IVF0016246 (gene) Melon (IVF77) v1

Overview
NameIVF0016246
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTetratricopeptide-like helical
Locationchr07: 21420612 .. 21421001 (-)
RNA-Seq ExpressionIVF0016246
SyntenyIVF0016246
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGGTTTCTTTGGAAGCTTTGGCAATGGCTGGGATTGATTCCAATGAGTGGGGTATGGACGCTCAAGAATGGGAAAGAAACGAGATCGACGTTGTTCCACCACATTTATTAGCCGATGAAGAAGATGACGAGGATGGTGAATATGTAACGAGTACTATTAGTAACTATTGCTTTCGCGTTGATGGGTCCTTCGGGGGATGGCGTCGGAGAGATTGGAAAGCTGATGGTGCCCTTCGCATTTTGGGGATTTTTTATAGTCTAAGCAAAGTCATAGAGAAAAGGGCTTCTAATGGGATGAATTCAGTGAGAATAATAGTTAGAACTATTTTAGGGTTTTTGATGGTGATGACCATGAAGATAATTAGTGCACAAAGATCCAAGATGTAG

mRNA sequence

ATGTCGGTTTCTTTGGAAGCTTTGGCAATGGCTGGGATTGATTCCAATGAGTGGGGTATGGACGCTCAAGAATGGGAAAGAAACGAGATCGACGTTGTTCCACCACATTTATTAGCCGATGAAGAAGATGACGAGGATGGTGAATATGTAACGAGTACTATTAGTAACTATTGCTTTCGCGTTGATGGGTCCTTCGGGGGATGGCGTCGGAGAGATTGGAAAGCTGATGGTGCCCTTCGCATTTTGGGGATTTTTTATAGTCTAAGCAAAGTCATAGAGAAAAGGGCTTCTAATGGGATGAATTCAGTGAGAATAATAGTTAGAACTATTTTAGGGTTTTTGATGGTGATGACCATGAAGATAATTAGTGCACAAAGATCCAAGATGTAG

Coding sequence (CDS)

ATGTCGGTTTCTTTGGAAGCTTTGGCAATGGCTGGGATTGATTCCAATGAGTGGGGTATGGACGCTCAAGAATGGGAAAGAAACGAGATCGACGTTGTTCCACCACATTTATTAGCCGATGAAGAAGATGACGAGGATGGTGAATATGTAACGAGTACTATTAGTAACTATTGCTTTCGCGTTGATGGGTCCTTCGGGGGATGGCGTCGGAGAGATTGGAAAGCTGATGGTGCCCTTCGCATTTTGGGGATTTTTTATAGTCTAAGCAAAGTCATAGAGAAAAGGGCTTCTAATGGGATGAATTCAGTGAGAATAATAGTTAGAACTATTTTAGGGTTTTTGATGGTGATGACCATGAAGATAATTAGTGCACAAAGATCCAAGATGTAG

Protein sequence

MSVSLEALAMAGIDSNEWGMDAQEWERNEIDVVPPHLLADEEDDEDGEYVTSTISNYCFRVDGSFGGWRRRDWKADGALRILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLMVMTMKIISAQRSKM
Homology
BLAST of IVF0016246 vs. ExPASy TrEMBL
Match: A0A5D3CZU0 (Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00110 PE=4 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 2.6e-65
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0

Query: 1   MSVSLEALAMAGIDSNEWGMDAQEWERNEIDVVPPHLLADEEDDEDGEYVTSTISNYCFR 60
           MSVSLEALAMAGIDSNEWGMDAQEWERNEIDVVPPHLLADEEDDEDGEYVTSTISNYCFR
Sbjct: 1   MSVSLEALAMAGIDSNEWGMDAQEWERNEIDVVPPHLLADEEDDEDGEYVTSTISNYCFR 60

Query: 61  VDGSFGGWRRRDWKADGALRILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLMVMTMK 120
           VDGSFGGWRRRDWKADGALRILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLMVMTMK
Sbjct: 61  VDGSFGGWRRRDWKADGALRILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLMVMTMK 120

Query: 121 IISAQRSKM 130
           IISAQRSKM
Sbjct: 121 IISAQRSKM 129

BLAST of IVF0016246 vs. ExPASy TrEMBL
Match: A0A5A7TS68 (Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G004640 PE=4 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 4.8e-59
Identity = 117/118 (99.15%), Postives = 117/118 (99.15%), Query Frame = 0

Query: 1   MSVSLEALAMAGIDSNEWGMDAQEWERNEIDVVPPHLLADEEDDEDGEYVTSTISNYCFR 60
           MSVSLEALAMAGIDSNEWGMDAQEWERNEIDVVPPHLLADEEDDEDGEYVTSTISNYCFR
Sbjct: 1   MSVSLEALAMAGIDSNEWGMDAQEWERNEIDVVPPHLLADEEDDEDGEYVTSTISNYCFR 60

Query: 61  VDGSFGGWRRRDWKADGALRILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLMVMT 119
           VDGSFGGWRRRDWKADGA RILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLMVMT
Sbjct: 61  VDGSFGGWRRRDWKADGAHRILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLMVMT 118

BLAST of IVF0016246 vs. ExPASy TrEMBL
Match: A0A0A0KWE7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026810 PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 9.6e-52
Identity = 115/133 (86.47%), Postives = 118/133 (88.72%), Query Frame = 0

Query: 1   MSVSLEALAMAGIDSNEWGMDAQEWERNEIDVVPPHLLADEEDDEDGE--YVTSTISNYC 60
           MSVSLEALAMAGIDSNEW MDA+EWERNEIDVVPPHLLADEEDDEDG+    TSTISNYC
Sbjct: 1   MSVSLEALAMAGIDSNEWAMDAEEWERNEIDVVPPHLLADEEDDEDGDEHVTTSTISNYC 60

Query: 61  FRVDGSFGGWRRRDWKADG--ALRILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLMV 120
           F VDGSF GWR RD KADG     ILGIF SLSKVIEKRASNGM+SVRIIVRTILGFLMV
Sbjct: 61  FPVDGSFEGWRGRDCKADGGHGHGILGIFCSLSKVIEKRASNGMSSVRIIVRTILGFLMV 120

Query: 121 MTMKIISAQRSKM 130
           MTMKIISAQRSKM
Sbjct: 121 MTMKIISAQRSKM 133

BLAST of IVF0016246 vs. ExPASy TrEMBL
Match: A0A6J1FX98 (uncharacterized protein LOC111447880 OS=Cucurbita moschata OX=3662 GN=LOC111447880 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 3.0e-21
Identity = 65/129 (50.39%), Postives = 85/129 (65.89%), Query Frame = 0

Query: 1   MSVSLEALAMAGIDSNEWGMDAQEWERNEIDV-VPPHLLADEEDDEDGEYVTSTISNYCF 60
           MSVSLEALAMAGIDSNEW MDA+EWERNE++  +PPHLLADE+D+ED E  T   +  C 
Sbjct: 1   MSVSLEALAMAGIDSNEWAMDAEEWERNEMEKDIPPHLLADEDDEED-EMSTKFPATRC- 60

Query: 61  RVDGSFGGWRRRDWKADGALRILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLMVMTM 120
                     R+D    G      I + L K+ EKR  N ++S+ I+   ++GFLM MT+
Sbjct: 61  -------SCCRKDDGVGGVSCSPTIMWHLRKITEKRDLNCLSSMEIVTSAVVGFLMFMTI 120

Query: 121 KIISAQRSK 129
           KII+++RSK
Sbjct: 121 KIIASKRSK 120

BLAST of IVF0016246 vs. ExPASy TrEMBL
Match: A0A1Q3CWR7 (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_28116 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 2.0e-09
Identity = 33/59 (55.93%), Postives = 45/59 (76.27%), Query Frame = 0

Query: 1  MSVSLEALAMAGIDSNEWGMDAQEWERNEIDVV-PPHLLADEEDDEDGEYVTSTISNYC 59
          MSVSLEALAMAG+D NEWG+D +EWER +++ + PPHLLA+EE+    +Y    +S +C
Sbjct: 1  MSVSLEALAMAGLDYNEWGLDTEEWERKDLETMPPPHLLAEEEEIVKRDYSFHFMSRFC 59

BLAST of IVF0016246 vs. NCBI nr
Match: TYK16880.1 (Tetratricopeptide-like helical [Cucumis melo var. makuwa])

HSP 1 Score: 254 bits (650), Expect = 2.66e-85
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0

Query: 1   MSVSLEALAMAGIDSNEWGMDAQEWERNEIDVVPPHLLADEEDDEDGEYVTSTISNYCFR 60
           MSVSLEALAMAGIDSNEWGMDAQEWERNEIDVVPPHLLADEEDDEDGEYVTSTISNYCFR
Sbjct: 1   MSVSLEALAMAGIDSNEWGMDAQEWERNEIDVVPPHLLADEEDDEDGEYVTSTISNYCFR 60

Query: 61  VDGSFGGWRRRDWKADGALRILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLMVMTMK 120
           VDGSFGGWRRRDWKADGALRILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLMVMTMK
Sbjct: 61  VDGSFGGWRRRDWKADGALRILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLMVMTMK 120

Query: 121 IISAQRSKM 129
           IISAQRSKM
Sbjct: 121 IISAQRSKM 129

BLAST of IVF0016246 vs. NCBI nr
Match: KAA0044707.1 (Tetratricopeptide-like helical [Cucumis melo var. makuwa])

HSP 1 Score: 233 bits (595), Expect = 5.17e-77
Identity = 117/118 (99.15%), Postives = 117/118 (99.15%), Query Frame = 0

Query: 1   MSVSLEALAMAGIDSNEWGMDAQEWERNEIDVVPPHLLADEEDDEDGEYVTSTISNYCFR 60
           MSVSLEALAMAGIDSNEWGMDAQEWERNEIDVVPPHLLADEEDDEDGEYVTSTISNYCFR
Sbjct: 1   MSVSLEALAMAGIDSNEWGMDAQEWERNEIDVVPPHLLADEEDDEDGEYVTSTISNYCFR 60

Query: 61  VDGSFGGWRRRDWKADGALRILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLMVMT 118
           VDGSFGGWRRRDWKADGA RILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLMVMT
Sbjct: 61  VDGSFGGWRRRDWKADGAHRILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLMVMT 118

BLAST of IVF0016246 vs. NCBI nr
Match: KAG7015383.1 (hypothetical protein SDJN02_23018, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 153 bits (387), Expect = 3.40e-45
Identity = 89/130 (68.46%), Postives = 98/130 (75.38%), Query Frame = 0

Query: 1   MSVSLEALAMAGIDSNEWGMDAQEWERNEIDV-VPPHLLADEEDDEDGEYVTSTISNYCF 60
           MSVSLEALAMAGI SNEW MDA+EWERNEI+  VPPHLLADE+DD+D   VTST+SNY F
Sbjct: 1   MSVSLEALAMAGITSNEWAMDAEEWERNEIENDVPPHLLADEDDDDDN--VTSTVSNYSF 60

Query: 61  RVDGSFGGWRRRDWKADGALRILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLMVMTM 120
            V G F    R D  AD      GI  SLSK +EKRASNGM+SVRIIVRTILGFL+V  +
Sbjct: 61  PVAGFFDSLHREDGGADDIHCFWGILCSLSKSLEKRASNGMSSVRIIVRTILGFLLVKIL 120

Query: 121 KIISAQRSKM 129
           KIISA  S M
Sbjct: 121 KIISAHTSNM 128

BLAST of IVF0016246 vs. NCBI nr
Match: KAG6577295.1 (hypothetical protein SDJN03_24869, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 152 bits (385), Expect = 6.85e-45
Identity = 89/130 (68.46%), Postives = 98/130 (75.38%), Query Frame = 0

Query: 1   MSVSLEALAMAGIDSNEWGMDAQEWERNEIDV-VPPHLLADEEDDEDGEYVTSTISNYCF 60
           MSVSLEALAMAGI SNEW MDA+EWERNEI+  VPPHLLADE+DD+D   VTST+SNY F
Sbjct: 1   MSVSLEALAMAGITSNEWAMDAEEWERNEIENDVPPHLLADEDDDDDN--VTSTVSNYSF 60

Query: 61  RVDGSFGGWRRRDWKADGALRILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLMVMTM 120
            V G F   RR D  A       GI  SLSK +EKRASNGM+SVRIIVRTILGFL+V  +
Sbjct: 61  PVAGFFDSLRREDGGAHDIHCFWGILCSLSKSLEKRASNGMSSVRIIVRTILGFLLVKIL 120

Query: 121 KIISAQRSKM 129
           KIISA  S M
Sbjct: 121 KIISAHTSNM 128

BLAST of IVF0016246 vs. NCBI nr
Match: XP_022943015.1 (uncharacterized protein LOC111447880 [Cucurbita moschata])

HSP 1 Score: 108 bits (270), Expect = 1.49e-27
Identity = 65/129 (50.39%), Postives = 85/129 (65.89%), Query Frame = 0

Query: 1   MSVSLEALAMAGIDSNEWGMDAQEWERNEIDV-VPPHLLADEEDDEDGEYVTSTISNYCF 60
           MSVSLEALAMAGIDSNEW MDA+EWERNE++  +PPHLLADE+D+ED E  T   +  C 
Sbjct: 1   MSVSLEALAMAGIDSNEWAMDAEEWERNEMEKDIPPHLLADEDDEED-EMSTKFPATRCS 60

Query: 61  RVDGSFGGWRRRDWKADGALRILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLMVMTM 120
                     R+D    G      I + L K+ EKR  N ++S+ I+   ++GFLM MT+
Sbjct: 61  CC--------RKDDGVGGVSCSPTIMWHLRKITEKRDLNCLSSMEIVTSAVVGFLMFMTI 120

Query: 121 KIISAQRSK 128
           KII+++RSK
Sbjct: 121 KIIASKRSK 120

BLAST of IVF0016246 vs. TAIR 10
Match: AT2G22320.1 (unknown protein; Has 7 Blast hits to 7 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 51.2 bits (121), Expect = 7.1e-07
Identity = 25/44 (56.82%), Postives = 32/44 (72.73%), Query Frame = 0

Query: 5  LEALAMAGIDSNEWGMDAQEWERNEIDVVPPHLLADEEDDEDGE 49
          +EALAMAG+D  EWG+  +EWE  E  VVP HLLAD+  +E+ E
Sbjct: 1  MEALAMAGVDYQEWGLSIEEWELQE-SVVPLHLLADDFKEEEQE 43

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CZU02.6e-65100.00Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A5A7TS684.8e-5999.15Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
A0A0A0KWE79.6e-5286.47Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026810 PE=4 SV=1[more]
A0A6J1FX983.0e-2150.39uncharacterized protein LOC111447880 OS=Cucurbita moschata OX=3662 GN=LOC1114478... [more]
A0A1Q3CWR72.0e-0955.93Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_28116 PE=4... [more]
Match NameE-valueIdentityDescription
TYK16880.12.66e-85100.00Tetratricopeptide-like helical [Cucumis melo var. makuwa][more]
KAA0044707.15.17e-7799.15Tetratricopeptide-like helical [Cucumis melo var. makuwa][more]
KAG7015383.13.40e-4568.46hypothetical protein SDJN02_23018, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6577295.16.85e-4568.46hypothetical protein SDJN03_24869, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022943015.11.49e-2750.39uncharacterized protein LOC111447880 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
AT2G22320.17.1e-0756.82unknown protein; Has 7 Blast hits to 7 proteins in 4 species: Archae - 0; Bacter... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0016246.1IVF0016246.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane