IVF0016412 (gene) Melon (IVF77) v1

Overview
NameIVF0016412
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr01: 1786081 .. 1786553 (-)
RNA-Seq ExpressionIVF0016412
SyntenyIVF0016412
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAGGGCCGAGGGGCAGCCGAAAATACGAAAAAGAGAGGGAGAGAGCAGCCGACGAAAACTTCTGCAACGGAGGAACTGAGTCGAACGGCTACTGGACGGAGATCGACGTCAGCGTAGGTTCTTCCGGCAAGTTAGGAGGGGCGTTCAATTGACGGCGTTCGGCTTTGTTTTTTCGAGCAGTTTTACAGCGGCGTTCCGGCTCCGGCGTTCGTTTGAGCGGCTTGGCGGTGGTTTTGGCCGTGGTTTCGAGCCGTCAGAGGTTAGTTTAGCCGTTGGGTGTTATTCTGCCGTGGGTTCTTCTTGGGTTTGCAGTGGGTTGTTTGACACGTTGATCACCGGTCGGAGGAGGTCGTCTCCGGTGGGTTTTGGGTCTGGGTATCAGAGGCAGCAGCCGACAGTATTTGTAATTGTAACTTTACTTGCTCTTAATAAAAAATTTCAAGGTGGTTTTCAAAGTGGATGTAGTTGA

mRNA sequence

ATGAGAGGGCCGAGGGGCAGCCGAAAATACGAAAAAGAGAGGGAGAGAGCAGCCGACGAAAACTTCTGCAACGGAGGAACTGAGTCGAACGGCTACTGGACGGAGATCGACGTCAGCGTAGGTTCTTCCGGCAATTTTACAGCGGCGTTCCGGCTCCGGCGTTCGTTTGAGCGGCTTGGCGGTGGTTTTGGCCGTGGTTTCGAGCCGTCAGAGGTTAGTTTAGCCGTTGGGTGTTATTCTGCCGTGGGTTCTTCTTGGGTTTGCAGTGGGTTGTTTGACACGTTGATCACCGGTCGGAGGAGGTCGTCTCCGGTGGGTTTTGGGTCTGGGTATCAGAGGCAGCAGCCGACAGTATTTGTAATTGTAACTTTACTTGCTCTTAATAAAAAATTTCAAGGTGGTTTTCAAAGTGGATGTAGTTGA

Coding sequence (CDS)

ATGAGAGGGCCGAGGGGCAGCCGAAAATACGAAAAAGAGAGGGAGAGAGCAGCCGACGAAAACTTCTGCAACGGAGGAACTGAGTCGAACGGCTACTGGACGGAGATCGACGTCAGCGTAGGTTCTTCCGGCAATTTTACAGCGGCGTTCCGGCTCCGGCGTTCGTTTGAGCGGCTTGGCGGTGGTTTTGGCCGTGGTTTCGAGCCGTCAGAGGTTAGTTTAGCCGTTGGGTGTTATTCTGCCGTGGGTTCTTCTTGGGTTTGCAGTGGGTTGTTTGACACGTTGATCACCGGTCGGAGGAGGTCGTCTCCGGTGGGTTTTGGGTCTGGGTATCAGAGGCAGCAGCCGACAGTATTTGTAATTGTAACTTTACTTGCTCTTAATAAAAAATTTCAAGGTGGTTTTCAAAGTGGATGTAGTTGA

Protein sequence

MRGPRGSRKYEKERERAADENFCNGGTESNGYWTEIDVSVGSSGNFTAAFRLRRSFERLGGGFGRGFEPSEVSLAVGCYSAVGSSWVCSGLFDTLITGRRRSSPVGFGSGYQRQQPTVFVIVTLLALNKKFQGGFQSGCS
Homology
[Close]
BLAST of IVF0016412 vs. ExPASy TrEMBL
Match: A0A5A7SK96 (Putative CRM domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G002570 PE=4 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 1.3e-49
Identity = 103/110 (93.64%), Postives = 103/110 (93.64%), Query Frame = 0 

Query: 1   MRGPRGSRKYEKERERAADENFCNGGTESNGYWTEIDVSVGSSGNFTAAFRLRRSFERLG 60
           MRGPRGSRKYEKERERAADENFCNGGTESNGYWTEIDVSV       AAFRLRRSFERLG
Sbjct: 1   MRGPRGSRKYEKERERAADENFCNGGTESNGYWTEIDVSV-------AAFRLRRSFERLG 60

Query: 61  GGFGRGFEPSEVSLAVGCYSAVGSSWVCSGLFDTLITGRRRSSPVGFGSG 111
           GGFGRGFEPSEVSLAVGCYSAVGSSWVCSGLFDTLITGRRRSSPVGFGSG
Sbjct: 61  GGFGRGFEPSEVSLAVGCYSAVGSSWVCSGLFDTLITGRRRSSPVGFGSG 103

[Close]
BLAST of IVF0016412 vs. NCBI nr
Match: KAA0031492.1 (putative CRM domain-containing protein [Cucumis melo var. makuwa] >TYK06945.1 putative CRM domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 206 bits (523), Expect = 7.77e-62
Identity = 103/110 (93.64%), Postives = 103/110 (93.64%), Query Frame = 0 

Query: 1   MRGPRGSRKYEKERERAADENFCNGGTESNGYWTEIDVSVGSSGNFTAAFRLRRSFERLG 60
           MRGPRGSRKYEKERERAADENFCNGGTESNGYWTEIDVSV       AAFRLRRSFERLG
Sbjct: 1   MRGPRGSRKYEKERERAADENFCNGGTESNGYWTEIDVSV-------AAFRLRRSFERLG 60

Query: 61  GGFGRGFEPSEVSLAVGCYSAVGSSWVCSGLFDTLITGRRRSSPVGFGSG 110
           GGFGRGFEPSEVSLAVGCYSAVGSSWVCSGLFDTLITGRRRSSPVGFGSG
Sbjct: 61  GGFGRGFEPSEVSLAVGCYSAVGSSWVCSGLFDTLITGRRRSSPVGFGSG 103

The following BLAST results are available for this feature:
BLAST of IVF0016412 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0016412 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SK961.3e-4993.64Putative CRM domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN... [more]
BLAST of IVF0016412 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0031492.17.77e-6293.64putative CRM domain-containing protein [Cucumis melo var. makuwa] >TYK06945.1 pu... [more]
BLAST of IVF0016412 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0016412.1IVF0016412.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003723 RNA binding