IVF0016249 (gene) Melon (IVF77) v1

Overview
NameIVF0016249
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Locationchr09: 5720112 .. 5720276 (+)
RNA-Seq ExpressionIVF0016249
SyntenyIVF0016249
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAAATTGCGACGACATTGACGACGTGGACGGGGACTTCGCATATGCCACGACCACCGCTTTAAAAGACATTCAGTATATTGAGACCACAAATGAGTCGTCTCAGTGTCGCAACGAATTAGCTGAAGTGATGTTCACAGAATGGAAGTTGCGTAACGCTTAG

mRNA sequence

ATGACAAATTGCGACGACATTGACGACGTGGACGGGGACTTCGCATATGCCACGACCACCGCTTTAAAAGACATTCAGTATATTGAGACCACAAATGAGTCGTCTCAGTGTCGCAACGAATTAGCTGAAGTGATGTTCACAGAATGGAAGTTGCGTAACGCTTAG

Coding sequence (CDS)

ATGACAAATTGCGACGACATTGACGACGTGGACGGGGACTTCGCATATGCCACGACCACCGCTTTAAAAGACATTCAGTATATTGAGACCACAAATGAGTCGTCTCAGTGTCGCAACGAATTAGCTGAAGTGATGTTCACAGAATGGAAGTTGCGTAACGCTTAG

Protein sequence

MTNCDDIDDVDGDFAYATTTALKDIQYIETTNESSQCRNELAEVMFTEWKLRNA
Homology
BLAST of IVF0016249 vs. ExPASy TrEMBL
Match: A0A5D3BDZ0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold10G00280 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 6.3e-13
Identity = 43/55 (78.18%), Postives = 47/55 (85.45%), Query Frame = 0

Query: 1  MTNCDDIDDVD-GDFAYATTTALKDIQYIETTNESSQCRNELAEVMFTEWKLRNA 55
          MT CDDIDDVD GD AYATTTA +DI YIETTNE SQ R+ELAE MFT+W+LRNA
Sbjct: 1  MTYCDDIDDVDEGDSAYATTTASEDIHYIETTNEWSQWRDELAESMFTDWQLRNA 55

BLAST of IVF0016249 vs. ExPASy TrEMBL
Match: A0A5A7TKK3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold110G002520 PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 8.2e-13
Identity = 41/55 (74.55%), Postives = 48/55 (87.27%), Query Frame = 0

Query: 1   MTNCDDIDDVD-GDFAYATTTALKDIQYIETTNESSQCRNELAEVMFTEWKLRNA 55
           MT CDD+DD D GD  YATTTAL+DI+YIETTNE SQ R++LAE+MFTEW+LRNA
Sbjct: 308 MTYCDDVDDEDEGDSTYATTTALEDIKYIETTNEWSQWRDDLAELMFTEWQLRNA 362

BLAST of IVF0016249 vs. ExPASy TrEMBL
Match: A0A5D3BUL1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1734G00150 PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 8.2e-13
Identity = 41/55 (74.55%), Postives = 48/55 (87.27%), Query Frame = 0

Query: 1   MTNCDDIDDVD-GDFAYATTTALKDIQYIETTNESSQCRNELAEVMFTEWKLRNA 55
           MT CDD+DD D GD  YATTTAL+DI+YIETTNE SQ R++LAE+MFTEW+LRNA
Sbjct: 308 MTYCDDVDDEDEGDSTYATTTALEDIKYIETTNEWSQWRDDLAELMFTEWQLRNA 362

BLAST of IVF0016249 vs. ExPASy TrEMBL
Match: A0A5D3DCC0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold359G00310 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.8e-12
Identity = 41/55 (74.55%), Postives = 46/55 (83.64%), Query Frame = 0

Query: 1  MTNCDDIDDVD-GDFAYATTTALKDIQYIETTNESSQCRNELAEVMFTEWKLRNA 55
          MTNCDDIDDVD GD AY TTTA++DIQYIET N+ SQ R ELAE MF +W+LRNA
Sbjct: 1  MTNCDDIDDVDEGDSAYTTTTAVEDIQYIETKNKWSQWRGELAEAMFIKWQLRNA 55

BLAST of IVF0016249 vs. ExPASy TrEMBL
Match: A0A5A7V4Q8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G00240 PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.4e-12
Identity = 42/55 (76.36%), Postives = 46/55 (83.64%), Query Frame = 0

Query: 1   MTNCDDIDDVD-GDFAYATTTALKDIQYIETTNESSQCRNELAEVMFTEWKLRNA 55
           MT CDDIDD D GD  YATTTA +DIQYIETTNE SQ R++LAE MFTEW+LRNA
Sbjct: 53  MTYCDDIDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA 107

BLAST of IVF0016249 vs. NCBI nr
Match: KAA0054051.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ96871.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 82.4 bits (202), Expect = 2.90e-19
Identity = 43/55 (78.18%), Postives = 47/55 (85.45%), Query Frame = 0

Query: 1  MTNCDDIDDVD-GDFAYATTTALKDIQYIETTNESSQCRNELAEVMFTEWKLRNA 54
          MT CDDIDDVD GD AYATTTA +DI YIETTNE SQ R+ELAE MFT+W+LRNA
Sbjct: 1  MTYCDDIDDVDEGDSAYATTTASEDIHYIETTNEWSQWRDELAESMFTDWQLRNA 55

BLAST of IVF0016249 vs. NCBI nr
Match: KAA0036983.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK21222.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 80.9 bits (198), Expect = 1.18e-18
Identity = 41/55 (74.55%), Postives = 46/55 (83.64%), Query Frame = 0

Query: 1  MTNCDDIDDVD-GDFAYATTTALKDIQYIETTNESSQCRNELAEVMFTEWKLRNA 54
          MTNCDDIDDVD GD AY TTTA++DIQYIET N+ SQ R ELAE MF +W+LRNA
Sbjct: 1  MTNCDDIDDVDEGDSAYTTTTAVEDIQYIETKNKWSQWRGELAEAMFIKWQLRNA 55

BLAST of IVF0016249 vs. NCBI nr
Match: KAA0062284.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 80.5 bits (197), Expect = 6.57e-18
Identity = 42/55 (76.36%), Postives = 46/55 (83.64%), Query Frame = 0

Query: 1   MTNCDDIDDVD-GDFAYATTTALKDIQYIETTNESSQCRNELAEVMFTEWKLRNA 54
           MT CDDIDD D GD  YATTTA +DIQYIETTNE SQ R++LAE MFTEW+LRNA
Sbjct: 53  MTYCDDIDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA 107

BLAST of IVF0016249 vs. NCBI nr
Match: TYK11987.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 80.1 bits (196), Expect = 9.33e-18
Identity = 41/55 (74.55%), Postives = 46/55 (83.64%), Query Frame = 0

Query: 1   MTNCDDIDDVD-GDFAYATTTALKDIQYIETTNESSQCRNELAEVMFTEWKLRNA 54
           MT C+D+DD D GD  YATTTA +DIQYIETTNE SQ RN+LAE MFTEW+LRNA
Sbjct: 53  MTYCNDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWRNDLAESMFTEWQLRNA 107

BLAST of IVF0016249 vs. NCBI nr
Match: TYJ97711.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 78.2 bits (191), Expect = 1.39e-17
Identity = 40/55 (72.73%), Postives = 46/55 (83.64%), Query Frame = 0

Query: 1  MTNCDDIDDV-DGDFAYATTTALKDIQYIETTNESSQCRNELAEVMFTEWKLRNA 54
          MTNCDDID+V + D AYATTTA +DIQYI+TT E S  R+ELAE MFTEW+LRNA
Sbjct: 1  MTNCDDIDEVNERDSAYATTTATEDIQYIDTTTEWSNWRDELAEAMFTEWQLRNA 55

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BDZ06.3e-1378.18Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TKK38.2e-1374.55Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BUL18.2e-1374.55Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DCC01.8e-1274.55Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7V4Q82.4e-1276.36Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0054051.12.90e-1978.18retrotransposon protein [Cucumis melo var. makuwa] >TYJ96871.1 retrotransposon p... [more]
KAA0036983.11.18e-1874.55retrotransposon protein [Cucumis melo var. makuwa] >TYK21222.1 retrotransposon p... [more]
KAA0062284.16.57e-1876.36retrotransposon protein [Cucumis melo var. makuwa][more]
TYK11987.19.33e-1874.55retrotransposon protein [Cucumis melo var. makuwa][more]
TYJ97711.11.39e-1772.73retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0016249.1IVF0016249.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding