IVF0016374 (gene) Melon (IVF77) v1

Overview
NameIVF0016374
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionBED-type domain-containing protein
Locationchr05: 11851964 .. 11852452 (-)
RNA-Seq ExpressionIVF0016374
SyntenyIVF0016374
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCAAGAAAAAGGAGATCAAAGAACAAAGAAATTTGATTGTGGACATTGATGTACAAGATTATGGTATCGAGGATGAAGATGAAGGGAGTATTAGTGTAAATAACAGAGCAACATCAAGTGGCTCGAGCTTGAAGAAGCCAAGACAAAAGGGTCCAATGGATGCATTTTTTACTCCCAATCCAGAAACTGTGGTTCAAAATAGAAAGAATGACAAAGGAAAACAAACTTCGTTGAATGCGACGTACAAGAAGGAAATGAGGGAGCGCACCATCCAAAGAATTGCTCGATGGTTTTATGATGCAGGAGTGCCTTTGAATGCTTGCACATATAATAGTTTTGCCCCTATGATTGAGTCAATTGGGCAATTTGGTCCTGGATTGAAACCACCAACATATCATGAGTTGAGAGTTTCATGTTTGAAGAAAGAATTAGAAACAACAAATGAGTTGATGAGGAGCCATAAAGCAGAGTGGGCTAAGGTTTGA

mRNA sequence

ATGTCCAAGAAAAAGGAGATCAAAGAACAAAGAAATTTGATTGTGGACATTGATGTACAAGATTATGGTATCGAGGATGAAGATGAAGGGAGTATTAGTGTAAATAACAGAGCAACATCAAGTGGCTCGAGCTTGAAGAAGCCAAGACAAAAGGGTCCAATGGATGCATTTTTTACTCCCAATCCAGAAACTGTGGTTCAAAATAGAAAGAATGACAAAGGAAAACAAACTTCGTTGAATGCGACGTACAAGAAGGAAATGAGGGAGCGCACCATCCAAAGAATTGCTCGATGGTTTTATGATGCAGGAGTGCCTTTGAATGCTTGCACATATAATAGTTTTGCCCCTATGATTGAGTCAATTGGGCAATTTGGTCCTGGATTGAAACCACCAACATATCATGAGTTGAGAGTTTCATGTTTGAAGAAAGAATTAGAAACAACAAATGAGTTGATGAGGAGCCATAAAGCAGAGTGGGCTAAGGTTTGA

Coding sequence (CDS)

ATGTCCAAGAAAAAGGAGATCAAAGAACAAAGAAATTTGATTGTGGACATTGATGTACAAGATTATGGTATCGAGGATGAAGATGAAGGGAGTATTAGTGTAAATAACAGAGCAACATCAAGTGGCTCGAGCTTGAAGAAGCCAAGACAAAAGGGTCCAATGGATGCATTTTTTACTCCCAATCCAGAAACTGTGGTTCAAAATAGAAAGAATGACAAAGGAAAACAAACTTCGTTGAATGCGACGTACAAGAAGGAAATGAGGGAGCGCACCATCCAAAGAATTGCTCGATGGTTTTATGATGCAGGAGTGCCTTTGAATGCTTGCACATATAATAGTTTTGCCCCTATGATTGAGTCAATTGGGCAATTTGGTCCTGGATTGAAACCACCAACATATCATGAGTTGAGAGTTTCATGTTTGAAGAAAGAATTAGAAACAACAAATGAGTTGATGAGGAGCCATAAAGCAGAGTGGGCTAAGGTTTGA

Protein sequence

MSKKKEIKEQRNLIVDIDVQDYGIEDEDEGSISVNNRATSSGSSLKKPRQKGPMDAFFTPNPETVVQNRKNDKGKQTSLNATYKKEMRERTIQRIARWFYDAGVPLNACTYNSFAPMIESIGQFGPGLKPPTYHELRVSCLKKELETTNELMRSHKAEWAKV
Homology
BLAST of IVF0016374 vs. ExPASy TrEMBL
Match: A0A5A7SSR3 (BED-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1327G00190 PE=4 SV=1)

HSP 1 Score: 325.5 bits (833), Expect = 1.3e-85
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 0

Query: 1   MSKKKEIKEQRNLIVDIDVQDYGIEDEDEGSISVNNRATSSGSSLKKPRQKGPMDAFFTP 60
           MSKKKEIKEQRNLIVDIDVQDYGIEDEDEGSISVNNRATSSGSSLKKPRQKGPMDAFFTP
Sbjct: 71  MSKKKEIKEQRNLIVDIDVQDYGIEDEDEGSISVNNRATSSGSSLKKPRQKGPMDAFFTP 130

Query: 61  NPETVVQNRKNDKGKQTSLNATYKKEMRERTIQRIARWFYDAGVPLNACTYNSFAPMIES 120
           NPETVVQNRKNDKGKQTSLNATYKKEMRERTIQRIARWFYDAGVPLNACTYNSFAPMIES
Sbjct: 131 NPETVVQNRKNDKGKQTSLNATYKKEMRERTIQRIARWFYDAGVPLNACTYNSFAPMIES 190

Query: 121 IGQFGPGLKPPTYHELRVSCLKKELETTNELMRSHKAEWAK 162
           IGQFGPGLKPPTYHELRVSCLKKELETTNELMRSHKAEWAK
Sbjct: 191 IGQFGPGLKPPTYHELRVSCLKKELETTNELMRSHKAEWAK 231

BLAST of IVF0016374 vs. ExPASy TrEMBL
Match: A0A5A7TY62 (BED-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold61G001320 PE=4 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 1.1e-81
Identity = 154/162 (95.06%), Postives = 157/162 (96.91%), Query Frame = 0

Query: 1   MSKKKEIKEQRNLIVDIDVQDYGIEDEDEGSISVNNRATSSGSSLKKPRQKGPMDAFFTP 60
           MSKKKEIKEQRNLIVDIDVQDYG+EDEDEGSISVNNRATSSGSSLKKPRQKGPMDAFFTP
Sbjct: 71  MSKKKEIKEQRNLIVDIDVQDYGMEDEDEGSISVNNRATSSGSSLKKPRQKGPMDAFFTP 130

Query: 61  NPETVVQNRKNDKGKQTSLNATYKKEMRERTIQRIARWFYDAGVPLNACTYNSFAPMIES 120
           NPE+VVQNRKNDKGKQTSLNA YKKEMRE TIQRIARWFYDAGVPLNACTY+SFAPMIES
Sbjct: 131 NPESVVQNRKNDKGKQTSLNAAYKKEMREHTIQRIARWFYDAGVPLNACTYDSFAPMIES 190

Query: 121 IGQFGPGLKPPTYHELRVSCLKKELETTNELMRSHKAEWAKV 163
           IGQFGPGLKPPTYHELRV CLKKELE TNELM SHKAEWAKV
Sbjct: 191 IGQFGPGLKPPTYHELRVPCLKKELEATNELMSSHKAEWAKV 232

BLAST of IVF0016374 vs. ExPASy TrEMBL
Match: A0A5D3BV42 (BED-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold6571G00020 PE=4 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 1.1e-81
Identity = 154/162 (95.06%), Postives = 157/162 (96.91%), Query Frame = 0

Query: 1   MSKKKEIKEQRNLIVDIDVQDYGIEDEDEGSISVNNRATSSGSSLKKPRQKGPMDAFFTP 60
           MSKKKEIKEQRNLIVDIDVQDYG+EDEDEGSISVNNRATSSGSSLKKPRQKGPMDAFFTP
Sbjct: 71  MSKKKEIKEQRNLIVDIDVQDYGMEDEDEGSISVNNRATSSGSSLKKPRQKGPMDAFFTP 130

Query: 61  NPETVVQNRKNDKGKQTSLNATYKKEMRERTIQRIARWFYDAGVPLNACTYNSFAPMIES 120
           NPE+VVQNRKNDKGKQTSLNA YKKEMRE TIQRIARWFYDAGVPLNACTY+SFAPMIES
Sbjct: 131 NPESVVQNRKNDKGKQTSLNAAYKKEMREHTIQRIARWFYDAGVPLNACTYDSFAPMIES 190

Query: 121 IGQFGPGLKPPTYHELRVSCLKKELETTNELMRSHKAEWAKV 163
           IGQFGPGLKPPTYHELRV CLKKELE TNELM SHKAEWAKV
Sbjct: 191 IGQFGPGLKPPTYHELRVPCLKKELEATNELMSSHKAEWAKV 232

BLAST of IVF0016374 vs. ExPASy TrEMBL
Match: A0A5A7V8P5 (BED-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G004030 PE=4 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 1.1e-81
Identity = 154/162 (95.06%), Postives = 157/162 (96.91%), Query Frame = 0

Query: 1   MSKKKEIKEQRNLIVDIDVQDYGIEDEDEGSISVNNRATSSGSSLKKPRQKGPMDAFFTP 60
           MSKKKEIKEQRNLIVDIDVQDYG+EDEDEGSISVNNRATSSGSSLKKPRQKGPMDAFFTP
Sbjct: 71  MSKKKEIKEQRNLIVDIDVQDYGMEDEDEGSISVNNRATSSGSSLKKPRQKGPMDAFFTP 130

Query: 61  NPETVVQNRKNDKGKQTSLNATYKKEMRERTIQRIARWFYDAGVPLNACTYNSFAPMIES 120
           NPE+VVQNRKNDKGKQTSLNA YKKEMRE TIQRIARWFYDAGVPLNACTY+SFAPMIES
Sbjct: 131 NPESVVQNRKNDKGKQTSLNAAYKKEMREHTIQRIARWFYDAGVPLNACTYDSFAPMIES 190

Query: 121 IGQFGPGLKPPTYHELRVSCLKKELETTNELMRSHKAEWAKV 163
           IGQFGPGLKPPTYHELRV CLKKELE TNELM SHKAEWAKV
Sbjct: 191 IGQFGPGLKPPTYHELRVPCLKKELEATNELMSSHKAEWAKV 232

BLAST of IVF0016374 vs. ExPASy TrEMBL
Match: A0A5D3DR78 (BED-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1185G00050 PE=4 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 1.1e-81
Identity = 154/162 (95.06%), Postives = 157/162 (96.91%), Query Frame = 0

Query: 1   MSKKKEIKEQRNLIVDIDVQDYGIEDEDEGSISVNNRATSSGSSLKKPRQKGPMDAFFTP 60
           MSKKKEIKEQRNLIVDIDVQDYG+EDEDEGSISVNNRATSSGSSLKKPRQKGPMDAFFTP
Sbjct: 71  MSKKKEIKEQRNLIVDIDVQDYGMEDEDEGSISVNNRATSSGSSLKKPRQKGPMDAFFTP 130

Query: 61  NPETVVQNRKNDKGKQTSLNATYKKEMRERTIQRIARWFYDAGVPLNACTYNSFAPMIES 120
           NPE+VVQNRKNDKGKQTSLNA YKKEMRE TIQRIARWFYDAGVPLNACTY+SFAPMIES
Sbjct: 131 NPESVVQNRKNDKGKQTSLNAAYKKEMREHTIQRIARWFYDAGVPLNACTYDSFAPMIES 190

Query: 121 IGQFGPGLKPPTYHELRVSCLKKELETTNELMRSHKAEWAKV 163
           IGQFGPGLKPPTYHELRV CLKKELE TNELM SHKAEWAKV
Sbjct: 191 IGQFGPGLKPPTYHELRVPCLKKELEATNELMSSHKAEWAKV 232

BLAST of IVF0016374 vs. NCBI nr
Match: KAA0032269.1 (uncharacterized protein E6C27_scaffold219G001030 [Cucumis melo var. makuwa] >TYK17073.1 uncharacterized protein E5676_scaffold1327G00190 [Cucumis melo var. makuwa])

HSP 1 Score: 323 bits (828), Expect = 8.28e-109
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 0

Query: 1   MSKKKEIKEQRNLIVDIDVQDYGIEDEDEGSISVNNRATSSGSSLKKPRQKGPMDAFFTP 60
           MSKKKEIKEQRNLIVDIDVQDYGIEDEDEGSISVNNRATSSGSSLKKPRQKGPMDAFFTP
Sbjct: 71  MSKKKEIKEQRNLIVDIDVQDYGIEDEDEGSISVNNRATSSGSSLKKPRQKGPMDAFFTP 130

Query: 61  NPETVVQNRKNDKGKQTSLNATYKKEMRERTIQRIARWFYDAGVPLNACTYNSFAPMIES 120
           NPETVVQNRKNDKGKQTSLNATYKKEMRERTIQRIARWFYDAGVPLNACTYNSFAPMIES
Sbjct: 131 NPETVVQNRKNDKGKQTSLNATYKKEMRERTIQRIARWFYDAGVPLNACTYNSFAPMIES 190

Query: 121 IGQFGPGLKPPTYHELRVSCLKKELETTNELMRSHKAEWAK 161
           IGQFGPGLKPPTYHELRVSCLKKELETTNELMRSHKAEWAK
Sbjct: 191 IGQFGPGLKPPTYHELRVSCLKKELETTNELMRSHKAEWAK 231

BLAST of IVF0016374 vs. NCBI nr
Match: KAA0053508.1 (uncharacterized protein E6C27_scaffold190G00650 [Cucumis melo var. makuwa])

HSP 1 Score: 303 bits (775), Expect = 2.67e-101
Identity = 151/162 (93.21%), Postives = 155/162 (95.68%), Query Frame = 0

Query: 1   MSKKKEIKEQRNLIVDIDVQDYGIEDEDEGSISVNNRATSSGSSLKKPRQKGPMDAFFTP 60
           MSKKKEIKEQRNLIVDIDVQDYG+EDEDEGSISVNNRATSSGSSLKKPRQKGPMDAFFT 
Sbjct: 71  MSKKKEIKEQRNLIVDIDVQDYGMEDEDEGSISVNNRATSSGSSLKKPRQKGPMDAFFTL 130

Query: 61  NPETVVQNRKNDKGKQTSLNATYKKEMRERTIQRIARWFYDAGVPLNACTYNSFAPMIES 120
           NPE+VVQNRKNDKGKQTSLNA YKKEMRE TIQRIARWFYDAGVPLNACTY+ FAP+IES
Sbjct: 131 NPESVVQNRKNDKGKQTSLNAAYKKEMREHTIQRIARWFYDAGVPLNACTYDIFAPLIES 190

Query: 121 IGQFGPGLKPPTYHELRVSCLKKELETTNELMRSHKAEWAKV 162
           IGQFGPGLKPPTYHELRV CLKKELE TNELM SHKAEWAKV
Sbjct: 191 IGQFGPGLKPPTYHELRVPCLKKELEATNELMSSHKAEWAKV 232

BLAST of IVF0016374 vs. NCBI nr
Match: KAA0066645.1 (uncharacterized protein E6C27_scaffold979G00720 [Cucumis melo var. makuwa])

HSP 1 Score: 310 bits (793), Expect = 3.73e-100
Identity = 154/162 (95.06%), Postives = 156/162 (96.30%), Query Frame = 0

Query: 1   MSKKKEIKEQRNLIVDIDVQDYGIEDEDEGSISVNNRATSSGSSLKKPRQKGPMDAFFTP 60
           MSKKKEIKEQRNLIVDIDVQDYG+EDEDEGSISVNNRATSSGSSLKKPRQKGPMDAFFTP
Sbjct: 1   MSKKKEIKEQRNLIVDIDVQDYGMEDEDEGSISVNNRATSSGSSLKKPRQKGPMDAFFTP 60

Query: 61  NPETVVQNRKNDKGKQTSLNATYKKEMRERTIQRIARWFYDAGVPLNACTYNSFAPMIES 120
           NPETVVQNRKNDKGKQTSLNA YK EMRE TIQRIARWFYDAGVPLNACTY+SFAPMIES
Sbjct: 61  NPETVVQNRKNDKGKQTSLNAAYKNEMREHTIQRIARWFYDAGVPLNACTYDSFAPMIES 120

Query: 121 IGQFGPGLKPPTYHELRVSCLKKELETTNELMRSHKAEWAKV 162
           IGQFGPGLKPPTYHELRV CLKKELE TNELMRSHKAEW KV
Sbjct: 121 IGQFGPGLKPPTYHELRVPCLKKELEATNELMRSHKAEWDKV 162

BLAST of IVF0016374 vs. NCBI nr
Match: TYK03327.1 (hypothetical protein E5676_scaffold6571G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 310 bits (794), Expect = 1.49e-99
Identity = 154/162 (95.06%), Postives = 157/162 (96.91%), Query Frame = 0

Query: 1   MSKKKEIKEQRNLIVDIDVQDYGIEDEDEGSISVNNRATSSGSSLKKPRQKGPMDAFFTP 60
           MSKKKEIKEQRNLIVDIDVQDYG+EDEDEGSISVNNRATSSGSSLKKPRQKGPMDAFFTP
Sbjct: 71  MSKKKEIKEQRNLIVDIDVQDYGMEDEDEGSISVNNRATSSGSSLKKPRQKGPMDAFFTP 130

Query: 61  NPETVVQNRKNDKGKQTSLNATYKKEMRERTIQRIARWFYDAGVPLNACTYNSFAPMIES 120
           NPE+VVQNRKNDKGKQTSLNA YKKEMRE TIQRIARWFYDAGVPLNACTY+SFAPMIES
Sbjct: 131 NPESVVQNRKNDKGKQTSLNAAYKKEMREHTIQRIARWFYDAGVPLNACTYDSFAPMIES 190

Query: 121 IGQFGPGLKPPTYHELRVSCLKKELETTNELMRSHKAEWAKV 162
           IGQFGPGLKPPTYHELRV CLKKELE TNELM SHKAEWAKV
Sbjct: 191 IGQFGPGLKPPTYHELRVPCLKKELEATNELMSSHKAEWAKV 232

BLAST of IVF0016374 vs. NCBI nr
Match: KAA0047882.1 (hypothetical protein E6C27_scaffold133G001550 [Cucumis melo var. makuwa])

HSP 1 Score: 310 bits (794), Expect = 2.67e-99
Identity = 154/162 (95.06%), Postives = 157/162 (96.91%), Query Frame = 0

Query: 1   MSKKKEIKEQRNLIVDIDVQDYGIEDEDEGSISVNNRATSSGSSLKKPRQKGPMDAFFTP 60
           MSKKKEIKEQRNLIVDIDVQDYG+EDEDEGSISVNNRATSSGSSLKKPRQKGPMDAFFTP
Sbjct: 71  MSKKKEIKEQRNLIVDIDVQDYGMEDEDEGSISVNNRATSSGSSLKKPRQKGPMDAFFTP 130

Query: 61  NPETVVQNRKNDKGKQTSLNATYKKEMRERTIQRIARWFYDAGVPLNACTYNSFAPMIES 120
           NPE+VVQNRKNDKGKQTSLNA YKKEMRE TIQRIARWFYDAGVPLNACTY+SFAPMIES
Sbjct: 131 NPESVVQNRKNDKGKQTSLNAAYKKEMREHTIQRIARWFYDAGVPLNACTYDSFAPMIES 190

Query: 121 IGQFGPGLKPPTYHELRVSCLKKELETTNELMRSHKAEWAKV 162
           IGQFGPGLKPPTYHELRV CLKKELE TNELM SHKAEWAKV
Sbjct: 191 IGQFGPGLKPPTYHELRVPCLKKELEATNELMSSHKAEWAKV 232

BLAST of IVF0016374 vs. TAIR 10
Match: AT1G43260.1 (hAT transposon superfamily protein )

HSP 1 Score: 65.5 bits (158), Expect = 4.6e-11
Identity = 28/67 (41.79%), Postives = 39/67 (58.21%), Query Frame = 0

Query: 93  QRIARWFYDAGVPLNACTYNSFAPMIESIGQFGPGLKPPTYHELRVSCLKKELETTNELM 152
           Q +ARW Y  G+P NA   +    M+E  GQFGPG+ PP+ ++LR   LK+E+     LM
Sbjct: 37  QYVARWVYSHGIPFNAIANDDLRRMLEVAGQFGPGVTPPSQYQLREPLLKEEVVRMKGLM 96

Query: 153 RSHKAEW 160
              + EW
Sbjct: 97  EEQEDEW 103

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7SSR31.3e-85100.00BED-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E56... [more]
A0A5A7TY621.1e-8195.06BED-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C... [more]
A0A5D3BV421.1e-8195.06BED-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E56... [more]
A0A5A7V8P51.1e-8195.06BED-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C... [more]
A0A5D3DR781.1e-8195.06BED-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E56... [more]
Match NameE-valueIdentityDescription
KAA0032269.18.28e-109100.00uncharacterized protein E6C27_scaffold219G001030 [Cucumis melo var. makuwa] >TYK... [more]
KAA0053508.12.67e-10193.21uncharacterized protein E6C27_scaffold190G00650 [Cucumis melo var. makuwa][more]
KAA0066645.13.73e-10095.06uncharacterized protein E6C27_scaffold979G00720 [Cucumis melo var. makuwa][more]
TYK03327.11.49e-9995.06hypothetical protein E5676_scaffold6571G00020 [Cucumis melo var. makuwa][more]
KAA0047882.12.67e-9995.06hypothetical protein E6C27_scaffold133G001550 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
AT1G43260.14.6e-1141.79hAT transposon superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 138..158
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 33..47
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 61..75
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 26..75
NoneNo IPR availablePANTHERPTHR32166OSJNBA0013A04.12 PROTEINcoord: 34..161
NoneNo IPR availablePANTHERPTHR32166:SF33HAT DIMERIZATION DOMAIN-CONTAINING PROTEINcoord: 34..161

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0016374.1IVF0016374.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0046983 protein dimerization activity