IVF0016427 (gene) Melon (IVF77) v1

Overview
NameIVF0016427
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Locationchr09: 11838509 .. 11838784 (+)
RNA-Seq ExpressionIVF0016427
SyntenyIVF0016427
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTCCATATTATGATGATCAGTCCTATGTGTTCGGCAAAGATCAGGCTACAAGAGCACATTTAGAGACCTTTGTTGATGTGAGGTTTAATGTGCCAAACAATTTCGATGGTGTTCCCCTTGGTGATTCACACGATCCGAAGATCCTGATGATATATATCCAGACAGTGGATATGTTACCAGATGAAATGTTGGGAACACGGGTAGGTCGATCAAGTGAAGGAAAAAAATGTTTCAAGTGGAAGCAAGAGGAAATGAGGTGGCCAATTGTTTGA

mRNA sequence

ATGTTTCCATATTATGATGATCAGTCCTATGTGTTCGGCAAAGATCAGGCTACAAGAGCACATTTAGAGACCTTTGTTGATGTGAGGTTTAATGTGCCAAACAATTTCGATGGTGTTCCCCTTGGTGATTCACACGATCCGAAGATCCTGATGATATATATCCAGACAGTGGATATGTTACCAGATGAAATGTTGGGAACACGGGTAGGTCGATCAAGTGAAGGAAAAAAATGTTTCAAGTGGAAGCAAGAGGAAATGAGGTGGCCAATTGTTTGA

Coding sequence (CDS)

ATGTTTCCATATTATGATGATCAGTCCTATGTGTTCGGCAAAGATCAGGCTACAAGAGCACATTTAGAGACCTTTGTTGATGTGAGGTTTAATGTGCCAAACAATTTCGATGGTGTTCCCCTTGGTGATTCACACGATCCGAAGATCCTGATGATATATATCCAGACAGTGGATATGTTACCAGATGAAATGTTGGGAACACGGGTAGGTCGATCAAGTGAAGGAAAAAAATGTTTCAAGTGGAAGCAAGAGGAAATGAGGTGGCCAATTGTTTGA

Protein sequence

MFPYYDDQSYVFGKDQATRAHLETFVDVRFNVPNNFDGVPLGDSHDPKILMIYIQTVDMLPDEMLGTRVGRSSEGKKCFKWKQEEMRWPIV
Homology
BLAST of IVF0016427 vs. ExPASy TrEMBL
Match: A0A5D3DS65 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G001260 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 5.4e-33
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0

Query: 1  MFPYYDDQSYVFGKDQATRAHLETFVDVRFNVPNNFDGVPLGDSHDPKILMIYIQTVDML 60
          MFPYYDDQSYVFGKDQATRAHLETFVDVRFNVPNNFDGVPLGDSHDPKILMIYIQTVDML
Sbjct: 1  MFPYYDDQSYVFGKDQATRAHLETFVDVRFNVPNNFDGVPLGDSHDPKILMIYIQTVDML 60

Query: 61 PDEMLGTRV 70
          PDEMLGTRV
Sbjct: 61 PDEMLGTRV 69

BLAST of IVF0016427 vs. ExPASy TrEMBL
Match: A0A5A7SQU2 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold472G00070 PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 5.8e-19
Identity = 51/78 (65.38%), Postives = 56/78 (71.79%), Query Frame = 0

Query: 2   FPYYDDQSYVFGKDQATRAHLETFVDVRFNVPNNFDG-VPLGDSHDPKILMIYIQTVDML 61
           FPYYDD  YVFGKD+ATRA  ETF DV  NVPN F+G VPL DSHD  I M+Y Q V M 
Sbjct: 319 FPYYDDLFYVFGKDRATRARSETFADVGSNVPNMFNGDVPLDDSHDQDIPMMYSQGVHMS 378

Query: 62  PDEMLGTRVGRSSEGKKC 79
           PDEM G R G++SE K C
Sbjct: 379 PDEMFGIRAGQASERKNC 396

BLAST of IVF0016427 vs. ExPASy TrEMBL
Match: A0A5D3CVB7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00360 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 3.8e-18
Identity = 50/78 (64.10%), Postives = 55/78 (70.51%), Query Frame = 0

Query: 2   FPYYDDQSYVFGKDQATRAHLETFVDVRFNVPNNF-DGVPLGDSHDPKILMIYIQTVDML 61
           FPYYDD SYVFGKDQAT A  ETF DV  N+PN F DGVPLGDSH   I  +Y Q V M 
Sbjct: 25  FPYYDDVSYVFGKDQATEARSETFADVGSNIPNMFNDGVPLGDSHHEDIPTMYSQGVLMS 84

Query: 62  PDEMLGTRVGRSSEGKKC 79
            DEM GTR G++SE + C
Sbjct: 85  LDEMFGTRAGQASERRNC 102

BLAST of IVF0016427 vs. ExPASy TrEMBL
Match: A0A5A7USN6 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G00100 PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 5.4e-17
Identity = 48/78 (61.54%), Postives = 55/78 (70.51%), Query Frame = 0

Query: 2   FPYYDDQSYVFGKDQATRAHLETFVDVRFNVPNNF-DGVPLGDSHDPKILMIYIQTVDML 61
           FPYYDD SYVFGKD+AT+   ETF  V  NVPN F DGVPLGDSH+  I M+Y Q V M 
Sbjct: 181 FPYYDDLSYVFGKDRATKERSETFSGVGSNVPNMFNDGVPLGDSHNQDIPMMYSQGVHMS 240

Query: 62  PDEMLGTRVGRSSEGKKC 79
            DEM G R G++SE + C
Sbjct: 241 IDEMFGIRAGQASERRNC 258

BLAST of IVF0016427 vs. ExPASy TrEMBL
Match: A0A5A7U0H7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G002060 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.1e-16
Identity = 47/78 (60.26%), Postives = 54/78 (69.23%), Query Frame = 0

Query: 2   FPYYDDQSYVFGKDQATRAHLETFVDVRFNVPNNF-DGVPLGDSHDPKILMIYIQTVDML 61
           FPYYDD SYVFGKD+AT A  ETF +V  NV N F D +PLGDSHD  I  +Y Q V M 
Sbjct: 126 FPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLGDSHDEDIPTMYSQGVHMS 185

Query: 62  PDEMLGTRVGRSSEGKKC 79
           PDEM G R G++SE + C
Sbjct: 186 PDEMFGIRAGQASERRNC 203

BLAST of IVF0016427 vs. NCBI nr
Match: KAA0067395.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK26536.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 149 bits (375), Expect = 4.28e-44
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0

Query: 1  MFPYYDDQSYVFGKDQATRAHLETFVDVRFNVPNNFDGVPLGDSHDPKILMIYIQTVDML 60
          MFPYYDDQSYVFGKDQATRAHLETFVDVRFNVPNNFDGVPLGDSHDPKILMIYIQTVDML
Sbjct: 1  MFPYYDDQSYVFGKDQATRAHLETFVDVRFNVPNNFDGVPLGDSHDPKILMIYIQTVDML 60

Query: 61 PDEMLGTRV 69
          PDEMLGTRV
Sbjct: 61 PDEMLGTRV 69

BLAST of IVF0016427 vs. NCBI nr
Match: KAA0042340.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK15465.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 99.8 bits (247), Expect = 1.02e-23
Identity = 50/78 (64.10%), Postives = 55/78 (70.51%), Query Frame = 0

Query: 2   FPYYDDQSYVFGKDQATRAHLETFVDVRFNVPNNF-DGVPLGDSHDPKILMIYIQTVDML 61
           FPYYDD SYVFGKDQAT A  ETF DV  N+PN F DGVPLGDSH   I  +Y Q V M 
Sbjct: 25  FPYYDDVSYVFGKDQATEARSETFADVGSNIPNMFNDGVPLGDSHHEDIPTMYSQGVLMS 84

Query: 62  PDEMLGTRVGRSSEGKKC 78
            DEM GTR G++SE + C
Sbjct: 85  LDEMFGTRAGQASERRNC 102

BLAST of IVF0016427 vs. NCBI nr
Match: KAA0033290.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK14818.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 102 bits (254), Expect = 4.60e-23
Identity = 51/78 (65.38%), Postives = 56/78 (71.79%), Query Frame = 0

Query: 2   FPYYDDQSYVFGKDQATRAHLETFVDVRFNVPNNFDG-VPLGDSHDPKILMIYIQTVDML 61
           FPYYDD  YVFGKD+ATRA  ETF DV  NVPN F+G VPL DSHD  I M+Y Q V M 
Sbjct: 319 FPYYDDLFYVFGKDRATRARSETFADVGSNVPNMFNGDVPLDDSHDQDIPMMYSQGVHMS 378

Query: 62  PDEMLGTRVGRSSEGKKC 78
           PDEM G R G++SE K C
Sbjct: 379 PDEMFGIRAGQASERKNC 396

BLAST of IVF0016427 vs. NCBI nr
Match: KAA0056515.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK12085.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 95.9 bits (237), Expect = 2.23e-21
Identity = 48/78 (61.54%), Postives = 55/78 (70.51%), Query Frame = 0

Query: 2   FPYYDDQSYVFGKDQATRAHLETFVDVRFNVPNNF-DGVPLGDSHDPKILMIYIQTVDML 61
           FPYYDD SYVFGKD+AT+   ETF  V  NVPN F DGVPLGDSH+  I M+Y Q V M 
Sbjct: 181 FPYYDDLSYVFGKDRATKERSETFSGVGSNVPNMFNDGVPLGDSHNQDIPMMYSQGVHMS 240

Query: 62  PDEMLGTRVGRSSEGKKC 78
            DEM G R G++SE + C
Sbjct: 241 IDEMFGIRAGQASERRNC 258

BLAST of IVF0016427 vs. NCBI nr
Match: KGN66659.1 (hypothetical protein Csa_007642 [Cucumis sativus])

HSP 1 Score: 90.9 bits (224), Expect = 3.40e-21
Identity = 43/64 (67.19%), Postives = 50/64 (78.12%), Query Frame = 0

Query: 14 KDQATRAHLETFVDVRFNVPNNF-DGVPLGDSHDPKILMIYIQTVDMLPDEMLGTRVGRS 73
          KDQAT   LE FVD++ NVPN F DGVP GDSHDP ILM+Y Q +DM  DEMLGT VG++
Sbjct: 25 KDQATEGRLEIFVDIKSNVPNQFNDGVPFGDSHDPNILMMYSQGMDMSSDEMLGTCVGQT 84

Query: 74 SEGK 76
          SEG+
Sbjct: 85 SEGR 88

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DS655.4e-33100.00Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7SQU25.8e-1965.38Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A5D3CVB73.8e-1864.10Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7USN65.4e-1761.54Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A5A7U0H72.1e-1660.26Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0067395.14.28e-44100.00retrotransposon protein [Cucumis melo var. makuwa] >TYK26536.1 retrotransposon p... [more]
KAA0042340.11.02e-2364.10retrotransposon protein [Cucumis melo var. makuwa] >TYK15465.1 retrotransposon p... [more]
KAA0033290.14.60e-2365.38putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK14818.1 putative nucleas... [more]
KAA0056515.12.23e-2161.54putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK12085.1 putative nucleas... [more]
KGN66659.13.40e-2167.19hypothetical protein Csa_007642 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0016427.1IVF0016427.1mRNA