IVF0016343 (gene) Melon (IVF77) v1

Overview
NameIVF0016343
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionS locus-related glycoprotein 1 binding pollen coat
Locationchr08: 16178473 .. 16178887 (+)
RNA-Seq ExpressionIVF0016343
SyntenyIVF0016343
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTTTGCAATTCACTCAACAAAATCAAGCTAGCACTTGCACCAAAAACATGGCAAACGTTTCTTCTTCTCGTGTCGCCATCATTATAGTTATCTTTGCAGGTTCTCTTCTACATATGAATTGAATTATATATTTTTATACGAGTTATTATTAAGAGATATTCATTTATATGCGTAATGCTTAATTATTTATTTTAATCTTGTGGCGGCTATGTAGTTTCAATGATTTTGGTACCGCAAGAAACCTCAGCTACAAAATGTCAAGACAGATTGTATGTTGGCGGGTGCACACAAAGTGATTGTGCGCATAAATGTAGTCAGCTACACCATGGTGGCACAGCTAAATGCATATCTACTGATCCTACGTTCACCAAGTATGCTTGTTATTGTTTCTATAATTGTCATGCAAATTGA

mRNA sequence

ATGTTTTTGCAATTCACTCAACAAAATCAAGCTAGCACTTGCACCAAAAACATGGCAAACGTTTCTTCTTCTCGTGTCGCCATCATTATAGTTATCTTTGCAGTTTCAATGATTTTGGTACCGCAAGAAACCTCAGCTACAAAATGTCAAGACAGATTGTATGTTGGCGGGTGCACACAAAGTGATTGTGCGCATAAATGTAGTCAGCTACACCATGGTGGCACAGCTAAATGCATATCTACTGATCCTACGTTCACCAAGTATGCTTGTTATTGTTTCTATAATTGTCATGCAAATTGA

Coding sequence (CDS)

ATGTTTTTGCAATTCACTCAACAAAATCAAGCTAGCACTTGCACCAAAAACATGGCAAACGTTTCTTCTTCTCGTGTCGCCATCATTATAGTTATCTTTGCAGTTTCAATGATTTTGGTACCGCAAGAAACCTCAGCTACAAAATGTCAAGACAGATTGTATGTTGGCGGGTGCACACAAAGTGATTGTGCGCATAAATGTAGTCAGCTACACCATGGTGGCACAGCTAAATGCATATCTACTGATCCTACGTTCACCAAGTATGCTTGTTATTGTTTCTATAATTGTCATGCAAATTGA

Protein sequence

MFLQFTQQNQASTCTKNMANVSSSRVAIIIVIFAVSMILVPQETSATKCQDRLYVGGCTQSDCAHKCSQLHHGGTAKCISTDPTFTKYACYCFYNCHAN
Homology
BLAST of IVF0016343 vs. ExPASy TrEMBL
Match: A0A0A0KYP7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G507400 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.9e-39
Identity = 84/99 (84.85%), Postives = 87/99 (87.88%), Query Frame = 0

Query: 1   MFLQFTQQNQASTCTKNMANVSSSRVAIIIVIFAVSMILVPQETSATKCQDRLYVGGCTQ 60
           MFLQFTQQNQA T TK MAN+SS RVAIIIVIFAVSMILVPQ TSA KCQDRLYVGGC Q
Sbjct: 1   MFLQFTQQNQACTRTKKMANLSSFRVAIIIVIFAVSMILVPQGTSALKCQDRLYVGGCIQ 60

Query: 61  SDCAHKCSQLHHGGTAKCISTDPTFTKYACYCFYNCHAN 100
            +C  KCSQLHHGGT+KCISTDPTFTKYACYCFYNC  N
Sbjct: 61  HECGQKCSQLHHGGTSKCISTDPTFTKYACYCFYNCPEN 99

BLAST of IVF0016343 vs. ExPASy TrEMBL
Match: A0A0A0LVZ5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G172580 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 6.1e-14
Identity = 40/79 (50.63%), Postives = 51/79 (64.56%), Query Frame = 0

Query: 18 MANVSSSRVAIIIVIFAVSMILVPQETSATKCQDRLYVGGCTQSDCAHKCSQLHHGGTAK 77
          M  + SS +  I++I AV+MI +PQ   A +CQD LY  GCT +DC  KC + HH  + +
Sbjct: 1  MTKLYSSWILTIVLIIAVAMISIPQGALAARCQDILYNSGCTLADCGQKCWEKHHEASRQ 60

Query: 78 CISTDPTFTKYACYCFYNC 97
          CI TDP  T YACYCFY C
Sbjct: 61 CIPTDPDQTIYACYCFYTC 79

BLAST of IVF0016343 vs. ExPASy TrEMBL
Match: A0A5A7THQ7 (S locus-related glycoprotein 1 binding pollen coat OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00450 PE=3 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.0e-13
Identity = 43/83 (51.81%), Postives = 53/83 (63.86%), Query Frame = 0

Query: 18  MANVSSSRVAIIIVIFAVSMILVPQETSAT-KCQDRLYVGGCTQSDCAHKCSQLHHGGTA 77
           M  + SS +  I +  AV+MILVPQ   A  +CQD+LY  GCT +DC  KC + HH  + 
Sbjct: 1   MTKLYSSWILTIALTIAVAMILVPQGALAVRRCQDKLYDTGCTLADCGQKCWEKHHDASH 60

Query: 78  KCISTDPTFTKYACYCFYNCHAN 100
           +CI TDP  T YACYCFYNC  N
Sbjct: 61  QCIPTDPGQTIYACYCFYNCGQN 83

BLAST of IVF0016343 vs. ExPASy TrEMBL
Match: A0A0A0L2R3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G576870 PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 6.3e-11
Identity = 36/77 (46.75%), Postives = 52/77 (67.53%), Query Frame = 0

Query: 21 VSSSRVAIIIVIFAVSMILVPQETSAT-KCQDRLYVGGCTQSDCAHKCSQLHHGGTAKCI 80
          + SSR+    +IFAV+++L  Q+ SA  +CQD LY  GC  +DC  KC + HH  + +CI
Sbjct: 1  MDSSRIICFALIFAVALLLASQDVSAAQRCQDVLYNTGCNLNDCGKKCWEKHHTVSHQCI 60

Query: 81 STDPTFTKYACYCFYNC 97
           T+P+ T YACYCF++C
Sbjct: 61 PTNPSQTIYACYCFFDC 77

BLAST of IVF0016343 vs. ExPASy TrEMBL
Match: A0A4Y1RT05 (Uncharacterized protein OS=Prunus dulcis OX=3755 GN=Prudu_019451 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.2e-06
Identity = 27/57 (47.37%), Postives = 35/57 (61.40%), Query Frame = 0

Query: 40  VPQETSATKCQDRLYVGGCTQSDCAHKCSQLHHGGTAKCISTDPTFTKYACYCFYNC 97
           VPQ  +  +C ++LY  GCT SDC  KC + HH    KCI+ +   T YACYC +NC
Sbjct: 57  VPQAYAQKRCDEQLYASGCTLSDCGKKCWEKHHDPGYKCIA-NVAQTDYACYCMFNC 112

BLAST of IVF0016343 vs. NCBI nr
Match: KGN64987.1 (hypothetical protein Csa_022748 [Cucumis sativus])

HSP 1 Score: 85.5 bits (210), Expect = 2.01e-19
Identity = 40/79 (50.63%), Postives = 51/79 (64.56%), Query Frame = 0

Query: 18 MANVSSSRVAIIIVIFAVSMILVPQETSATKCQDRLYVGGCTQSDCAHKCSQLHHGGTAK 77
          M  + SS +  I++I AV+MI +PQ   A +CQD LY  GCT +DC  KC + HH  + +
Sbjct: 1  MTKLYSSWILTIVLIIAVAMISIPQGALAARCQDILYNSGCTLADCGQKCWEKHHEASRQ 60

Query: 78 CISTDPTFTKYACYCFYNC 96
          CI TDP  T YACYCFY C
Sbjct: 61 CIPTDPDQTIYACYCFYTC 79

BLAST of IVF0016343 vs. NCBI nr
Match: KAA0042348.1 (S locus-related glycoprotein 1 binding pollen coat [Cucumis melo var. makuwa] >TYK15471.1 S locus-related glycoprotein 1 binding pollen coat [Cucumis melo var. makuwa])

HSP 1 Score: 84.3 bits (207), Expect = 6.22e-19
Identity = 43/83 (51.81%), Postives = 53/83 (63.86%), Query Frame = 0

Query: 18 MANVSSSRVAIIIVIFAVSMILVPQETSATK-CQDRLYVGGCTQSDCAHKCSQLHHGGTA 77
          M  + SS +  I +  AV+MILVPQ   A + CQD+LY  GCT +DC  KC + HH  + 
Sbjct: 1  MTKLYSSWILTIALTIAVAMILVPQGALAVRRCQDKLYDTGCTLADCGQKCWEKHHDASH 60

Query: 78 KCISTDPTFTKYACYCFYNCHAN 99
          +CI TDP  T YACYCFYNC  N
Sbjct: 61 QCIPTDPGQTIYACYCFYNCGQN 83

BLAST of IVF0016343 vs. NCBI nr
Match: KAE8649772.1 (hypothetical protein Csa_012405, partial [Cucumis sativus])

HSP 1 Score: 65.5 bits (158), Expect = 1.13e-11
Identity = 29/62 (46.77%), Postives = 42/62 (67.74%), Query Frame = 0

Query: 36 SMILVPQETSAT-KCQDRLYVGGCTQSDCAHKCSQLHHGGTAKCISTDPTFTKYACYCFY 95
          +++L  Q+ SA  +CQD LY  GC  +DC  KC + HH  + +CI T+P+ T YACYCF+
Sbjct: 1  ALLLASQDVSAAQRCQDVLYNTGCNLNDCGKKCWEKHHTISHQCIPTNPSQTIYACYCFF 60

BLAST of IVF0016343 vs. NCBI nr
Match: KGN52439.1 (hypothetical protein Csa_009048 [Cucumis sativus])

HSP 1 Score: 60.8 bits (146), Expect = 9.97e-10
Identity = 25/60 (41.67%), Postives = 37/60 (61.67%), Query Frame = 0

Query: 39 LVPQETSATKCQDRLYVGGCTQSDCAHKCSQLHHGGTAKCISTDPTFTKYACYCFYNCHA 98
          ++P   SATKC+ +LY  GC   DC  KCS  +   +++C++  P    Y+CYCFY+C A
Sbjct: 21 IMPNGVSATKCETKLY-DGCLPKDCTQKCSDKYPNSSSECVAVPPIPFHYSCYCFYDCAA 79

BLAST of IVF0016343 vs. NCBI nr
Match: BBH07492.1 (hypothetical protein Prudu_019451 [Prunus dulcis])

HSP 1 Score: 61.6 bits (148), Expect = 1.10e-09
Identity = 27/57 (47.37%), Postives = 35/57 (61.40%), Query Frame = 0

Query: 40  VPQETSATKCQDRLYVGGCTQSDCAHKCSQLHHGGTAKCISTDPTFTKYACYCFYNC 96
           VPQ  +  +C ++LY  GCT SDC  KC + HH    KCI+ +   T YACYC +NC
Sbjct: 57  VPQAYAQKRCDEQLYASGCTLSDCGKKCWEKHHDPGYKCIA-NVAQTDYACYCMFNC 112

BLAST of IVF0016343 vs. TAIR 10
Match: AT5G48905.1 (low-molecular-weight cysteine-rich 12 )

HSP 1 Score: 42.0 bits (97), Expect = 3.3e-04
Identity = 24/71 (33.80%), Postives = 38/71 (53.52%), Query Frame = 0

Query: 28 IIIVIFAVSMILVPQETSATKCQDRLYVG-GCTQSDCAHKC-SQLHHGGTAKCISTDPTF 87
          +++V+F+V + ++P+  +  +C+  L  G  C  + C   C  QL   G   CI   P  
Sbjct: 11 LLVVLFSV-LTIIPKTEAQKRCRQELEPGKQCVLAKCRELCFKQLK--GFGSCIEKPPGS 70

Query: 88 TKYACYCFYNC 97
          +KY C CFYNC
Sbjct: 71 SKYTCNCFYNC 78

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KYP71.9e-3984.85Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G507400 PE=3 SV=1[more]
A0A0A0LVZ56.1e-1450.63Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G172580 PE=3 SV=1[more]
A0A5A7THQ71.0e-1351.81S locus-related glycoprotein 1 binding pollen coat OS=Cucumis melo var. makuwa O... [more]
A0A0A0L2R36.3e-1146.75Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G576870 PE=3 SV=1[more]
A0A4Y1RT051.2e-0647.37Uncharacterized protein OS=Prunus dulcis OX=3755 GN=Prudu_019451 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
KGN64987.12.01e-1950.63hypothetical protein Csa_022748 [Cucumis sativus][more]
KAA0042348.16.22e-1951.81S locus-related glycoprotein 1 binding pollen coat [Cucumis melo var. makuwa] >T... [more]
KAE8649772.11.13e-1146.77hypothetical protein Csa_012405, partial [Cucumis sativus][more]
KGN52439.19.97e-1041.67hypothetical protein Csa_009048 [Cucumis sativus][more]
BBH07492.11.10e-0947.37hypothetical protein Prudu_019451 [Prunus dulcis][more]
Match NameE-valueIdentityDescription
AT5G48905.13.3e-0433.80low-molecular-weight cysteine-rich 12 [more]
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010851Defensin-like proteinPFAMPF07333SLR1-BPcoord: 44..96
e-value: 1.4E-7
score: 31.8

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0016343.1IVF0016343.1mRNA