives = 123/173 (71.10%), Query Frame = 0


Query: 1    MDEDELRAIKEWRAPTSVTELCSFLGLTNYYQRYDLKMARRMSNY--------------- 60
            MD D+++AI+EW+ PTSV+EL SFLGL NYY+R+    +RR +                 
Sbjct: 871  MDSDKIKAIQEWKVPTSVSELRSFLGLANYYRRFVEGFSRRAAPLTELLKKDHPWSWSND 930

Query: 61   ----FDNLKVTMTRGSIFGLVDISKLFIVETDVSNFALGGVLTQEGHPIAYESHKLNSAE 120
                F+NLK TMTRG + GLVD++K F VETD S+FALGGVL QEGHPIAYES KLN AE
Sbjct: 931  CQMAFENLKTTMTRGPVLGLVDVTKPFEVETDASDFALGGVLIQEGHPIAYESRKLNDAE 990

Query: 121  RRYTVSKKEMLVVVHYLRALRQYLLRSPFVVKSDNIVISHFFSQPKLTSKQAR 154
            RRYTVS+KEML VVH LR  RQYLL S FVVK+DN    HFF QPKLT+KQAR
Sbjct: 991  RRYTVSEKEMLAVVHCLRVWRQYLLGSQFVVKTDNSATCHFFDQPKLTAKQAR 1043

[Close]

BLAST of IVF0016463 vs. NCBI nr
Match: XP_022975516.1 (uncharacterized protein LOC111474945, partial [Cucurbita maxima])

HSP 1 Score: 197 bits (500), Expect = 4.49e-55
Identity = 102/173 (58.96%), Postives = 124/173 (71.68%), Query Frame = 0


Query: 1   MDEDELRAIKEWRAPTSVTELCSFLGLTNYYQRYDLKMARRMSNY--------------- 60
           MD D+++AI+EW+ PTSV++L SFLGL NYY+R+    +RR +                 
Sbjct: 767 MDSDKIKAIQEWKVPTSVSDLRSFLGLANYYRRFVEGFSRRAAPLTELLKKDHTWSWSDD 826

Query: 61  ----FDNLKVTMTRGSIFGLVDISKLFIVETDVSNFALGGVLTQEGHPIAYESHKLNSAE 120
               F++LK TMTRG + GLVD++K F +ETD S+FALGGVL QEGHPIA+ES KLN AE
Sbjct: 827 CQMAFEDLKTTMTRGPVLGLVDVTKPFEIETDASDFALGGVLIQEGHPIAFESRKLNDAE 886

Query: 121 RRYTVSKKEMLVVVHYLRALRQYLLRSPFVVKSDNIVISHFFSQPKLTSKQAR 154
           RRYTVS+KEML VVH LR  RQYLL S FVVK+DN  I HFF QPKLT+KQAR
Sbjct: 887 RRYTVSEKEMLAVVHCLRVWRQYLLGSQFVVKTDNSAICHFFDQPKLTAKQAR 939

The following BLAST results are available for this feature:

BLAST of IVF0016463 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P20825	1.8e-17	34.87	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P04323	2.3e-17	31.58	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
Q8I7P9	3.5e-13	33.54	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
Q9UR07	4.3e-11	26.88	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	4.3e-11	26.88	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]

BLAST of IVF0016463 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E481	3.9e-60	99.19	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84...	[more]
A0A5A7T425	2.6e-59	97.56	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27...	[more]
A0A6J1IEF9	6.5e-47	58.96	uncharacterized protein LOC111474945 OS=Cucurbita maxima OX=3661 GN=LOC111474945...	[more]
A0A6J1IDF7	1.4e-44	57.23	uncharacterized protein LOC111474215 OS=Cucurbita maxima OX=3661 GN=LOC111474215...	[more]
A0A6J1D906	1.8e-44	57.23	Reverse transcriptase OS=Momordica charantia OX=3673 GN=LOC111018360 PE=4 SV=1	[more]

BLAST of IVF0016463 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK30619.1	1.66e-76	99.19	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0038224.1	1.90e-75	97.56	reverse transcriptase [Cucumis melo var. makuwa]	[more]
XP_023524533.1	4.39e-56	60.69	uncharacterized protein LOC111788429 [Cucurbita pepo subsp. pepo]	[more]
XP_023537907.1	4.68e-56	60.69	uncharacterized protein LOC111798805 [Cucurbita pepo subsp. pepo]	[more]
XP_022975516.1	4.49e-55	58.96	uncharacterized protein LOC111474945, partial [Cucurbita maxima]	[more]

BLAST of IVF0016463 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR041373	Reverse transcriptase, RNase H-like domain	PFAM	PF17917	RT_RNaseH	coord: 63..154 e-value: 7.9E-22 score: 77.6
None	No IPR available	GENE3D	3.10.20.370		coord: 63..134 e-value: 4.5E-7 score: 31.7
None	No IPR available	PANTHER	PTHR24559:SF360	SUBFAMILY NOT NAMED	coord: 1..154
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 1..154
None	No IPR available	CDD	cd09274	RNase_HI_RT_Ty3	coord: 69..154 e-value: 2.74007E-32 score: 109.504
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 5..54 e-value: 1.4E-7 score: 33.4
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..153

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0016463.1	IVF0016463.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0003964	RNA-directed DNA polymerase activity