IVF0016227 (gene) Melon (IVF77) v1

Overview


Name	IVF0016227
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	RNA-dependent RNA polymerase
Location	chr03: 23217543 .. 23224143 (-)
RNA-Seq Expression	IVF0016227
Synteny	IVF0016227

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGCTATTGGCCCGACCGTCCCAAGGAAAGAAAAACTTGGAAAAGGAAGTATATAACGAAATATTGAAGCAGTTTGAAGAAAAATGTGGAAAGCCACCGGAAGTTGCCGCGCCGTCGAAAGATTTTGCCGGGTCGATTTCCTTTTCCTTTGTATTACGTTTTAGGGTTACTTTTACTAAAGGTCAATTCCGACATTACATAGGCCAATTTGTTCAAAAATCTCGATCTTGAAAATTGTCCAAAAGATTTTTAATCCTCTTGTCATATTCCCATTACTTTGTACAATTGTAAGAAGAGCAAAGCAAAAGCACATAGTCATGGGTATGAAGACCGCATCGCTCTCGGTCAATATTCCACCATAAATTATTACTTCACTCCTAAACCTTACTCAAGAAGCTACCCACCCGTACATATCAGCTTATATATTTAAAATCTTAATGGTCTCAGCAATCTGCAAAGATTTCTGATTCTTGCGAGTAGCAGTTAGAGGAACCCAAATTCGCAAGTTATTGTTTTTATTTATTTATTTAAGGTTAGTCGTTTCAATTTATCAAGAACGTCCTTTCTTTTTCACTTTAAGAATTTGGGGTTTTTTGATATTGTTTGAAACTCTGTTTGGTAAAATGTGAGGTAAGAAATGGGTGAAACTGTTTGATGTTTATCCTATGATGGGTTGTTTGGTGGGGTAGAAATGTTTAGAATAAGATTGTAGTTTATGGATTGTTCGTTGTTTGATAATTGTAATGTGGTTTAACCTTTTCGTTTGATCAACATTCACAAATATGTACAAGCCCCATGGTTGTTAGTGCCACCACCTTTCCATAAGAGAATGTTGTACTGTTTGATTTTTAGTAGAAGAACTGCAGGAAGGGGGATGGAATCTCGGGTCTTTAGAGACCGGAGGTTATGGGAATACCACTGACGTACTCTTTGATAGTTAATTTCTTGAAAATCGTAAACATGTGCTTAATTCTTGTTCAGATACTCGTTTCATGGTATGCTCTCAGTCTTAGCCAACTCACGGAGAAGATTACCGAGGCTGTCATAGGAATGCAATGTTTTTTAGTGACCACTGACGTACTCTTTGATAGTTAATTTCTTGAAAATCGTAAACATGTGCTTAATTCTTGTTCAGATACTCGTTTCATGGTATGCTCTCAGTCTTAGCCAACTCACGGAGAAGATTACCGAGGCTGTCATAGGAATGCAATGTTTTTTAGTGACCATCATTTTTGTTTTGCTAACATGTTCTCAATAAACAGCTCAGTTTGGATTTCACTCATTCTGAAAAGGATCTATTTGTTGACATCATGACAAAGCTTTTACAAACTAAGACGTTTTCCTAGCCTGCTAACAAGGATCACAGTCCTTTCCTGTTTACGTGTGAGAGGTGATAGCAGGTAGCAATGCTTTACCACAATATTCTTTTAGTGCAGTTCATTTTTTATTATGTTAATGTGTGAAGCTGGTTTCTTTTTGTTATAAAGTTCTTGCTCAATTGTAGTATTACAAGTGTTATATATATATATATAATACTGGCACATTAACGTTTGGTGGAAATTCTGATACCTTGGAAGTTGGAAGAGTTAACTATGAGAATATCATATGACTAGAGAGAACTAATTTTTTCTTTTTTCGTGTGTGTGTGTGGGTGGGGGACATGGCATTGCTAAAACAGTTCTGAAAGAAATTATGTTCAAATCCCTGAAATGTTTTGTTTTATAATAGTTCATGGCTATGGAAGGTCTACATGAAAGAGGGATAGAAAATGAGACTGAAAAAACTTATAAATTTCCTCGTACAAGAATGCGCTGCACGAGTTGATCCCTACGTACCAGTTCATATGTTTAGTTTTTCTCAGGAAACTTTTTAAGTTTTGTTCATGAAATAAAAAAATTATATATAAAATTATTTTGAAAAAATCAACAAGCATCTCTCTCTCTCTCTCTAAAAGAGTCTATTGTCCAAAATACAAGAAAGAAAATTTGAAAAATCTTGCAACTAAAAGATGAAATAAGATAAAACCGAAAAGTTAAACCTTTCATATTCAAACTAATGTCCTGGATAGAACAACCATTCCTGGAGAAACTATTTACTTTTCTGCATGGAGGCTATTCTCTTTCTTTTAAGATTTGGTAGATAAAAATTTACGTTTCTCCCTATTTAGCCTACTTCACAACTGCGGGGAGGCAGTTTTTGGAATTTTTGCCCTGTATGTATGACTTTACATGCAAGAAATCTGTTATGGGCAATTATTACTGACAACTTGAGGGTGAACTTCAACCCTCAGTTTTCTGGAGTTATTGATGGAACGGTTTTTTATTATTATTTCATTATTTTATTTTATTTATGTATTCTGTGCTCATCAACTTAAGATTTTGTTTATAAAATAAAATCTCTCAACTAATTTATTGCGTATTATGAGGAATTGAAATTACCTTCTCTTTTTCTCAGTCAGAGAAATAAATGGGATCAGAAGAAAGTGAAAAGATAGTGGTAACTCAAGTAAGCTTTGGCGGATTTGACAGTGATGTTAAAGCTAGAGATCTTATGAGTTATCTGGAATCCGAGATTGGGCTTGTGGACAGATGTAGATTGAAAACTTCTTGGACTCCTCCAGAATCATACCCAGATTTTGAAGTCAGCAATGTTGCTAATGTTATAAAATCTGATGATTACAAGAAGGTGGTGCCTCATGCATTTGTGCATTTTGTCTCACCTGACTCTGCTGCTGAGGCTCTACATGCTGCAGGTCGTGGCGAGCTTCTTTTTAACGGTAAATTGTTGAAGGCGAGTTTGGGGCCTGAGAGTCCTTTTCATATAAATCAGAGGCGAAGGACTAAGGTTCCCTTTAAGTTATCTGATGTGCAAGTTGATATAGGGAACTTAACTTGTCATGATGGGTTTTCAGTTGCTTGGAGAGGGCCTTCGAGTGGAATGGATTTTCTAGTGGATCCCTTTGATGGAACCTGTAAATTTTGTTTCACGAAGGATACTGCATTCTCTTTTAAAGATAACAACAAGTATACAGTTTTGAAGTGTGATTACAAATTGGAGTTCATAGTGAGGGACATTAATCAGATCAAAAGATATACGGATACATCATGTTATGTTATTCTCTTGCAGCTTACATCATCACCCTGCATTTGGTATAGAACAGCAGATGATGATATTGCTAAATCAGTTCCATATGATTTGTTGGATGATGATGATCCATGGATCCGGACAACAGATTTCACGATTAGTGGAGCTATTGGTCGTTGTAATACTTTCAGAGTTTCAGTCCCACCCCGCTATGGCATCAAGCTGAATAATGCCATGAATTATCTAAAAGAACAAAGAGTTCACCAGGTCTCCCTCAACCGGCCTCCCAAGATCCTGAATGAACCAGATTATGGTGTGCAAATGACCGATCACTTCTTTTGCATCTTTTATAAAGAAGACATATCCTTTGAGATATTATTTCTGGTAAATGCCGTAATGCACAAAGGGATAATCAACCAACACCAAATGTCTGATAGATTTTTTGATTTGCTAAGAAACCAGCCCAATGAAGTTAATTTGGCTGCTTTAAGTCATATTCATTCTTATAGACGTCCTGTGTTGGATGCCTGTAAGAAGCTAAAACTTGTACAAGAATGGTTGTTGAAGAACCCTACGCTTTGGAAAAGATCTAAAGAGCTGGTAGATATCGTTGAAATCAGGAGATTAGTAATAACTCCTTCAAAAGCATATTGCTTTCCACCTGAAGTTGAACTGTCCAATAGGGTTTTGAGAAGATACAAGGATGTTGCCGATAGGTTCCTCAGGGTTACCTTCATGGATGAAGGCATGAAGAAAATCAATTCACATGTTTATACCTATTATGTTGCCCCCATAGTAAAGGAAATTACTTCAAGCTCCTTTCCCCAGAAGACCAAAATATTTGCAAGGATGAAACATATTCTGAAACATGGATTTCACTTGTGTGGTAGGAAATACTCCTTTTTGGCGTATTCATCCAACCAACTGAGGGACCAATCAGCTTGGTTCTTTGCTGAATGCAAAAATATAAGTGTTGATGGTATTTTGGGTTGGATGGGGAAATTTACCAATAAAAATGTTGCCAAGTGTGCTGCTAGAATTGGTCAGTGCTTTTCATCTACTTATGCAACAATTGAAGTTCCAAGAAACATGGTCAATCACAATCTTCAGGATGTTGAGAGGAATGGATATGTTTTCTCTGATGGGATTGGAACCATTACTCCTGATCTTGCGCAGGAAGTTGCAGACAAACTAAAAATGGATGGGAGCCTGCCCTGCGCTTACCAAATTAGATATGCAGGTTACAAAGGTGTTGTTGCCACTTGGCCATCCAAGGAGGACGGGATCAGACTTGCTTTAAGGCCAAGCATGAATAAATTTGAATCAGATCATAGAATCTTGGAGATCTGTTCATGGACTAGATTTCAGCCAGGTTTTCTTAATAGGCAGATTATAACCCTCCTTTCTACACTAAGTGTTCCTGATGAAATTTTCTGGAGTATGCAGGAGACTATGATTTCAAAACTGGATAGAATGATCACCGATACAGATGTGGCTTTTGAAGTTCTCACTGCATCCTGTGCCGAGCAAGGAAATGCAGCGGCAATTATGTTGAGTGCTGGTTTTGAACCTCGAACCGAACCTCATCTAAGGGGCATGCTAATGTGTATAAGAGCAGCACAGCTGTGGGGCCTTCGGGAAAAAGCTAGGATTTTTGTTACTGAGGGGAGGTGGTGTATGGGGTGTTTCGACGAGAGCGGCGTGTTACAAGAAGGCCAATGCTTCATCCAAGTATCCACTCCATTGCTTGAGAAGTGTTTCTCCAAGCATGGGTCTCTCTTTGCTGAGACAAAGAACAATCTTACTGTGGTAAGAGGGACTGTAGTCATAGCGAAAAATCCGTGCCTTCATCCAGGAGATGTGAGAATTCTCGAAGCAGTTGATGCTCCCGAGTTGCATCATTTGTACGATTGCCTCGTGTTTCCTCAAAATGGTGAACGACCCCATACCAATGAAGCTTCTGGAAGTGATTTGGATGGCGATCTCTACTTCACTACTTGGGATGAAAATCTTATTCCACCTAGTAAAAAAAGTTGGCCACCTATGGAGTATGCTCCAGCGGATGTAAAGACTCTTCAACGTAAAATTACTCGATTGGTATTGTCCTCCAACTCAACTTTTTTTACCCTATGGTTGTTCTTCATTACCTGCATGCATTATTCTTTAATTCTTTAACCTCTTTACATGAACTAGAATGCCTACGCTGTTTCTTTTATTCTATATTGATATTAACTTTTCTTCGTCATTTTCTTTGTTTGACCGTATAGAAAGAATGTGGTTTAATTGTGGTAACATATCTAGATCATTAAGCAAGTGTGACTAAATTATCTTCCGACATATTTTATTGTATTTATCTTATCGTTTTATAGGATATAATGGAGTTCTTTGCGAAAAATATGATCAATGAGAGTCTGGGGACAATATGCAATGCGCATGTTGTTCATGCTGACCGCAGCAAGTATGGAGCTTTGGATGAGAACTGTATTCAATTATCTGAATTAGCTGCCACAGCTGTTGATTTCCCCAAGACAGGGAAGATCGTGACCATGCCTCCCCATTTAAAACCAAAACTATATCCAGATTTTATGGGAAAGGAAGCTACTCAATCATACAAGTCCACCAAAATTCTAGGAAAAATGTACCGCCGAATTAGAGATGCGTATGATGATGATGATATGATCACATCACGTGAGCTAAATTTTACTCCTGGCGATGTCCATTATGATGTAGACCTCGAAGTGGCAGGAGCAGAAGATTTCATTGCAGAAGCATGGAATCAAAAATGCTCATACGATGGTCAGCTGAGCGGTTTACTGGGACAATATAAAGTTAATAGGGAAGAAGAAATTGTCACTGGACATATTTGGTCCATGCCAAAGTACGTTAGTAGGAAGCAAGGAGAGCTGAAGGAGAAGCTTAAGCATTCTTATAGCACTCTTAAGAAAGATTTCAGGCAAGTTTTTGAGAATATTGGGCCAGAGTTTGAGCAACTCACTTGTGATGAAAGGAATGCATTTTATGAAAAAAAGGCATCTGCCTGGTATCAGGTGGCATACCATCCGACTTGGTTGAAGAAATCATTGGAGCTGCGAGAACCCGACGCGCCTGAGGCCATCCCGATGTTAAGCTTTCCTTGGATTGCTGCCGATTATCTTGCACGAATCAAAATCAAATGCAGGCGGATGAAAAGTTTTGACCCAACAAAGCCGATTAACTCTTTGGTGAGTTATCTCTCTGAACGAATATGAACATCACGAAGGGCTCTCGCACTTTTGTAGCTGATTTAGATAATCTGGCTGCAAGACCACTCTGCCAGTATAGAACATGGTTGTATGTAAACTTGTTGTAGCCTGTCATGTAGCAGTAGCACTATCGAGTTGGATTGTACTATAAATTCTGAAGTTGCGTTCCTTGAAACAATATTGCCATTTATATTTCTGAAAGTTCAAGATGTTTGCAGGAAAGGGGTAAACTATTTTTTTTTCTCTTTCTTAGCATTTTTTAATTTTTTTCCGAC

mRNA sequence

TTGCTATTGGCCCGACCGTCCCAAGGAAAGAAAAACTTGGAAAAGGAAGTATATAACGAAATATTGAAGCAGTTTGAAGAAAAATGTGGAAAGCCACCGGAAGTTGCCGCGCCGTCGAAAGATTTTGCCGGGTCGATTTCCTTTTCCTTTGTATTACGTTTTAGGGTTACTTTTACTAAAGGTCAATTCCGACATTACATAGGCCAATTTGTTCAAAAATCTCGATCTTGAAAATTGTCCAAAAGATTTTTAATCCTCTTGTCATATTCCCATTACTTTGTACAATTGTAAGAAGAGCAAAGCAAAAGCACATAGTCATGGGTATGAAGACCGCATCGCTCTCGGTCAATATTCCACCATAAATTATTACTTCACTCCTAAACCTTACTCAAGAAGCTACCCACCCGTACATATCAGCTTATATATTTAAAATCTTAATGGTCTCAGCAATCTGCAAAGATTTCTGATTCTTGCGAGTAGCAGTTAGAGGAACCCAAATTCGCAAGTTATTGTTTTTATTTATTTATTTAAGGTTAGTCGTTTCAATTTATCAAGAACGTCCTTTCTTTTTCACTTTAAGAATTTGGGGTTTTTTGATATTGTTTGAAACTCTGTTTGGTAAAATGTGAGGTAAGAAATGGGTGAAACTGTTTGATGTTTATCCTATGATGGGTTGTTTGGTGGGGTAGAAATGTTTAGAATAAGATTGTAGTTTATGGATTGTTCGTTGTTTGATAATTGTAATGTGGTTTAACCTTTTCGTTTGATCAACATTCACAAATATGTACAAGCCCCATGGTTGTTAGTGCCACCACCTTTCCATAAGAGAATGTTGTACTGTTTGATTTTTAGTAGAAGAACTGCAGGAAGGGGGATGGAATCTCGGGTCTTTAGAGACCGGAGGTTATGGGAATACCACTGACGTACTCTTTGATAGTTAATTTCTTGAAAATCGTAAACATGTGCTTAATTCTTGTTCAGATACTCGTTTCATGGTATGCTCTCAGTCTTAGCCAACTCACGGAGAAGATTACCGAGGCTGTCATAGGAATGCAATGTTTTTTAGTGACCACTGACGTACTCTTTGATAGTTAATTTCTTGAAAATCGTAAACATGTGCTTAATTCTTGTTCAGATACTCGTTTCATGGTATGCTCTCAGTCTTAGCCAACTCACGGAGAAGATTACCGAGGCTGTCATAGGAATGCAATGTTTTTTAGTGACCATCATTTTTGTTTTGCTAACATGTTCTCAATAAACAGCTCAGTTTGGATTTCACTCATTCTGAAAAGGATCTATTTGTTGACATCATGACAAAGCTTTTACAAACTAAGACGTTTTCCTAGCCTGCTAACAAGGATCACAGTCCTTTCCTGTTTACGTGTGAGAGGTGATAGCAGTCAGAGAAATAAATGGGATCAGAAGAAAGTGAAAAGATAGTGGTAACTCAAGTAAGCTTTGGCGGATTTGACAGTGATGTTAAAGCTAGAGATCTTATGAGTTATCTGGAATCCGAGATTGGGCTTGTGGACAGATGTAGATTGAAAACTTCTTGGACTCCTCCAGAATCATACCCAGATTTTGAAGTCAGCAATGTTGCTAATGTTATAAAATCTGATGATTACAAGAAGGTGGTGCCTCATGCATTTGTGCATTTTGTCTCACCTGACTCTGCTGCTGAGGCTCTACATGCTGCAGGTCGTGGCGAGCTTCTTTTTAACGGTAAATTGTTGAAGGCGAGTTTGGGGCCTGAGAGTCCTTTTCATATAAATCAGAGGCGAAGGACTAAGGTTCCCTTTAAGTTATCTGATGTGCAAGTTGATATAGGGAACTTAACTTGTCATGATGGGTTTTCAGTTGCTTGGAGAGGGCCTTCGAGTGGAATGGATTTTCTAGTGGATCCCTTTGATGGAACCTGTAAATTTTGTTTCACGAAGGATACTGCATTCTCTTTTAAAGATAACAACAAGTATACAGTTTTGAAGTGTGATTACAAATTGGAGTTCATAGTGAGGGACATTAATCAGATCAAAAGATATACGGATACATCATGTTATGTTATTCTCTTGCAGCTTACATCATCACCCTGCATTTGGTATAGAACAGCAGATGATGATATTGCTAAATCAGTTCCATATGATTTGTTGGATGATGATGATCCATGGATCCGGACAACAGATTTCACGATTAGTGGAGCTATTGGTCGTTGTAATACTTTCAGAGTTTCAGTCCCACCCCGCTATGGCATCAAGCTGAATAATGCCATGAATTATCTAAAAGAACAAAGAGTTCACCAGGTCTCCCTCAACCGGCCTCCCAAGATCCTGAATGAACCAGATTATGGTGTGCAAATGACCGATCACTTCTTTTGCATCTTTTATAAAGAAGACATATCCTTTGAGATATTATTTCTGGTAAATGCCGTAATGCACAAAGGGATAATCAACCAACACCAAATGTCTGATAGATTTTTTGATTTGCTAAGAAACCAGCCCAATGAAGTTAATTTGGCTGCTTTAAGTCATATTCATTCTTATAGACGTCCTGTGTTGGATGCCTGTAAGAAGCTAAAACTTGTACAAGAATGGTTGTTGAAGAACCCTACGCTTTGGAAAAGATCTAAAGAGCTGGTAGATATCGTTGAAATCAGGAGATTAGTAATAACTCCTTCAAAAGCATATTGCTTTCCACCTGAAGTTGAACTGTCCAATAGGGTTTTGAGAAGATACAAGGATGTTGCCGATAGGTTCCTCAGGGTTACCTTCATGGATGAAGGCATGAAGAAAATCAATTCACATGTTTATACCTATTATGTTGCCCCCATAGTAAAGGAAATTACTTCAAGCTCCTTTCCCCAGAAGACCAAAATATTTGCAAGGATGAAACATATTCTGAAACATGGATTTCACTTGTGTGGTAGGAAATACTCCTTTTTGGCGTATTCATCCAACCAACTGAGGGACCAATCAGCTTGGTTCTTTGCTGAATGCAAAAATATAAGTGTTGATGGTATTTTGGGTTGGATGGGGAAATTTACCAATAAAAATGTTGCCAAGTGTGCTGCTAGAATTGGTCAGTGCTTTTCATCTACTTATGCAACAATTGAAGTTCCAAGAAACATGGTCAATCACAATCTTCAGGATGTTGAGAGGAATGGATATGTTTTCTCTGATGGGATTGGAACCATTACTCCTGATCTTGCGCAGGAAGTTGCAGACAAACTAAAAATGGATGGGAGCCTGCCCTGCGCTTACCAAATTAGATATGCAGGTTACAAAGGTGTTGTTGCCACTTGGCCATCCAAGGAGGACGGGATCAGACTTGCTTTAAGGCCAAGCATGAATAAATTTGAATCAGATCATAGAATCTTGGAGATCTGTTCATGGACTAGATTTCAGCCAGGTTTTCTTAATAGGCAGATTATAACCCTCCTTTCTACACTAAGTGTTCCTGATGAAATTTTCTGGAGTATGCAGGAGACTATGATTTCAAAACTGGATAGAATGATCACCGATACAGATGTGGCTTTTGAAGTTCTCACTGCATCCTGTGCCGAGCAAGGAAATGCAGCGGCAATTATGTTGAGTGCTGGTTTTGAACCTCGAACCGAACCTCATCTAAGGGGCATGCTAATGTGTATAAGAGCAGCACAGCTGTGGGGCCTTCGGGAAAAAGCTAGGATTTTTGTTACTGAGGGGAGGTGGTGTATGGGGTGTTTCGACGAGAGCGGCGTGTTACAAGAAGGCCAATGCTTCATCCAAGTATCCACTCCATTGCTTGAGAAGTGTTTCTCCAAGCATGGGTCTCTCTTTGCTGAGACAAAGAACAATCTTACTGTGGTAAGAGGGACTGTAGTCATAGCGAAAAATCCGTGCCTTCATCCAGGAGATGTGAGAATTCTCGAAGCAGTTGATGCTCCCGAGTTGCATCATTTGTACGATTGCCTCGTGTTTCCTCAAAATGGTGAACGACCCCATACCAATGAAGCTTCTGGAAGTGATTTGGATGGCGATCTCTACTTCACTACTTGGGATGAAAATCTTATTCCACCTAGTAAAAAAAGTTGGCCACCTATGGAGTATGCTCCAGCGGATGTAAAGACTCTTCAACGTAAAATTACTCGATTGGATATAATGGAGTTCTTTGCGAAAAATATGATCAATGAGAGTCTGGGGACAATATGCAATGCGCATGTTGTTCATGCTGACCGCAGCAAGTATGGAGCTTTGGATGAGAACTGTATTCAATTATCTGAATTAGCTGCCACAGCTGTTGATTTCCCCAAGACAGGGAAGATCGTGACCATGCCTCCCCATTTAAAACCAAAACTATATCCAGATTTTATGGGAAAGGAAGCTACTCAATCATACAAGTCCACCAAAATTCTAGGAAAAATGTACCGCCGAATTAGAGATGCGTATGATGATGATGATATGATCACATCACGTGAGCTAAATTTTACTCCTGGCGATGTCCATTATGATGTAGACCTCGAAGTGGCAGGAGCAGAAGATTTCATTGCAGAAGCATGGAATCAAAAATGCTCATACGATGGTCAGCTGAGCGGTTTACTGGGACAATATAAAGTTAATAGGGAAGAAGAAATTGTCACTGGACATATTTGGTCCATGCCAAAGTACGTTAGTAGGAAGCAAGGAGAGCTGAAGGAGAAGCTTAAGCATTCTTATAGCACTCTTAAGAAAGATTTCAGGCAAGTTTTTGAGAATATTGGGCCAGAGTTTGAGCAACTCACTTGTGATGAAAGGAATGCATTTTATGAAAAAAAGGCATCTGCCTGGTATCAGGTGGCATACCATCCGACTTGGTTGAAGAAATCATTGGAGCTGCGAGAACCCGACGCGCCTGAGGCCATCCCGATGTTAAGCTTTCCTTGGATTGCTGCCGATTATCTTGCACGAATCAAAATCAAATGCAGGCGGATGAAAAGTTTTGACCCAACAAAGCCGATTAACTCTTTGGTGAGTTATCTCTCTGAACGAATATGAACATCACGAAGGGCTCTCGCACTTTTGTAGCTGATTTAGATAATCTGGCTGCAAGACCACTCTGCCAGTATAGAACATGGTTGTATGTAAACTTGTTGTAGCCTGTCATGTAGCAGTAGCACTATCGAGTTGGATTGTACTATAAATTCTGAAGTTGCGTTCCTTGAAACAATATTGCCATTTATATTTCTGAAAGTTCAAGATGTTTGCAGGAAAGGGGTAAACTATTTTTTTTTCTCTTTCTTAGCATTTTTTAATTTTTTTCCGAC

Coding sequence (CDS)

ATGGGATCAGAAGAAAGTGAAAAGATAGTGGTAACTCAAGTAAGCTTTGGCGGATTTGACAGTGATGTTAAAGCTAGAGATCTTATGAGTTATCTGGAATCCGAGATTGGGCTTGTGGACAGATGTAGATTGAAAACTTCTTGGACTCCTCCAGAATCATACCCAGATTTTGAAGTCAGCAATGTTGCTAATGTTATAAAATCTGATGATTACAAGAAGGTGGTGCCTCATGCATTTGTGCATTTTGTCTCACCTGACTCTGCTGCTGAGGCTCTACATGCTGCAGGTCGTGGCGAGCTTCTTTTTAACGGTAAATTGTTGAAGGCGAGTTTGGGGCCTGAGAGTCCTTTTCATATAAATCAGAGGCGAAGGACTAAGGTTCCCTTTAAGTTATCTGATGTGCAAGTTGATATAGGGAACTTAACTTGTCATGATGGGTTTTCAGTTGCTTGGAGAGGGCCTTCGAGTGGAATGGATTTTCTAGTGGATCCCTTTGATGGAACCTGTAAATTTTGTTTCACGAAGGATACTGCATTCTCTTTTAAAGATAACAACAAGTATACAGTTTTGAAGTGTGATTACAAATTGGAGTTCATAGTGAGGGACATTAATCAGATCAAAAGATATACGGATACATCATGTTATGTTATTCTCTTGCAGCTTACATCATCACCCTGCATTTGGTATAGAACAGCAGATGATGATATTGCTAAATCAGTTCCATATGATTTGTTGGATGATGATGATCCATGGATCCGGACAACAGATTTCACGATTAGTGGAGCTATTGGTCGTTGTAATACTTTCAGAGTTTCAGTCCCACCCCGCTATGGCATCAAGCTGAATAATGCCATGAATTATCTAAAAGAACAAAGAGTTCACCAGGTCTCCCTCAACCGGCCTCCCAAGATCCTGAATGAACCAGATTATGGTGTGCAAATGACCGATCACTTCTTTTGCATCTTTTATAAAGAAGACATATCCTTTGAGATATTATTTCTGGTAAATGCCGTAATGCACAAAGGGATAATCAACCAACACCAAATGTCTGATAGATTTTTTGATTTGCTAAGAAACCAGCCCAATGAAGTTAATTTGGCTGCTTTAAGTCATATTCATTCTTATAGACGTCCTGTGTTGGATGCCTGTAAGAAGCTAAAACTTGTACAAGAATGGTTGTTGAAGAACCCTACGCTTTGGAAAAGATCTAAAGAGCTGGTAGATATCGTTGAAATCAGGAGATTAGTAATAACTCCTTCAAAAGCATATTGCTTTCCACCTGAAGTTGAACTGTCCAATAGGGTTTTGAGAAGATACAAGGATGTTGCCGATAGGTTCCTCAGGGTTACCTTCATGGATGAAGGCATGAAGAAAATCAATTCACATGTTTATACCTATTATGTTGCCCCCATAGTAAAGGAAATTACTTCAAGCTCCTTTCCCCAGAAGACCAAAATATTTGCAAGGATGAAACATATTCTGAAACATGGATTTCACTTGTGTGGTAGGAAATACTCCTTTTTGGCGTATTCATCCAACCAACTGAGGGACCAATCAGCTTGGTTCTTTGCTGAATGCAAAAATATAAGTGTTGATGGTATTTTGGGTTGGATGGGGAAATTTACCAATAAAAATGTTGCCAAGTGTGCTGCTAGAATTGGTCAGTGCTTTTCATCTACTTATGCAACAATTGAAGTTCCAAGAAACATGGTCAATCACAATCTTCAGGATGTTGAGAGGAATGGATATGTTTTCTCTGATGGGATTGGAACCATTACTCCTGATCTTGCGCAGGAAGTTGCAGACAAACTAAAAATGGATGGGAGCCTGCCCTGCGCTTACCAAATTAGATATGCAGGTTACAAAGGTGTTGTTGCCACTTGGCCATCCAAGGAGGACGGGATCAGACTTGCTTTAAGGCCAAGCATGAATAAATTTGAATCAGATCATAGAATCTTGGAGATCTGTTCATGGACTAGATTTCAGCCAGGTTTTCTTAATAGGCAGATTATAACCCTCCTTTCTACACTAAGTGTTCCTGATGAAATTTTCTGGAGTATGCAGGAGACTATGATTTCAAAACTGGATAGAATGATCACCGATACAGATGTGGCTTTTGAAGTTCTCACTGCATCCTGTGCCGAGCAAGGAAATGCAGCGGCAATTATGTTGAGTGCTGGTTTTGAACCTCGAACCGAACCTCATCTAAGGGGCATGCTAATGTGTATAAGAGCAGCACAGCTGTGGGGCCTTCGGGAAAAAGCTAGGATTTTTGTTACTGAGGGGAGGTGGTGTATGGGGTGTTTCGACGAGAGCGGCGTGTTACAAGAAGGCCAATGCTTCATCCAAGTATCCACTCCATTGCTTGAGAAGTGTTTCTCCAAGCATGGGTCTCTCTTTGCTGAGACAAAGAACAATCTTACTGTGGTAAGAGGGACTGTAGTCATAGCGAAAAATCCGTGCCTTCATCCAGGAGATGTGAGAATTCTCGAAGCAGTTGATGCTCCCGAGTTGCATCATTTGTACGATTGCCTCGTGTTTCCTCAAAATGGTGAACGACCCCATACCAATGAAGCTTCTGGAAGTGATTTGGATGGCGATCTCTACTTCACTACTTGGGATGAAAATCTTATTCCACCTAGTAAAAAAAGTTGGCCACCTATGGAGTATGCTCCAGCGGATGTAAAGACTCTTCAACGTAAAATTACTCGATTGGATATAATGGAGTTCTTTGCGAAAAATATGATCAATGAGAGTCTGGGGACAATATGCAATGCGCATGTTGTTCATGCTGACCGCAGCAAGTATGGAGCTTTGGATGAGAACTGTATTCAATTATCTGAATTAGCTGCCACAGCTGTTGATTTCCCCAAGACAGGGAAGATCGTGACCATGCCTCCCCATTTAAAACCAAAACTATATCCAGATTTTATGGGAAAGGAAGCTACTCAATCATACAAGTCCACCAAAATTCTAGGAAAAATGTACCGCCGAATTAGAGATGCGTATGATGATGATGATATGATCACATCACGTGAGCTAAATTTTACTCCTGGCGATGTCCATTATGATGTAGACCTCGAAGTGGCAGGAGCAGAAGATTTCATTGCAGAAGCATGGAATCAAAAATGCTCATACGATGGTCAGCTGAGCGGTTTACTGGGACAATATAAAGTTAATAGGGAAGAAGAAATTGTCACTGGACATATTTGGTCCATGCCAAAGTACGTTAGTAGGAAGCAAGGAGAGCTGAAGGAGAAGCTTAAGCATTCTTATAGCACTCTTAAGAAAGATTTCAGGCAAGTTTTTGAGAATATTGGGCCAGAGTTTGAGCAACTCACTTGTGATGAAAGGAATGCATTTTATGAAAAAAAGGCATCTGCCTGGTATCAGGTGGCATACCATCCGACTTGGTTGAAGAAATCATTGGAGCTGCGAGAACCCGACGCGCCTGAGGCCATCCCGATGTTAAGCTTTCCTTGGATTGCTGCCGATTATCTTGCACGAATCAAAATCAAATGCAGGCGGATGAAAAGTTTTGACCCAACAAAGCCGATTAACTCTTTGGTGAGTTATCTCTCTGAACGAATATGA

Protein sequence

MGSEESEKIVVTQVSFGGFDSDVKARDLMSYLESEIGLVDRCRLKTSWTPPESYPDFEVSNVANVIKSDDYKKVVPHAFVHFVSPDSAAEALHAAGRGELLFNGKLLKASLGPESPFHINQRRRTKVPFKLSDVQVDIGNLTCHDGFSVAWRGPSSGMDFLVDPFDGTCKFCFTKDTAFSFKDNNKYTVLKCDYKLEFIVRDINQIKRYTDTSCYVILLQLTSSPCIWYRTADDDIAKSVPYDLLDDDDPWIRTTDFTISGAIGRCNTFRVSVPPRYGIKLNNAMNYLKEQRVHQVSLNRPPKILNEPDYGVQMTDHFFCIFYKEDISFEILFLVNAVMHKGIINQHQMSDRFFDLLRNQPNEVNLAALSHIHSYRRPVLDACKKLKLVQEWLLKNPTLWKRSKELVDIVEIRRLVITPSKAYCFPPEVELSNRVLRRYKDVADRFLRVTFMDEGMKKINSHVYTYYVAPIVKEITSSSFPQKTKIFARMKHILKHGFHLCGRKYSFLAYSSNQLRDQSAWFFAECKNISVDGILGWMGKFTNKNVAKCAARIGQCFSSTYATIEVPRNMVNHNLQDVERNGYVFSDGIGTITPDLAQEVADKLKMDGSLPCAYQIRYAGYKGVVATWPSKEDGIRLALRPSMNKFESDHRILEICSWTRFQPGFLNRQIITLLSTLSVPDEIFWSMQETMISKLDRMITDTDVAFEVLTASCAEQGNAAAIMLSAGFEPRTEPHLRGMLMCIRAAQLWGLREKARIFVTEGRWCMGCFDESGVLQEGQCFIQVSTPLLEKCFSKHGSLFAETKNNLTVVRGTVVIAKNPCLHPGDVRILEAVDAPELHHLYDCLVFPQNGERPHTNEASGSDLDGDLYFTTWDENLIPPSKKSWPPMEYAPADVKTLQRKITRLDIMEFFAKNMINESLGTICNAHVVHADRSKYGALDENCIQLSELAATAVDFPKTGKIVTMPPHLKPKLYPDFMGKEATQSYKSTKILGKMYRRIRDAYDDDDMITSRELNFTPGDVHYDVDLEVAGAEDFIAEAWNQKCSYDGQLSGLLGQYKVNREEEIVTGHIWSMPKYVSRKQGELKEKLKHSYSTLKKDFRQVFENIGPEFEQLTCDERNAFYEKKASAWYQVAYHPTWLKKSLELREPDAPEAIPMLSFPWIAADYLARIKIKCRRMKSFDPTKPINSLVSYLSERI

Homology

[Close]

BLAST of IVF0016227 vs. ExPASy Swiss-Prot
Match: Q9SG02 (RNA-dependent RNA polymerase 6 OS=Arabidopsis thaliana OX=3702 GN=RDR6 PE=1 SV=1)

HSP 1 Score: 1671.8 bits (4328), Expect = 0.0e+00
Identity = 795/1199 (66.31%), Postives = 960/1199 (80.07%), Query Frame = 0


Query: 1    MGSE-ESEKIVVTQVSFGGFDSDVKARDLMSYLESEIGLVDRCRLKTSWTPPESYPDFEV 60
            MGSE   +K VVTQVS GGF     A+ L  YLE E+G+V RCRLKTSWTPP SYP+FE+
Sbjct: 1    MGSEGNMKKSVVTQVSIGGFGESTTAKQLTDYLEDEVGIVWRCRLKTSWTPPGSYPNFEI 60

Query: 61   SNVANVIKSDDYKKVVPHAFVHFVSPDSAAEALHAAGRGELLFNGKLLKASLGPESPFHI 120
            ++ +N+   D+YKKV PHAFVHF   +SA  A+ AAG+  L+ +G+ LK SLGP++P+ +
Sbjct: 61   ADTSNIPSIDEYKKVEPHAFVHFAVFESAGRAMDAAGQCNLILDGQPLKVSLGPKNPYSL 120

Query: 121  NQRRRTKVPFKLSDVQVDIGNLTCHDGFSVAWRGPSSGMDFLVDPFDGTCKFCFTKDTAF 180
            NQRRRT VP+KL+ + ++IG L   D F V+WR  + G+DFLVDPFD TCKFCF K TAF
Sbjct: 121  NQRRRTTVPYKLAGITLEIGTLVSRDDFFVSWR--AEGVDFLVDPFDNTCKFCFRKSTAF 180

Query: 181  SFKDNNKYTVLKCDYKLEFIVRDINQIKRYTDTSCYVILLQLTSSPCIWYRTADDDIAKS 240
            SFKD   + V+ CDYKLE +VRDI  +++Y     +V++LQL SSP +WYRTADDDI  +
Sbjct: 181  SFKDAVMHAVINCDYKLELLVRDIQTVRQYKTLHGFVLILQLASSPRVWYRTADDDIYDT 240

Query: 241  VPYDLLDDDDPWIRTTDFTISGAIGRCNTFRVSVPPRYGIKLNNAMNYLKEQRVHQVSLN 300
            VP DLLDDDDPWIRTTDFT  GAIGRC+++RV + PRY  KL  A++Y + +RV +  + 
Sbjct: 241  VPGDLLDDDDPWIRTTDFTQVGAIGRCHSYRVLISPRYENKLRTALDYFRMRRVQEERVR 300

Query: 301  RPPKILNEPDYGVQMTDHFFCIFYKEDISFEILFLVNAVMHKGIINQHQMSDRFFDLLRN 360
             PP+I NEP +G  ++DHFFCI +KE ISFEI+FLVN+V+H+G+ NQ Q+++RFFDLLRN
Sbjct: 301  WPPRIRNEPCFGEPVSDHFFCIHHKEGISFEIMFLVNSVLHRGVFNQFQLTERFFDLLRN 360

Query: 361  QPNEVNLAALSHIHSYRRPVLDACKKLKLVQEWLLKNPTLWKRSKELVDIVEIRRLVITP 420
            QP +VN+A+L H+ +Y+RPV DA K+LKLVQEW+ KNP L    ++  DI EIRRLVITP
Sbjct: 361  QPKDVNIASLKHLCTYKRPVFDAYKRLKLVQEWIQKNPKLLGSHEQSEDISEIRRLVITP 420

Query: 421  SKAYCFPPEVELSNRVLRRYKDVADRFLRVTFMDEGMKKINSHVYTYYVAPIVKEITSSS 480
            ++AYC PPEVELSNRVLRRYK VA+RFLRVTFMDE M+ INS+V +Y+VAPIVK++TSSS
Sbjct: 421  TRAYCLPPEVELSNRVLRRYKAVAERFLRVTFMDESMQTINSNVLSYFVAPIVKDLTSSS 480

Query: 481  FPQKTKIFARMKHILKHGFHLCGRKYSFLAYSSNQLRDQSAWFFAECKNISVDGILGWMG 540
            F QKT +F R+K IL  GF LCGRKYSFLA+S+NQLRD+SAWFFAE     V  I  WMG
Sbjct: 481  FSQKTYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDRSAWFFAEDGKTRVSDIKTWMG 540

Query: 541  KFTNKNVAKCAARIGQCFSSTYATIEVPRNMVNHNLQDVERNGYVFSDGIGTITPDLAQE 600
            KF +KNVAKCAAR+G CFSSTYAT++V  + V+  + D+ERNGYVFSDGIGTITPDLA E
Sbjct: 541  KFKDKNVAKCAARMGLCFSSTYATVDVMPHEVDTEVPDIERNGYVFSDGIGTITPDLADE 600

Query: 601  VADKLKMDGSL-PCAYQIRYAGYKGVVATWPSKEDGIRLALRPSMNKFESDHRILEICSW 660
            V +KLK+D    PCAYQIRYAG+KGVVA WPSK DGIRLALR SM KF S H ILEICSW
Sbjct: 601  VMEKLKLDVHYSPCAYQIRYAGFKGVVARWPSKSDGIRLALRDSMKKFFSKHTILEICSW 660

Query: 661  TRFQPGFLNRQIITLLSTLSVPDEIFWSMQETMISKLDRMITDTDVAFEVLTASCAEQGN 720
            TRFQPGFLNRQIITLLS L VPDEIFW MQE+M+ KL+R++ DTDVAFEVLTASCAEQGN
Sbjct: 661  TRFQPGFLNRQIITLLSVLGVPDEIFWDMQESMLYKLNRILDDTDVAFEVLTASCAEQGN 720

Query: 721  AAAIMLSAGFEPRTEPHLRGMLMCIRAAQLWGLREKARIFVTEGRWCMGCFDESGVLQEG 780
             AAIMLSAGF+P+TEPHLRGML  +R AQLWGLREK+RIFVT GRW MGC DE+G+L+ G
Sbjct: 721  TAAIMLSAGFKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVTSGRWLMGCLDEAGILEHG 780

Query: 781  QCFIQVSTPLLEKCFSKHGSLFAETKNNLTVVRGTVVIAKNPCLHPGDVRILEAVDAPEL 840
            QCFIQVS P +E CFSKHGS F ETK +L VV+G V IAKNPCLHPGDVRILEAVD P+L
Sbjct: 781  QCFIQVSKPSIENCFSKHGSRFKETKTDLEVVKGYVAIAKNPCLHPGDVRILEAVDVPQL 840

Query: 841  HHLYDCLVFPQNGERPHTNEASGSDLDGDLYFTTWDENLIPPSKKSWPPMEYAPADVKTL 900
            HH+YDCL+FPQ G+RPHTNEASGSDLDGDLYF  WD+ LIPP++KS+P M Y  A+ K+L
Sbjct: 841  HHMYDCLIFPQKGDRPHTNEASGSDLDGDLYFVAWDQKLIPPNRKSYPAMHYDAAEEKSL 900

Query: 901  QRKITRLDIMEFFAKNMINESLGTICNAHVVHADRSKYGALDENCIQLSELAATAVDFPK 960
             R +   DI++FFA+N+ NE LGTICNAHVVHADRS+YGA+DE C+ L+ELAATAVDFPK
Sbjct: 901  GRAVNHQDIIDFFARNLANEQLGTICNAHVVHADRSEYGAMDEECLLLAELAATAVDFPK 960

Query: 961  TGKIVTMPPHLKPKLYPDFMGKEATQSYKSTKILGKMYRRIRDAYDDDDMITSRELNFTP 1020
            TGKIV+MP HLKPKLYPDFMGKE  Q+YKS KILG++YRR+++ YD+D   +S E +  P
Sbjct: 961  TGKIVSMPFHLKPKLYPDFMGKEDYQTYKSNKILGRLYRRVKEVYDEDAEASSEE-STDP 1020

Query: 1021 GDVHYDVDLEVAGAEDFIAEAWNQKCSYDGQLSGLLGQYKVNREEEIVTGHIWSMPKYVS 1080
              + YD  LE+ G ED I EAW  KC YDGQL GLLGQYKV +EEEIVTGHIWSMPKY S
Sbjct: 1021 SAIPYDAVLEIPGFEDLIPEAWGHKCLYDGQLIGLLGQYKVQKEEEIVTGHIWSMPKYTS 1080

Query: 1081 RKQGELKEKLKHSYSTLKKDFRQVFENIGPEFEQLTCDERNAFYEKKASAWYQVAYHPTW 1140
            +KQGELKE+LKHSY++LKK+FR+VFE   P+ E L+ +E+N  YEKKASAWY V YHP W
Sbjct: 1081 KKQGELKERLKHSYNSLKKEFRKVFEETIPDHENLSEEEKNILYEKKASAWYHVTYHPEW 1140

Query: 1141 LKKSLELREPDAPEAIPMLSFPWIAADYLARIKIKCRRMKSFDPTKPINSLVSYLSERI 1198
            +KKSLEL++PD      MLSF WIAADYLARIKI+ R M S D  KP++SL  +L++R+
Sbjct: 1141 VKKSLELQDPDESSHAAMLSFAWIAADYLARIKIRSREMGSIDSAKPVDSLAKFLAQRL 1196

[Close]

BLAST of IVF0016227 vs. ExPASy Swiss-Prot
Match: Q8LHH9 (Probable RNA-dependent RNA polymerase SHL2 OS=Oryza sativa subsp. japonica OX=39947 GN=SHL2 PE=2 SV=1)

HSP 1 Score: 1416.0 bits (3664), Expect = 0.0e+00
Identity = 688/1200 (57.33%), Postives = 875/1200 (72.92%), Query Frame = 0


Query: 9    IVVTQVSFGGFDSDVKARDLMSYLESEIGLVDRCRLKTSWTPPESYPDFEV----SNVAN 68
            +V TQVS GGFD+ V A DL  +LE E+GLV RCR+KTSWTPP+SYPDF +    ++ + 
Sbjct: 27   LVTTQVSLGGFDAGVAAGDLADFLEHEVGLVWRCRVKTSWTPPDSYPDFALPTAPASASA 86

Query: 69   VIKSDDYKKVVPHAFVHFVSPDSAAEALHAAGRGELLFNGKLLKASLGPESPFHINQRRR 128
                  Y +V PHAFVHF  P+ A  A   AG   L+  GK L+ +  P+S   ++ RR 
Sbjct: 87   AAAPPRYDRVPPHAFVHFARPEGARRAADLAGETRLILRGKPLRVASAPDSSLRVS-RRS 146

Query: 129  TKVPFKLSDVQVDIGNLTCHDGFSVAWRGPSSGMDFLVDPFDGTCKFCFTKDTAFSFKDN 188
            +  PF+  DV++++G L     F  AWRGP +G+D  VDPFDG C+  FT+DTAF+F   
Sbjct: 147  SIAPFRFPDVRLEVGALPSPGAFLAAWRGPDAGLDLSVDPFDGCCRLVFTRDTAFTFPGF 206

Query: 189  NKYTVLKCDYKLEFIVRDINQIKRY-TDTSCYVILLQLTSSPCIWYRTADDDIAKSVPYD 248
             +   ++CD KLEF VRD+ +++ Y  D S   +LL+L ++P + YRTADDD  + VP+D
Sbjct: 207  REVAAIRCDVKLEFPVRDVLEVRLYRLDCS---LLLRLAAAPLVHYRTADDDFHEPVPFD 266

Query: 249  LLDDDDPWIRTTDFTISGAIGRCNTFRVSVPPRYGIKLNNAMNYLKEQRVHQVSL----- 308
            LLDDDDPWIRTTD T SGAIGRC  +R+S   R+  K++ A++Y++E+RV  V       
Sbjct: 267  LLDDDDPWIRTTDITPSGAIGRCGVYRISFSARFWPKMDRALDYMRERRVAIVDCGGGWG 326

Query: 309  -NRPPKILNEPDYGVQMTDHFFCIFYKEDISFEILFLVNAVMHKGIINQHQMSDRFFDLL 368
              R   + +E ++G  M D FFC+ + E + F +LF+VNA++HKGIINQHQ++  FF LL
Sbjct: 327  PRRGLTVRDELEFGEPMQDVFFCLQHAEGLKFPLLFMVNALVHKGIINQHQLTPEFFSLL 386

Query: 369  RNQPNEVNLAALSHIHSYRRPVLDACKKLKLVQEWLLKNPTLWKRSKELVDIVEIRRLVI 428
                  VN+AAL      + PV DAC +LK     + +NP L   SK   D  E+RRLVI
Sbjct: 387  GRSEENVNVAALRDFWGDKFPVFDACGRLKKALNRVARNPKL-LCSKVGDDHAEVRRLVI 446

Query: 429  TPSKAYCFPPEVELSNRVLRRYKDVADRFLRVTFMDEGMKKINSHVYTYYVAPIVKEITS 488
            TP++AYC PPEVE SNRVLR Y +VADRFLRVTFMDEGM+ +N++V   + APIVK++ S
Sbjct: 447  TPTRAYCLPPEVERSNRVLRHYHEVADRFLRVTFMDEGMQVLNNNVLNSFTAPIVKDLMS 506

Query: 489  SSFPQKTKIFARMKHILKHGFHLCGRKYSFLAYSSNQLRDQSAWFFAECKNISVDGILGW 548
            + F QKT ++ R++ +L  GFH+CGRKYSFLA+SSNQLRD+SAWFFAE +  +V+ I  W
Sbjct: 507  NFFQQKTTVYKRVRMLLTEGFHMCGRKYSFLAFSSNQLRDKSAWFFAEDRKTTVEAIRKW 566

Query: 549  MGKFTNKNVAKCAARIGQCFSSTYATIEVPRNMVNHNLQDVERNGYVFSDGIGTITPDLA 608
            MG+FT+KNVAK AAR+GQCFSSTYAT+ +  + V+ +  DV  N Y+FSDGIG ITPDLA
Sbjct: 567  MGRFTSKNVAKHAARMGQCFSSTYATVTMRPDEVDESFDDVVHNEYIFSDGIGKITPDLA 626

Query: 609  QEVADKLKMDGSLPCAYQIRYAGYKGVVATWPSKEDGIRLALRPSMNKFESDHRILEICS 668
             EVA++L++  + P AYQIR+AG+KGV+A W    DG RL LRPSM KFES+H +LE+ S
Sbjct: 627  LEVAERLQLTDNPPSAYQIRFAGFKGVIAVWQGHGDGTRLFLRPSMRKFESNHLVLEVVS 686

Query: 669  WTRFQPGFLNRQIITLLSTLSVPDEIFWSMQETMISKLDRMITDTDVAFEVLTASCAEQG 728
            WT+FQPGFLNRQII LLS+L+VPD IFW MQETM+S L+ +++D DVAFEVLT SCA+ G
Sbjct: 687  WTKFQPGFLNRQIIILLSSLNVPDSIFWQMQETMLSNLNNILSDRDVAFEVLTTSCADDG 746

Query: 729  NAAAIMLSAGFEPRTEPHLRGMLMCIRAAQLWGLREKARIFVTEGRWCMGCFDESGVLQE 788
            N AA+MLSAGFEPRTEPHL+ ML+ IR+AQL  L EKARIFV +GRW MGC DE GVL++
Sbjct: 747  NTAALMLSAGFEPRTEPHLKAMLLAIRSAQLQDLLEKARIFVPKGRWLMGCLDELGVLEQ 806

Query: 789  GQCFIQVSTPLLEKCFSKHGSLFAETKNNLTVVRGTVVIAKNPCLHPGDVRILEAVDAPE 848
            GQCFI+ + P L   F KHGS F+ T  N  V+ GTVVIAKNPCLHPGDVRILEAVD PE
Sbjct: 807  GQCFIRATVPSLNSYFVKHGSRFSSTDKNTEVILGTVVIAKNPCLHPGDVRILEAVDVPE 866

Query: 849  LHHLYDCLVFPQNGERPHTNEASGSDLDGDLYFTTWDENLIPPSKKSWPPMEYAPADVKT 908
            LHHL DCLVFPQ GERPH NEASGSDLDGDLYF TWDE LIPP KKSW PM+Y+P + K 
Sbjct: 867  LHHLVDCLVFPQKGERPHANEASGSDLDGDLYFVTWDEKLIPPGKKSWNPMDYSPPEAKQ 926

Query: 909  LQRKITRLDIMEFFAKNMINESLGTICNAHVVHADRSKYGALDENCIQLSELAATAVDFP 968
            L R++++ DI++FF KNMI+E+LG ICNAHVVHAD S+YGA+DE CI L+ELAATAVDFP
Sbjct: 927  LPRQVSQHDIIDFFLKNMISENLGRICNAHVVHADLSEYGAMDEKCIHLAELAATAVDFP 986

Query: 969  KTGKIVTMPPHLKPKLYPDFMGKEATQSYKSTKILGKMYRRIRDAYDDDDMITSRELNFT 1028
            KTGK+  MPPHLKPK+YPDFMGKE  QSYKS KILG++YR I++A + D  + S+E+  T
Sbjct: 987  KTGKLAIMPPHLKPKVYPDFMGKEDGQSYKSEKILGRLYRSIQEASNGD--VVSQEV-CT 1046

Query: 1029 PGDVHYDVDLEVAGAEDFIAEAWNQKCSYDGQLSGLLGQYKVNREEEIVTGHIWSMPKYV 1088
            P D+ YD+DLEV GA DF+A AW  KCSYD QLS LL QY+V  E E+VTGHI  + K  
Sbjct: 1047 PNDLPYDIDLEVPGASDFLASAWQCKCSYDAQLSALLSQYRVRTEAELVTGHITFLVKNS 1106

Query: 1089 SRKQGELKEKLKHSYSTLKKDFRQVFENIGPEFEQLTCDERNAFYEKKASAWYQVAYHPT 1148
            S+KQG++K++LK +YS L+K+F+  FE+I  +  ++  DE+N  YE KASAWYQV YHP 
Sbjct: 1107 SKKQGDIKDRLKTAYSALRKEFKSTFESIASDQCEIGDDEKNLLYEMKASAWYQVTYHPK 1166

Query: 1149 WLKKSLELREPDAPEAIPMLSFPWIAADYLARIKIKCRRMKSFDPTKPINSLVSYLSERI 1198
            W++KS  +  PD  E    LSF WI  DYLARIK++C      +  KP+  L +Y+SERI
Sbjct: 1167 WVEKSRGILGPDGEEIPASLSFAWIPVDYLARIKLRCHGKVRVEGQKPVERLAAYISERI 1218

[Close]

BLAST of IVF0016227 vs. ExPASy Swiss-Prot
Match: Q9LQV2 (RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=RDR1 PE=2 SV=1)

HSP 1 Score: 578.2 bits (1489), Expect = 2.2e-163
Identity = 359/1011 (35.51%), Postives = 540/1011 (53.41%), Query Frame = 0


Query: 193  DYKLEFIVRDINQIKRYT--DTSCYVILLQLTSSPCIWYRTADDDIAKSVPYDLLD---- 252
            DY+LE    +I QI  ++    S   +++Q+  +P I+ +   +D   ++ + ++D    
Sbjct: 143  DYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAPKIFEK---EDQPINLLFGIMDFYSD 202

Query: 253  -DDDPWIRTTDFTISGAIGRCNTFRVSVPPRYGIK--LNNAMNYLKEQRVHQVSLNRPPK 312
              D+ WIRTTDFT S  IG+   F + +P    +     N  NY  E R     +     
Sbjct: 203  GSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRENFANY-AEHRASSFLIESGSS 262

Query: 313  ILNEPDYGVQMTDHFFCIFYKEDISFEILFLVNAVMHKGIINQHQMSDRFFDLLRNQPNE 372
              +  +  V + D          + FEILF +N ++    ++   +   F+ LL  +   
Sbjct: 263  YSSNANTLVPVVDPPPGF----SLPFEILFKLNTLVQNACLSGPALDLDFYRLLNQK--- 322

Query: 373  VNLAALSHIHSYRRPVLDAC-KKLKLVQE-------WLLKNPTLWKRSKELV-------- 432
                       Y R ++D C +KL  + E       WL      W    +L         
Sbjct: 323  ----------KYDRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLSPTISLD 382

Query: 433  -DIVEIRRLVITPSKAYCFPPEVELSNRVLRRYKDVADRFLRVTFMDEGMKKINSHVYTY 492
              +V + R+ +TP++ Y   PEV +SNRVLR Y    + FLRV+F+DE ++K+ S     
Sbjct: 383  DGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKVRS----- 442

Query: 493  YVAPIVKEITSSSFPQKTKIFARMKHILKHGFHLCGRKYSFLAYSSNQLRDQSAWFFAEC 552
                 +     SS  ++TK++ R+  +L+ G  +  +K+ FLA+SS+QLR+ SAW FA  
Sbjct: 443  -----MDLSPRSSTQRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPI 502

Query: 553  KNISVDGILGWMGKFTN-KNVAKCAARIGQCFSSTYATIEVPRNMVNHNLQDVE----RN 612
              I+   I  WMG F + +NVAK AAR+GQ FSS+  T+ V  + +   + DVE      
Sbjct: 503  DRITAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEI-EVIPDVEIISLGT 562

Query: 613  GYVFSDGIGTITPDLAQEVADKLKMDGSLPCAYQIRYAGYKGVVATWPSKEDGIRLALRP 672
             YVFSDGIG I+ + A++VA K  +    P A+QIRY GYKGVVA  P+     +L+LR 
Sbjct: 563  RYVFSDGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSK--KLSLRK 622

Query: 673  SMNKFESDHRILEICSWTRFQPGFLNRQIITLLSTLSVPDEIFWSMQETMISKLDRMITD 732
            SM+KFES++  L++ +W+++QP ++NRQ+ITLLSTL V D +F   Q  ++ +LD ++T 
Sbjct: 623  SMSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTH 682

Query: 733  TDVAFEVL-TASCAEQGNAAAIMLSAGFEPRTEPHLRGMLMCIRAAQLWGLREKARIFVT 792
               A E L   +  E  N    ++  G++P  EP L  ML   RA++L  LR K RIF++
Sbjct: 683  PLEAHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFIS 742

Query: 793  EGRWCMGCFDESGVLQEGQCFIQVSTPLLEKCFSKHGSLFAETKNNLTVVRGTVVIAKNP 852
             GR  MGC DE+  L+ GQ  +Q S P+      + G  F        ++ G VV+AKNP
Sbjct: 743  GGRSMMGCLDETRTLEYGQVVVQYSDPM------RPGRRF--------IITGPVVVAKNP 802

Query: 853  CLHPGDVRILEAVDAPELHHLYDCLVFPQNGERPHTNEASGSDLDGDLYFTTWDENLIPP 912
            CLHPGDVR+L+AV+ P L+H+ DC+VFPQ G RPH NE SGSDLDGD+YF  WD+ L+PP
Sbjct: 803  CLHPGDVRVLQAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELVPP 862

Query: 913  SKKSWPPMEYAPADVKTLQRKITRLDIMEFFAKNMINESLGTICNAHVVHADRSKYGALD 972
              ++  PM+Y P   + L   +T  ++ E+FA  ++N+SLG I NAH   AD+    A  
Sbjct: 863  --RTSEPMDYTPEPTQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFS 922

Query: 973  ENCIQLSELAATAVDFPKTGKIVTMPPHLKPKLYPDFMGKEATQSYKSTKILGKMYRRIR 1032
            + CI+L++  +TAVDFPKTG    +P HL  K YPDFM K    +Y+S  ++GK++R ++
Sbjct: 923  DPCIELAKKFSTAVDFPKTGVAAVIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVK 982

Query: 1033 DAYDDDDMITSRELNFTPGDVHYDVDLEVAGAEDFIAEAWNQKCSYDGQLSGLLGQYKVN 1092
            +      +I+ +          YD D+EV G E+++ EA+ QK +YD +L  L+  Y + 
Sbjct: 983  ER--APPLISIKSFTLDVASKSYDKDMEVDGFEEYVDEAFYQKANYDFKLGNLMDYYGIK 1042

Query: 1093 REEEIVTGHIWSMPKYVSRKQGELKEKLKHSYSTLKKDFRQVFENIGPEFEQLTCDERNA 1152
             E EI++G I  M K  ++++    E +  +   L+K+   +F             E   
Sbjct: 1043 TEAEILSGGIMRMSKSFTKRRD--AESIGRAVRALRKETLSLF----------NASEEEE 1084

Query: 1153 FYEKKASAWYQVAYHPTWLKKSLELREPDAPEAIPMLSFPWIAADYLARIK 1172
                KASAWY V YH ++     E    D       LSF W   D L RIK
Sbjct: 1103 NESAKASAWYHVTYHSSYWGLYNEGLNRD-----HFLSFAWCVYDKLVRIK 1084

[Close]

BLAST of IVF0016227 vs. ExPASy Swiss-Prot
Match: Q7XM31 (Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa subsp. japonica OX=39947 GN=RDR2 PE=2 SV=1)

HSP 1 Score: 568.2 bits (1463), Expect = 2.3e-160
Identity = 367/1021 (35.95%), Postives = 539/1021 (52.79%), Query Frame = 0


Query: 194  YKLEFIVRDINQIKRYTDTSCYVILLQLTSSPCIWYRTADDDIAKSVPYDLL-----DDD 253
            YKLE +  D+      T      ILLQL  +P I    +   +      D       D  
Sbjct: 155  YKLEVLFEDMKDCLGCTLDGMGAILLQLNYAPRIHTAISGPAVNSRFMDDRFHACKEDAK 214

Query: 254  DPWIRTTDFTISGAIGRCNTFRVSVPPRYGIKLNNAMNYLKEQRVHQVSLNRPPKILNEP 313
              W+R  DFT + + GRC+T          +KL  +       +    S N     +N  
Sbjct: 215  FSWVRALDFTPNYSFGRCSTL--------VLKLGKSALVSDILKSLPFSGNLGELTMNSM 274

Query: 314  DYGVQMTDHFFCIFY---KEDISFEILFLVNAVMHKGIINQHQMSDRFFDLLRNQPNEVN 373
            D GV  + +   + +      + +E+LF +N++MH G I    ++   F  L+  P +V+
Sbjct: 275  D-GVGASSNVVPLVHCPRDYSVPYEVLFRLNSLMHMGKIVAKHVNADLFKALQELPVDVS 334

Query: 374  LAALSHIHSYRRP-------VLDACKKLKLVQEWLLKNPTLWKRSKELVDIVEIRRLVIT 433
                  +H            +      +K     LL N    +  ++L   ++  R+ IT
Sbjct: 335  RRIFEKMHKLESTCYGPLQFIQQEAYSMKRSHNVLLSNEGEGEGERKL---MKCYRVNIT 394

Query: 434  PSKAYCFPPEVELSNRVLRRYKDVADRFLRVTFMDEGMKKINSHVYTYYVAPIVKEITSS 493
            PSK +CF PE E++N V++ +   A  F+RVTF+DE   K++S+  +  +     E    
Sbjct: 395  PSKIFCFGPEEEVTNYVVKHHSAYASDFVRVTFVDEDWSKLSSNAISARI-----EQGFF 454

Query: 494  SFPQKTKIFARMKHILKHGFHLCGRKYSFLAYSSNQLRDQSAWFFAECKNISVDGILGWM 553
            S P KT ++ R+  ILK GF +  + + FLA+S++QLR  S W FA   +++  GI  WM
Sbjct: 455  SKPFKTGLYYRILSILKKGFSIGPKNFEFLAFSASQLRGNSVWMFASNASLNAGGIRRWM 514

Query: 554  GKFTN-KNVAKCAARIGQCFSSTYATIEVPRNMVNHNLQDVE----RNGYVFSDGIGTIT 613
            G F N ++V+KCAAR+GQ FSS+  T EV R  V   + D+E     + Y+FSDGIG I+
Sbjct: 515  GHFENIRSVSKCAARMGQLFSSSRQTFEVLRWDV-EVIPDIEITTDGSKYIFSDGIGKIS 574

Query: 614  PDLAQEVADKLKMD-GSLPCAYQIRYAGYKGVVATWPSKEDGIRLALRPSMNKFESDHRI 673
               A+ VA  + +D  +LP A+QIRY GYKGV+A  P     I L+LRPSM KFES+ R+
Sbjct: 575  LRFAKRVAHHVGLDPTNLPSAFQIRYGGYKGVIAIDPM--SSIDLSLRPSMKKFESESRM 634

Query: 674  LEICSWTRFQPGFLNRQIITLLSTLSVPDEIFWSMQETMISKLDRMITDTDVAFEVLTAS 733
            L I SW++ QP ++NR+II+LLSTL + DEIF +MQ+  + + + M+T+ +VA  VL   
Sbjct: 635  LNITSWSKSQPCYVNREIISLLSTLGIRDEIFVAMQQDEMRETEEMLTNKEVALSVLGKL 694

Query: 734  CAEQGNAAAIMLSAGFEPRTEPHLRGMLMCIRAAQLWGLREKARIFVTEGRWCMGCFDES 793
               +   A  ML  G+EP +EP+L  +L   +  +L  +R + +I V +GR  +GC DE+
Sbjct: 695  GGSETKTAVKMLLQGYEPSSEPYLSMILKAHQENRLTDIRTRCKIHVPKGRVLIGCLDET 754

Query: 794  GVLQEGQCFIQVSTPLLEKCFSKHGSLFAETKNNLTVVRGTVVIAKNPCLHPGDVRILEA 853
            GVL+ GQ +I+++    E+  S     + +     TVV G V I KNPCLHPGD+R+LEA
Sbjct: 755  GVLEYGQVYIRITKNSKEQKDSNQSYFYNDDGKTATVV-GKVAITKNPCLHPGDIRVLEA 814

Query: 854  VDAPELHHLYDCLVFPQNGERPHTNEASGSDLDGDLYFTTWDENLIPPSKKSWPPMEYAP 913
            +  P+L  + DCLVFPQ GERPH NE SG DLDGDLYF TWD+ LIP  +K   PM+Y  
Sbjct: 815  IYDPDLVGMVDCLVFPQRGERPHPNECSGGDLDGDLYFITWDDKLIP--EKVDTPMDYTA 874

Query: 914  ADVKTLQRKITRLDIMEFFAKNMINESLGTICNAHVVHADRSKYGALDENCIQLSELAAT 973
               + +   +T  +I + F   MIN+SLG I  AH++HADRS   A    C+QL+ L + 
Sbjct: 875  TRPRIMDHVVTLEEIQKHFVDYMINDSLGAISTAHLIHADRSPLKARSPECLQLATLHSM 934

Query: 974  AVDFPKTGKIVTMPPHLKPKLYPDFMGKEATQSYKSTKILGKMYRRI---RDAYDDDDMI 1033
            AVDF KTG    MP  L+P+ YPDFM +     Y S  +LGK+YR      +   D   +
Sbjct: 935  AVDFAKTGAPAEMPRTLRPREYPDFMERWEKPMYISNGVLGKLYRSAMGHMEKSGDSGAL 994

Query: 1034 TSRELNFTPGDVHYDVDLEVAGAEDFIAEAWNQKCSYDGQLSGLLGQYKVNREEEIVTGH 1093
            +S     +P    YD DLEV G+++F+  A      Y+ +L+ L+  Y+   E+EI+TG+
Sbjct: 995  SSSSAQPSP---TYDPDLEVPGSDEFLQAAEEYYELYEEKLTTLMNYYRAELEDEILTGN 1054

Query: 1094 IWSMPKYVSR---KQGELKEKLKHSYSTLKKDFRQVFENIGPEFEQLTCDERNAFYEKKA 1153
            I +   Y+ R   +  E+K+++  +   L ++ R            L    +     + A
Sbjct: 1055 IRNKMLYLKRDNKRYFEMKDRIVAAVDALHREAR----------GWLLSSRKEEDASRMA 1114

Query: 1154 SAWYQVAYHPTWLKKSLELREPDAPEAIPMLSFPWIAADYLARIK----IKCRRMKSFDP 1184
            SAWY+V YH            PD        SFPWIA D L  IK    ++ RR K  D 
Sbjct: 1115 SAWYRVTYH------------PDRRRGKRFWSFPWIACDNLLAIKASSQLRRRRQKDDDS 1127

[Close]

BLAST of IVF0016227 vs. ExPASy Swiss-Prot
Match: Q0DXS3 (Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=RDR1 PE=2 SV=2)

HSP 1 Score: 546.6 bits (1407), Expect = 7.1e-154
Identity = 311/770 (40.39%), Postives = 448/770 (58.18%), Query Frame = 0


Query: 420  SKAYCFPPEVELSNRVLRRYKDVADRFLRVTFMDEGMKKINSHVYTYYVAPIVKEITSSS 479
            S  Y + PE+ +SNRV+R +    + FLR++F+DE  +K+ +         +     S  
Sbjct: 7    STVYFYGPEINVSNRVVRNFSSDIENFLRISFVDEDCEKLRA-------TDLSPRSASGH 66

Query: 480  FPQKTKIFARMKHILKHGFHLCGRKYSFLAYSSNQLRDQSAWFFAECKNISVDGILGWMG 539
               +T ++ R+  +L  G  + G+ + FLA+SS+QLRD SAW FA  + ++   I  WMG
Sbjct: 67   DANRTALYKRVLSVLSDGITIGGKNFEFLAFSSSQLRDNSAWMFASRQGLAASDIRTWMG 126

Query: 540  KFTN-KNVAKCAARIGQCFSSTYATIEVPRNMVNHNLQDVERNG--YVFSDGIGTITPDL 599
             F N +NVAK AAR+GQ FSS+  T++V +  V   + D+ +NG  +VFSDGIG I+   
Sbjct: 127  DFRNIRNVAKYAARLGQSFSSSTETLKVQKYEV-EEISDI-KNGTQHVFSDGIGKISSAF 186

Query: 600  AQEVADKLKMDGSLPCAYQIRYAGYKGVVATWPSKEDGIRLALRPSMNKFESDHRILEIC 659
            A EVA K  +    P A+QIRY GYKGVVA  P+     +L+LR SM KF+SD+  +++ 
Sbjct: 187  ANEVAMKCNLKRFAPSAFQIRYGGYKGVVAVDPTSR--WKLSLRKSMLKFQSDNITVDVL 246

Query: 660  SWTRFQPGFLNRQIITLLSTLSVPDEIFWSMQETMISKLDRMITDTDVAFEVL-TASCAE 719
            +++++QPGFLNRQ+ITLLSTL V D +F   QE  +++L++M+TD   A E +      E
Sbjct: 247  AYSKYQPGFLNRQLITLLSTLGVRDSVFEQKQEEAVNQLNKMVTDPQAAIEAIELMPMGE 306

Query: 720  QGNAAAIMLSAGFEPRTEPHLRGMLMCIRAAQLWGLREKARIFVTEGRWCMGCFDESGVL 779
              NA   +L  G++P  EP+L  +L   RA++L  L+ K+RI + +GR  MGC DE+  L
Sbjct: 307  ITNAVKELLLCGYQPDDEPYLSMLLQTFRASKLLELKTKSRILIPKGRAMMGCLDETRTL 366

Query: 780  QEGQCFIQVSTPLLEKCFSKHGSLFAETKNNLTVVRGTVVIAKNPCLHPGDVRILEAVDA 839
            + GQ FI+ ++ +                N+   V G VVIAKNPCLHPGD+RIL AVD 
Sbjct: 367  KYGQVFIRATSGV--------------NDNDRFTVTGKVVIAKNPCLHPGDIRILHAVDV 426

Query: 840  PELHHLYDCLVFPQNGERPHTNEASGSDLDGDLYFTTWDENLIPPSKKSWPPMEYAPADV 899
            P LHH+++C+VFPQ G RPH NE SGSDLDGD+YF +WD +LIPP  +   PM+Y PA  
Sbjct: 427  PVLHHMFNCVVFPQQGPRPHPNECSGSDLDGDIYFVSWDPSLIPP--RMVTPMDYTPAPT 486

Query: 900  KTLQRKITRLDIMEFFAKNMINESLGTICNAHVVHADRSKYGALDENCIQLSELAATAVD 959
            +TL   +T  ++ E+F   ++NESLG I NAHVV AD+    A    CI+L++L + AVD
Sbjct: 487  ETLDHDVTIEEVEEYFTNYIVNESLGMIANAHVVFADKEDLKAESSPCIELAKLFSIAVD 546

Query: 960  FPKTGKIVTMPPHLKPKLYPDFMGKEATQSYKSTKILGKMYRRIRDAYDDDDMITSRELN 1019
            FPKTG    +PP L  K YPDFM K    +Y+S  ++GK+YR I+         T RE+ 
Sbjct: 547  FPKTGVPALIPPELHVKEYPDFMEKLDKVTYESKGVIGKLYREIKKHTPHIKHFT-REV- 606

Query: 1020 FTPGDVHYDVDLEVAGAEDFIAEAWNQKCSYDGQLSGLLGQYKVNREEEIVTGHIWSMPK 1079
                   YD D+ V G ED+I EA   K  YD +L  L+  Y +  E EI++G I  M K
Sbjct: 607  ---ARRSYDTDMIVDGYEDYITEAMALKDEYDFKLGNLMDHYGIKSEAEIISGCILKMAK 666

Query: 1080 YVSRKQGELKEKLKHSYSTLKKDFRQVFENIGPEFEQLTCDERNAFY---EKKASAWYQV 1139
              ++K     + ++ +  +L+K+ R         F +++ D+    +   E KASAWY V
Sbjct: 667  NFTKKSD--ADAIRLAVRSLRKEARS-------RFSEMSLDDNGHGHDASEAKASAWYHV 726

Query: 1140 AYHPTWLKKSLELREPDAPEAIPMLSFPWIAADYLARIKIKCRRMKSFDP 1183
             YHP +     E       E    +SFPW   + L RIK + + ++   P
Sbjct: 727  TYHPEFWGCYNE-----GYERPHFISFPWCIYEKLLRIKQRRKFVRKMQP 730

[Close]

BLAST of IVF0016227 vs. ExPASy TrEMBL
Match: A0A1S4DVP7 (RNA-dependent RNA polymerase OS=Cucumis melo OX=3656 GN=LOC103488305 PE=3 SV=1)

HSP 1 Score: 2475.3 bits (6414), Expect = 0.0e+00
Identity = 1197/1197 (100.00%), Postives = 1197/1197 (100.00%), Query Frame = 0


Query: 1    MGSEESEKIVVTQVSFGGFDSDVKARDLMSYLESEIGLVDRCRLKTSWTPPESYPDFEVS 60
            MGSEESEKIVVTQVSFGGFDSDVKARDLMSYLESEIGLVDRCRLKTSWTPPESYPDFEVS
Sbjct: 1    MGSEESEKIVVTQVSFGGFDSDVKARDLMSYLESEIGLVDRCRLKTSWTPPESYPDFEVS 60

Query: 61   NVANVIKSDDYKKVVPHAFVHFVSPDSAAEALHAAGRGELLFNGKLLKASLGPESPFHIN 120
            NVANVIKSDDYKKVVPHAFVHFVSPDSAAEALHAAGRGELLFNGKLLKASLGPESPFHIN
Sbjct: 61   NVANVIKSDDYKKVVPHAFVHFVSPDSAAEALHAAGRGELLFNGKLLKASLGPESPFHIN 120

Query: 121  QRRRTKVPFKLSDVQVDIGNLTCHDGFSVAWRGPSSGMDFLVDPFDGTCKFCFTKDTAFS 180
            QRRRTKVPFKLSDVQVDIGNLTCHDGFSVAWRGPSSGMDFLVDPFDGTCKFCFTKDTAFS
Sbjct: 121  QRRRTKVPFKLSDVQVDIGNLTCHDGFSVAWRGPSSGMDFLVDPFDGTCKFCFTKDTAFS 180

Query: 181  FKDNNKYTVLKCDYKLEFIVRDINQIKRYTDTSCYVILLQLTSSPCIWYRTADDDIAKSV 240
            FKDNNKYTVLKCDYKLEFIVRDINQIKRYTDTSCYVILLQLTSSPCIWYRTADDDIAKSV
Sbjct: 181  FKDNNKYTVLKCDYKLEFIVRDINQIKRYTDTSCYVILLQLTSSPCIWYRTADDDIAKSV 240

Query: 241  PYDLLDDDDPWIRTTDFTISGAIGRCNTFRVSVPPRYGIKLNNAMNYLKEQRVHQVSLNR 300
            PYDLLDDDDPWIRTTDFTISGAIGRCNTFRVSVPPRYGIKLNNAMNYLKEQRVHQVSLNR
Sbjct: 241  PYDLLDDDDPWIRTTDFTISGAIGRCNTFRVSVPPRYGIKLNNAMNYLKEQRVHQVSLNR 300

Query: 301  PPKILNEPDYGVQMTDHFFCIFYKEDISFEILFLVNAVMHKGIINQHQMSDRFFDLLRNQ 360
            PPKILNEPDYGVQMTDHFFCIFYKEDISFEILFLVNAVMHKGIINQHQMSDRFFDLLRNQ
Sbjct: 301  PPKILNEPDYGVQMTDHFFCIFYKEDISFEILFLVNAVMHKGIINQHQMSDRFFDLLRNQ 360

Query: 361  PNEVNLAALSHIHSYRRPVLDACKKLKLVQEWLLKNPTLWKRSKELVDIVEIRRLVITPS 420
            PNEVNLAALSHIHSYRRPVLDACKKLKLVQEWLLKNPTLWKRSKELVDIVEIRRLVITPS
Sbjct: 361  PNEVNLAALSHIHSYRRPVLDACKKLKLVQEWLLKNPTLWKRSKELVDIVEIRRLVITPS 420

Query: 421  KAYCFPPEVELSNRVLRRYKDVADRFLRVTFMDEGMKKINSHVYTYYVAPIVKEITSSSF 480
            KAYCFPPEVELSNRVLRRYKDVADRFLRVTFMDEGMKKINSHVYTYYVAPIVKEITSSSF
Sbjct: 421  KAYCFPPEVELSNRVLRRYKDVADRFLRVTFMDEGMKKINSHVYTYYVAPIVKEITSSSF 480

Query: 481  PQKTKIFARMKHILKHGFHLCGRKYSFLAYSSNQLRDQSAWFFAECKNISVDGILGWMGK 540
            PQKTKIFARMKHILKHGFHLCGRKYSFLAYSSNQLRDQSAWFFAECKNISVDGILGWMGK
Sbjct: 481  PQKTKIFARMKHILKHGFHLCGRKYSFLAYSSNQLRDQSAWFFAECKNISVDGILGWMGK 540

Query: 541  FTNKNVAKCAARIGQCFSSTYATIEVPRNMVNHNLQDVERNGYVFSDGIGTITPDLAQEV 600
            FTNKNVAKCAARIGQCFSSTYATIEVPRNMVNHNLQDVERNGYVFSDGIGTITPDLAQEV
Sbjct: 541  FTNKNVAKCAARIGQCFSSTYATIEVPRNMVNHNLQDVERNGYVFSDGIGTITPDLAQEV 600

Query: 601  ADKLKMDGSLPCAYQIRYAGYKGVVATWPSKEDGIRLALRPSMNKFESDHRILEICSWTR 660
            ADKLKMDGSLPCAYQIRYAGYKGVVATWPSKEDGIRLALRPSMNKFESDHRILEICSWTR
Sbjct: 601  ADKLKMDGSLPCAYQIRYAGYKGVVATWPSKEDGIRLALRPSMNKFESDHRILEICSWTR 660

Query: 661  FQPGFLNRQIITLLSTLSVPDEIFWSMQETMISKLDRMITDTDVAFEVLTASCAEQGNAA 720
            FQPGFLNRQIITLLSTLSVPDEIFWSMQETMISKLDRMITDTDVAFEVLTASCAEQGNAA
Sbjct: 661  FQPGFLNRQIITLLSTLSVPDEIFWSMQETMISKLDRMITDTDVAFEVLTASCAEQGNAA 720

Query: 721  AIMLSAGFEPRTEPHLRGMLMCIRAAQLWGLREKARIFVTEGRWCMGCFDESGVLQEGQC 780
            AIMLSAGFEPRTEPHLRGMLMCIRAAQLWGLREKARIFVTEGRWCMGCFDESGVLQEGQC
Sbjct: 721  AIMLSAGFEPRTEPHLRGMLMCIRAAQLWGLREKARIFVTEGRWCMGCFDESGVLQEGQC 780

Query: 781  FIQVSTPLLEKCFSKHGSLFAETKNNLTVVRGTVVIAKNPCLHPGDVRILEAVDAPELHH 840
            FIQVSTPLLEKCFSKHGSLFAETKNNLTVVRGTVVIAKNPCLHPGDVRILEAVDAPELHH
Sbjct: 781  FIQVSTPLLEKCFSKHGSLFAETKNNLTVVRGTVVIAKNPCLHPGDVRILEAVDAPELHH 840

Query: 841  LYDCLVFPQNGERPHTNEASGSDLDGDLYFTTWDENLIPPSKKSWPPMEYAPADVKTLQR 900
            LYDCLVFPQNGERPHTNEASGSDLDGDLYFTTWDENLIPPSKKSWPPMEYAPADVKTLQR
Sbjct: 841  LYDCLVFPQNGERPHTNEASGSDLDGDLYFTTWDENLIPPSKKSWPPMEYAPADVKTLQR 900

Query: 901  KITRLDIMEFFAKNMINESLGTICNAHVVHADRSKYGALDENCIQLSELAATAVDFPKTG 960
            KITRLDIMEFFAKNMINESLGTICNAHVVHADRSKYGALDENCIQLSELAATAVDFPKTG
Sbjct: 901  KITRLDIMEFFAKNMINESLGTICNAHVVHADRSKYGALDENCIQLSELAATAVDFPKTG 960

Query: 961  KIVTMPPHLKPKLYPDFMGKEATQSYKSTKILGKMYRRIRDAYDDDDMITSRELNFTPGD 1020
            KIVTMPPHLKPKLYPDFMGKEATQSYKSTKILGKMYRRIRDAYDDDDMITSRELNFTPGD
Sbjct: 961  KIVTMPPHLKPKLYPDFMGKEATQSYKSTKILGKMYRRIRDAYDDDDMITSRELNFTPGD 1020

Query: 1021 VHYDVDLEVAGAEDFIAEAWNQKCSYDGQLSGLLGQYKVNREEEIVTGHIWSMPKYVSRK 1080
            VHYDVDLEVAGAEDFIAEAWNQKCSYDGQLSGLLGQYKVNREEEIVTGHIWSMPKYVSRK
Sbjct: 1021 VHYDVDLEVAGAEDFIAEAWNQKCSYDGQLSGLLGQYKVNREEEIVTGHIWSMPKYVSRK 1080

Query: 1081 QGELKEKLKHSYSTLKKDFRQVFENIGPEFEQLTCDERNAFYEKKASAWYQVAYHPTWLK 1140
            QGELKEKLKHSYSTLKKDFRQVFENIGPEFEQLTCDERNAFYEKKASAWYQVAYHPTWLK
Sbjct: 1081 QGELKEKLKHSYSTLKKDFRQVFENIGPEFEQLTCDERNAFYEKKASAWYQVAYHPTWLK 1140

Query: 1141 KSLELREPDAPEAIPMLSFPWIAADYLARIKIKCRRMKSFDPTKPINSLVSYLSERI 1198
            KSLELREPDAPEAIPMLSFPWIAADYLARIKIKCRRMKSFDPTKPINSLVSYLSERI
Sbjct: 1141 KSLELREPDAPEAIPMLSFPWIAADYLARIKIKCRRMKSFDPTKPINSLVSYLSERI 1197

[Close]

BLAST of IVF0016227 vs. ExPASy TrEMBL
Match: A0A5A7VD22 (RNA-dependent RNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G002450 PE=3 SV=1)

HSP 1 Score: 2475.3 bits (6414), Expect = 0.0e+00
Identity = 1197/1197 (100.00%), Postives = 1197/1197 (100.00%), Query Frame = 0


Query: 1    MGSEESEKIVVTQVSFGGFDSDVKARDLMSYLESEIGLVDRCRLKTSWTPPESYPDFEVS 60
            MGSEESEKIVVTQVSFGGFDSDVKARDLMSYLESEIGLVDRCRLKTSWTPPESYPDFEVS
Sbjct: 1    MGSEESEKIVVTQVSFGGFDSDVKARDLMSYLESEIGLVDRCRLKTSWTPPESYPDFEVS 60

Query: 61   NVANVIKSDDYKKVVPHAFVHFVSPDSAAEALHAAGRGELLFNGKLLKASLGPESPFHIN 120
            NVANVIKSDDYKKVVPHAFVHFVSPDSAAEALHAAGRGELLFNGKLLKASLGPESPFHIN
Sbjct: 61   NVANVIKSDDYKKVVPHAFVHFVSPDSAAEALHAAGRGELLFNGKLLKASLGPESPFHIN 120

Query: 121  QRRRTKVPFKLSDVQVDIGNLTCHDGFSVAWRGPSSGMDFLVDPFDGTCKFCFTKDTAFS 180
            QRRRTKVPFKLSDVQVDIGNLTCHDGFSVAWRGPSSGMDFLVDPFDGTCKFCFTKDTAFS
Sbjct: 121  QRRRTKVPFKLSDVQVDIGNLTCHDGFSVAWRGPSSGMDFLVDPFDGTCKFCFTKDTAFS 180

Query: 181  FKDNNKYTVLKCDYKLEFIVRDINQIKRYTDTSCYVILLQLTSSPCIWYRTADDDIAKSV 240
            FKDNNKYTVLKCDYKLEFIVRDINQIKRYTDTSCYVILLQLTSSPCIWYRTADDDIAKSV
Sbjct: 181  FKDNNKYTVLKCDYKLEFIVRDINQIKRYTDTSCYVILLQLTSSPCIWYRTADDDIAKSV 240

Query: 241  PYDLLDDDDPWIRTTDFTISGAIGRCNTFRVSVPPRYGIKLNNAMNYLKEQRVHQVSLNR 300
            PYDLLDDDDPWIRTTDFTISGAIGRCNTFRVSVPPRYGIKLNNAMNYLKEQRVHQVSLNR
Sbjct: 241  PYDLLDDDDPWIRTTDFTISGAIGRCNTFRVSVPPRYGIKLNNAMNYLKEQRVHQVSLNR 300

Query: 301  PPKILNEPDYGVQMTDHFFCIFYKEDISFEILFLVNAVMHKGIINQHQMSDRFFDLLRNQ 360
            PPKILNEPDYGVQMTDHFFCIFYKEDISFEILFLVNAVMHKGIINQHQMSDRFFDLLRNQ
Sbjct: 301  PPKILNEPDYGVQMTDHFFCIFYKEDISFEILFLVNAVMHKGIINQHQMSDRFFDLLRNQ 360

Query: 361  PNEVNLAALSHIHSYRRPVLDACKKLKLVQEWLLKNPTLWKRSKELVDIVEIRRLVITPS 420
            PNEVNLAALSHIHSYRRPVLDACKKLKLVQEWLLKNPTLWKRSKELVDIVEIRRLVITPS
Sbjct: 361  PNEVNLAALSHIHSYRRPVLDACKKLKLVQEWLLKNPTLWKRSKELVDIVEIRRLVITPS 420

Query: 421  KAYCFPPEVELSNRVLRRYKDVADRFLRVTFMDEGMKKINSHVYTYYVAPIVKEITSSSF 480
            KAYCFPPEVELSNRVLRRYKDVADRFLRVTFMDEGMKKINSHVYTYYVAPIVKEITSSSF
Sbjct: 421  KAYCFPPEVELSNRVLRRYKDVADRFLRVTFMDEGMKKINSHVYTYYVAPIVKEITSSSF 480

Query: 481  PQKTKIFARMKHILKHGFHLCGRKYSFLAYSSNQLRDQSAWFFAECKNISVDGILGWMGK 540
            PQKTKIFARMKHILKHGFHLCGRKYSFLAYSSNQLRDQSAWFFAECKNISVDGILGWMGK
Sbjct: 481  PQKTKIFARMKHILKHGFHLCGRKYSFLAYSSNQLRDQSAWFFAECKNISVDGILGWMGK 540

Query: 541  FTNKNVAKCAARIGQCFSSTYATIEVPRNMVNHNLQDVERNGYVFSDGIGTITPDLAQEV 600
            FTNKNVAKCAARIGQCFSSTYATIEVPRNMVNHNLQDVERNGYVFSDGIGTITPDLAQEV
Sbjct: 541  FTNKNVAKCAARIGQCFSSTYATIEVPRNMVNHNLQDVERNGYVFSDGIGTITPDLAQEV 600

Query: 601  ADKLKMDGSLPCAYQIRYAGYKGVVATWPSKEDGIRLALRPSMNKFESDHRILEICSWTR 660
            ADKLKMDGSLPCAYQIRYAGYKGVVATWPSKEDGIRLALRPSMNKFESDHRILEICSWTR
Sbjct: 601  ADKLKMDGSLPCAYQIRYAGYKGVVATWPSKEDGIRLALRPSMNKFESDHRILEICSWTR 660

Query: 661  FQPGFLNRQIITLLSTLSVPDEIFWSMQETMISKLDRMITDTDVAFEVLTASCAEQGNAA 720
            FQPGFLNRQIITLLSTLSVPDEIFWSMQETMISKLDRMITDTDVAFEVLTASCAEQGNAA
Sbjct: 661  FQPGFLNRQIITLLSTLSVPDEIFWSMQETMISKLDRMITDTDVAFEVLTASCAEQGNAA 720

Query: 721  AIMLSAGFEPRTEPHLRGMLMCIRAAQLWGLREKARIFVTEGRWCMGCFDESGVLQEGQC 780
            AIMLSAGFEPRTEPHLRGMLMCIRAAQLWGLREKARIFVTEGRWCMGCFDESGVLQEGQC
Sbjct: 721  AIMLSAGFEPRTEPHLRGMLMCIRAAQLWGLREKARIFVTEGRWCMGCFDESGVLQEGQC 780

Query: 781  FIQVSTPLLEKCFSKHGSLFAETKNNLTVVRGTVVIAKNPCLHPGDVRILEAVDAPELHH 840
            FIQVSTPLLEKCFSKHGSLFAETKNNLTVVRGTVVIAKNPCLHPGDVRILEAVDAPELHH
Sbjct: 781  FIQVSTPLLEKCFSKHGSLFAETKNNLTVVRGTVVIAKNPCLHPGDVRILEAVDAPELHH 840

Query: 841  LYDCLVFPQNGERPHTNEASGSDLDGDLYFTTWDENLIPPSKKSWPPMEYAPADVKTLQR 900
            LYDCLVFPQNGERPHTNEASGSDLDGDLYFTTWDENLIPPSKKSWPPMEYAPADVKTLQR
Sbjct: 841  LYDCLVFPQNGERPHTNEASGSDLDGDLYFTTWDENLIPPSKKSWPPMEYAPADVKTLQR 900

Query: 901  KITRLDIMEFFAKNMINESLGTICNAHVVHADRSKYGALDENCIQLSELAATAVDFPKTG 960
            KITRLDIMEFFAKNMINESLGTICNAHVVHADRSKYGALDENCIQLSELAATAVDFPKTG
Sbjct: 901  KITRLDIMEFFAKNMINESLGTICNAHVVHADRSKYGALDENCIQLSELAATAVDFPKTG 960

Query: 961  KIVTMPPHLKPKLYPDFMGKEATQSYKSTKILGKMYRRIRDAYDDDDMITSRELNFTPGD 1020
            KIVTMPPHLKPKLYPDFMGKEATQSYKSTKILGKMYRRIRDAYDDDDMITSRELNFTPGD
Sbjct: 961  KIVTMPPHLKPKLYPDFMGKEATQSYKSTKILGKMYRRIRDAYDDDDMITSRELNFTPGD 1020

Query: 1021 VHYDVDLEVAGAEDFIAEAWNQKCSYDGQLSGLLGQYKVNREEEIVTGHIWSMPKYVSRK 1080
            VHYDVDLEVAGAEDFIAEAWNQKCSYDGQLSGLLGQYKVNREEEIVTGHIWSMPKYVSRK
Sbjct: 1021 VHYDVDLEVAGAEDFIAEAWNQKCSYDGQLSGLLGQYKVNREEEIVTGHIWSMPKYVSRK 1080

Query: 1081 QGELKEKLKHSYSTLKKDFRQVFENIGPEFEQLTCDERNAFYEKKASAWYQVAYHPTWLK 1140
            QGELKEKLKHSYSTLKKDFRQVFENIGPEFEQLTCDERNAFYEKKASAWYQVAYHPTWLK
Sbjct: 1081 QGELKEKLKHSYSTLKKDFRQVFENIGPEFEQLTCDERNAFYEKKASAWYQVAYHPTWLK 1140

Query: 1141 KSLELREPDAPEAIPMLSFPWIAADYLARIKIKCRRMKSFDPTKPINSLVSYLSERI 1198
            KSLELREPDAPEAIPMLSFPWIAADYLARIKIKCRRMKSFDPTKPINSLVSYLSERI
Sbjct: 1141 KSLELREPDAPEAIPMLSFPWIAADYLARIKIKCRRMKSFDPTKPINSLVSYLSERI 1197

[Close]

BLAST of IVF0016227 vs. ExPASy TrEMBL
Match: E9NWL0 (RNA-dependent RNA polymerase OS=Cucumis sativus OX=3659 GN=Csa_2G381730 PE=2 SV=1)

HSP 1 Score: 2411.7 bits (6249), Expect = 0.0e+00
Identity = 1162/1197 (97.08%), Postives = 1182/1197 (98.75%), Query Frame = 0


Query: 1    MGSEESEKIVVTQVSFGGFDSDVKARDLMSYLESEIGLVDRCRLKTSWTPPESYPDFEVS 60
            MGSEE EKIVVTQVSFGGFDSDVKARDLMSYLESEIGLVDRCRLKTSWTPPESYPDFEVS
Sbjct: 1    MGSEEGEKIVVTQVSFGGFDSDVKARDLMSYLESEIGLVDRCRLKTSWTPPESYPDFEVS 60

Query: 61   NVANVIKSDDYKKVVPHAFVHFVSPDSAAEALHAAGRGELLFNGKLLKASLGPESPFHIN 120
            NVANVIKSDDYKKVVPHAFVHFVSPDSAAEALHAAGRGEL+FN KLLKASLGPESPFHIN
Sbjct: 61   NVANVIKSDDYKKVVPHAFVHFVSPDSAAEALHAAGRGELIFNDKLLKASLGPESPFHIN 120

Query: 121  QRRRTKVPFKLSDVQVDIGNLTCHDGFSVAWRGPSSGMDFLVDPFDGTCKFCFTKDTAFS 180
            QRRRTKVPFKLSDVQVDIGNLTCHDGFSVAWRGPSSGMDFLVDPFDGTCKFCFTKDTAFS
Sbjct: 121  QRRRTKVPFKLSDVQVDIGNLTCHDGFSVAWRGPSSGMDFLVDPFDGTCKFCFTKDTAFS 180

Query: 181  FKDNNKYTVLKCDYKLEFIVRDINQIKRYTDTSCYVILLQLTSSPCIWYRTADDDIAKSV 240
            FKDNNK+T LKCDYK+EFIVRDINQI RYTDTSCYVILLQLT+SPCIWYRTADDDIAK V
Sbjct: 181  FKDNNKHTFLKCDYKMEFIVRDINQITRYTDTSCYVILLQLTASPCIWYRTADDDIAKLV 240

Query: 241  PYDLLDDDDPWIRTTDFTISGAIGRCNTFRVSVPPRYGIKLNNAMNYLKEQRVHQVSLNR 300
            PYDLLDDDDPWIRTTDFTISGAIGRCNTFRVSVPPRYGIKLNNAMNYLKEQRVHQVSLNR
Sbjct: 241  PYDLLDDDDPWIRTTDFTISGAIGRCNTFRVSVPPRYGIKLNNAMNYLKEQRVHQVSLNR 300

Query: 301  PPKILNEPDYGVQMTDHFFCIFYKEDISFEILFLVNAVMHKGIINQHQMSDRFFDLLRNQ 360
            PPKILNEPDYGVQMTDHFFCI YK+DISFEILFLVNAVMHKGIINQHQMSDRFFDLLRNQ
Sbjct: 301  PPKILNEPDYGVQMTDHFFCILYKKDISFEILFLVNAVMHKGIINQHQMSDRFFDLLRNQ 360

Query: 361  PNEVNLAALSHIHSYRRPVLDACKKLKLVQEWLLKNPTLWKRSKELVDIVEIRRLVITPS 420
            PNEVNLAALSHIH++RRPVLDACKKLKLVQEWLLKNPTL KRSKELVDIVEIRRLVITPS
Sbjct: 361  PNEVNLAALSHIHAFRRPVLDACKKLKLVQEWLLKNPTLLKRSKELVDIVEIRRLVITPS 420

Query: 421  KAYCFPPEVELSNRVLRRYKDVADRFLRVTFMDEGMKKINSHVYTYYVAPIVKEITSSSF 480
            KAYCFPPEVELSNRVLRRYKDVADRFLRVTFMDEGMKKINSHVYTYYVAPIVKEITSSSF
Sbjct: 421  KAYCFPPEVELSNRVLRRYKDVADRFLRVTFMDEGMKKINSHVYTYYVAPIVKEITSSSF 480

Query: 481  PQKTKIFARMKHILKHGFHLCGRKYSFLAYSSNQLRDQSAWFFAECKNISVDGILGWMGK 540
            PQKTKIFARMKHILKHGFHLCGRKYSFLAYSSNQLRDQSAWFFAECK+ISVD ILGWMGK
Sbjct: 481  PQKTKIFARMKHILKHGFHLCGRKYSFLAYSSNQLRDQSAWFFAECKSISVDAILGWMGK 540

Query: 541  FTNKNVAKCAARIGQCFSSTYATIEVPRNMVNHNLQDVERNGYVFSDGIGTITPDLAQEV 600
            FTNKNVAKCAARIGQCFSSTYATIEVPRNMVNH+L DVERNGYVFSDGIGTITPDLAQEV
Sbjct: 541  FTNKNVAKCAARIGQCFSSTYATIEVPRNMVNHDLSDVERNGYVFSDGIGTITPDLAQEV 600

Query: 601  ADKLKMDGSLPCAYQIRYAGYKGVVATWPSKEDGIRLALRPSMNKFESDHRILEICSWTR 660
            ADKLKMDGS PCAYQIRYAGYKGVVATWPSK+DGIRLALRPSMNKFES+HRILEICSWTR
Sbjct: 601  ADKLKMDGSPPCAYQIRYAGYKGVVATWPSKKDGIRLALRPSMNKFESNHRILEICSWTR 660

Query: 661  FQPGFLNRQIITLLSTLSVPDEIFWSMQETMISKLDRMITDTDVAFEVLTASCAEQGNAA 720
            FQPGFLNRQIITLLSTLSVPDEIFWSMQETMISKLDRMITDTDVAFEVLTASCAEQGNAA
Sbjct: 661  FQPGFLNRQIITLLSTLSVPDEIFWSMQETMISKLDRMITDTDVAFEVLTASCAEQGNAA 720

Query: 721  AIMLSAGFEPRTEPHLRGMLMCIRAAQLWGLREKARIFVTEGRWCMGCFDESGVLQEGQC 780
            AIMLSAGFEPRTEPHLRGMLMCIRAAQLWGLREKARIFVTEGRWCMGCFDESGVLQEGQC
Sbjct: 721  AIMLSAGFEPRTEPHLRGMLMCIRAAQLWGLREKARIFVTEGRWCMGCFDESGVLQEGQC 780

Query: 781  FIQVSTPLLEKCFSKHGSLFAETKNNLTVVRGTVVIAKNPCLHPGDVRILEAVDAPELHH 840
            FIQVSTPLLEKCFSKHGSLFAETKNNLTVVRGTVVIAKNPCLHPGDVRILEAVDAPELHH
Sbjct: 781  FIQVSTPLLEKCFSKHGSLFAETKNNLTVVRGTVVIAKNPCLHPGDVRILEAVDAPELHH 840

Query: 841  LYDCLVFPQNGERPHTNEASGSDLDGDLYFTTWDENLIPPSKKSWPPMEYAPADVKTLQR 900
            LYDCLVFP+NGERPHTNEASGSDLDGDLYFTTWD NLIPPSKKSWPPMEYAPA+VKTLQR
Sbjct: 841  LYDCLVFPRNGERPHTNEASGSDLDGDLYFTTWDGNLIPPSKKSWPPMEYAPAEVKTLQR 900

Query: 901  KITRLDIMEFFAKNMINESLGTICNAHVVHADRSKYGALDENCIQLSELAATAVDFPKTG 960
            KITR DIMEFFAKNMINESLGTICNAHVVHADRSK+GALDENCIQLSELAATAVDFPKTG
Sbjct: 901  KITRWDIMEFFAKNMINESLGTICNAHVVHADRSKHGALDENCIQLSELAATAVDFPKTG 960

Query: 961  KIVTMPPHLKPKLYPDFMGKEATQSYKSTKILGKMYRRIRDAYDDDDMITSRELNFTPGD 1020
            K+VTMPPHLKPKLYPDFMGKEATQSYKSTKILGKMYRRIRDAYDDDDMITSRELNFTPGD
Sbjct: 961  KLVTMPPHLKPKLYPDFMGKEATQSYKSTKILGKMYRRIRDAYDDDDMITSRELNFTPGD 1020

Query: 1021 VHYDVDLEVAGAEDFIAEAWNQKCSYDGQLSGLLGQYKVNREEEIVTGHIWSMPKYVSRK 1080
            VHYDVDLEVAGAEDFIAEAW+QKCSYDGQLSGLLGQYKVNREEEIVTGHIWSMPKYVSRK
Sbjct: 1021 VHYDVDLEVAGAEDFIAEAWDQKCSYDGQLSGLLGQYKVNREEEIVTGHIWSMPKYVSRK 1080

Query: 1081 QGELKEKLKHSYSTLKKDFRQVFENIGPEFEQLTCDERNAFYEKKASAWYQVAYHPTWLK 1140
            QGELKEKLKHSYSTLKKDFRQVFEN+GPEFEQLTCDERNA YEKKASAWYQVAYHPTWLK
Sbjct: 1081 QGELKEKLKHSYSTLKKDFRQVFENLGPEFEQLTCDERNALYEKKASAWYQVAYHPTWLK 1140

Query: 1141 KSLELREPDAPEAIPMLSFPWIAADYLARIKIKCRRMKSFDPTKPINSLVSYLSERI 1198
            KSLELREPDAPEA+PMLSFPWIAADYLARIKIKCRR KSFDPTKPINSL SYLS+R+
Sbjct: 1141 KSLELREPDAPEAVPMLSFPWIAADYLARIKIKCRRTKSFDPTKPINSLASYLSDRM 1197

[Close]

BLAST of IVF0016227 vs. ExPASy TrEMBL
Match: A0A6J1HBE9 (RNA-dependent RNA polymerase OS=Cucurbita moschata OX=3662 GN=LOC111462552 PE=3 SV=1)

HSP 1 Score: 2288.8 bits (5930), Expect = 0.0e+00
Identity = 1093/1197 (91.31%), Postives = 1149/1197 (95.99%), Query Frame = 0


Query: 1    MGSEESEKIVVTQVSFGGFDSDVKARDLMSYLESEIGLVDRCRLKTSWTPPESYPDFEVS 60
            MGSEESEKIVVTQVS GGFDSDVKA+DLMSYLESEIGLVDRCRLKTSWTPPESYPDF++ 
Sbjct: 1    MGSEESEKIVVTQVSIGGFDSDVKAQDLMSYLESEIGLVDRCRLKTSWTPPESYPDFDIV 60

Query: 61   NVANVIKSDDYKKVVPHAFVHFVSPDSAAEALHAAGRGELLFNGKLLKASLGPESPFHIN 120
            NVA+V+KSDDYKKVVPHAFVHF  PDSAA ALHAAGR EL  N +LLK SLGPESP+H+N
Sbjct: 61   NVADVVKSDDYKKVVPHAFVHFALPDSAAGALHAAGRNELFLNDRLLKVSLGPESPYHVN 120

Query: 121  QRRRTKVPFKLSDVQVDIGNLTCHDGFSVAWRGPSSGMDFLVDPFDGTCKFCFTKDTAFS 180
            QRRRTKVPFKLS+V VDIGNLTC DGFSVAWRGPSSGMDFLVDPFDGTCKFCFT+DTAFS
Sbjct: 121  QRRRTKVPFKLSNVLVDIGNLTCQDGFSVAWRGPSSGMDFLVDPFDGTCKFCFTRDTAFS 180

Query: 181  FKDNNKYTVLKCDYKLEFIVRDINQIKRYTDTSCYVILLQLTSSPCIWYRTADDDIAKSV 240
            FKDNNK+TVLKCDYK+EF+VRDINQIKRYTD  CYVILLQLTSSPCIWYRTADDDIAKSV
Sbjct: 181  FKDNNKHTVLKCDYKVEFLVRDINQIKRYTDILCYVILLQLTSSPCIWYRTADDDIAKSV 240

Query: 241  PYDLLDDDDPWIRTTDFTISGAIGRCNTFRVSVPPRYGIKLNNAMNYLKEQRVHQVSLNR 300
            PYDLLDDDDPWIRTTDFTISGAIGRCNT+RVSVPPRYGIKLNNAMNYLKEQRVHQ SL R
Sbjct: 241  PYDLLDDDDPWIRTTDFTISGAIGRCNTYRVSVPPRYGIKLNNAMNYLKEQRVHQASLKR 300

Query: 301  PPKILNEPDYGVQMTDHFFCIFYKEDISFEILFLVNAVMHKGIINQHQMSDRFFDLLRNQ 360
            PPKILNEPDYGVQMTDHFFCI YKEDISFE+LFLVNAVMHKGIINQHQM+DRFFDLLRNQ
Sbjct: 301  PPKILNEPDYGVQMTDHFFCIHYKEDISFELLFLVNAVMHKGIINQHQMTDRFFDLLRNQ 360

Query: 361  PNEVNLAALSHIHSYRRPVLDACKKLKLVQEWLLKNPTLWKRSKELVDIVEIRRLVITPS 420
            PNEV+LAALSHIH+YR PV DACK+LKLVQEWLLKNP LWKRSKELVDI+EIRRLVITPS
Sbjct: 361  PNEVSLAALSHIHTYRHPVPDACKRLKLVQEWLLKNPRLWKRSKELVDIIEIRRLVITPS 420

Query: 421  KAYCFPPEVELSNRVLRRYKDVADRFLRVTFMDEGMKKINSHVYTYYVAPIVKEITSSSF 480
            KAYCFPPEVELSNRVLRR+KDVADRFLRVTFMDEGMKKINSHVYTYYVAPIVKEITSSSF
Sbjct: 421  KAYCFPPEVELSNRVLRRFKDVADRFLRVTFMDEGMKKINSHVYTYYVAPIVKEITSSSF 480

Query: 481  PQKTKIFARMKHILKHGFHLCGRKYSFLAYSSNQLRDQSAWFFAECKNISVDGILGWMGK 540
            PQKTK+F RMKHILKHGF+LCGRKYSFLAYSSNQLRDQSAWFF+ECK+++VD IL WMG+
Sbjct: 481  PQKTKVFGRMKHILKHGFYLCGRKYSFLAYSSNQLRDQSAWFFSECKDVTVDSILRWMGR 540

Query: 541  FTNKNVAKCAARIGQCFSSTYATIEVPRNMVNHNLQDVERNGYVFSDGIGTITPDLAQEV 600
            FTNKNVAKCAARIGQCFSSTYATIEVPRNMVNH L DVERN Y+FSDGIGTITPDLAQEV
Sbjct: 541  FTNKNVAKCAARIGQCFSSTYATIEVPRNMVNHQLPDVERNDYIFSDGIGTITPDLAQEV 600

Query: 601  ADKLKMDGSLPCAYQIRYAGYKGVVATWPSKEDGIRLALRPSMNKFESDHRILEICSWTR 660
            ADKLK+ GS PCAYQIRYAG KGVVA+WPSK DGIRLALRPSMNKF+SDHRILEICSWTR
Sbjct: 601  ADKLKLGGSPPCAYQIRYAGCKGVVASWPSKGDGIRLALRPSMNKFQSDHRILEICSWTR 660

Query: 661  FQPGFLNRQIITLLSTLSVPDEIFWSMQETMISKLDRMITDTDVAFEVLTASCAEQGNAA 720
            FQPGFLNRQIITLLSTL+VPDEIFWSMQETM+SKLDRMITDTDVAF+VLTASCAEQGNAA
Sbjct: 661  FQPGFLNRQIITLLSTLNVPDEIFWSMQETMVSKLDRMITDTDVAFDVLTASCAEQGNAA 720

Query: 721  AIMLSAGFEPRTEPHLRGMLMCIRAAQLWGLREKARIFVTEGRWCMGCFDESGVLQEGQC 780
            AIMLSAGFEP+TEPHLRGMLMCIRAAQLWGLREKARIFVT+GRWCMGCFDES VLQ GQC
Sbjct: 721  AIMLSAGFEPQTEPHLRGMLMCIRAAQLWGLREKARIFVTDGRWCMGCFDESAVLQGGQC 780

Query: 781  FIQVSTPLLEKCFSKHGSLFAETKNNLTVVRGTVVIAKNPCLHPGDVRILEAVDAPELHH 840
            FIQVSTPLLE+CFSKHGSLF ETKNNLTV+RGTVVIAKNPCLHPGDVRILEAVDAPELHH
Sbjct: 781  FIQVSTPLLERCFSKHGSLFDETKNNLTVIRGTVVIAKNPCLHPGDVRILEAVDAPELHH 840

Query: 841  LYDCLVFPQNGERPHTNEASGSDLDGDLYFTTWDENLIPPSKKSWPPMEYAPADVKTLQR 900
            LYDCLVFPQNGERPHTNEASGSDLDGDLYF TWDENLIPPS+KSWPPM Y  A+VKTL R
Sbjct: 841  LYDCLVFPQNGERPHTNEASGSDLDGDLYFITWDENLIPPSRKSWPPMNYVAAEVKTLTR 900

Query: 901  KITRLDIMEFFAKNMINESLGTICNAHVVHADRSKYGALDENCIQLSELAATAVDFPKTG 960
            ++TRLDIMEFFAKNMINESLGTICNAHVVHADRS+YGALDENCI+LSELAATAVDFPKTG
Sbjct: 901  EVTRLDIMEFFAKNMINESLGTICNAHVVHADRSEYGALDENCIKLSELAATAVDFPKTG 960

Query: 961  KIVTMPPHLKPKLYPDFMGKEATQSYKSTKILGKMYRRIRDAYDDDDMITSRELNFTPGD 1020
            KIVTMPPHLKPKLYPDFMGK+ATQSYKSTKILG+MYRRIRDAY D+DMIT+ ELNFTPGD
Sbjct: 961  KIVTMPPHLKPKLYPDFMGKQATQSYKSTKILGRMYRRIRDAY-DEDMITACELNFTPGD 1020

Query: 1021 VHYDVDLEVAGAEDFIAEAWNQKCSYDGQLSGLLGQYKVNREEEIVTGHIWSMPKYVSRK 1080
            V+YDVDLEVAGA DFIAEAWNQKCSYDGQLSGLLGQYKV+REEEIVTGHIWSMPKY SRK
Sbjct: 1021 VYYDVDLEVAGAADFIAEAWNQKCSYDGQLSGLLGQYKVSREEEIVTGHIWSMPKYSSRK 1080

Query: 1081 QGELKEKLKHSYSTLKKDFRQVFENIGPEFEQLTCDERNAFYEKKASAWYQVAYHPTWLK 1140
            QGELKEKLKHSYSTLKK+FRQVFENIGPEFEQLT DERNA YE+KASAWYQVAYHPTWLK
Sbjct: 1081 QGELKEKLKHSYSTLKKEFRQVFENIGPEFEQLTDDERNALYERKASAWYQVAYHPTWLK 1140

Query: 1141 KSLELREPDAPEAIPMLSFPWIAADYLARIKIKCRRMKSFDPTKPINSLVSYLSERI 1198
            KS+ELREPD  EA PMLSFPWIAADYLARIKIKCR+MKSFDPTKPINSL SYLS+RI
Sbjct: 1141 KSMELREPDISEATPMLSFPWIAADYLARIKIKCRKMKSFDPTKPINSLASYLSDRI 1196

[Close]

BLAST of IVF0016227 vs. ExPASy TrEMBL
Match: A0A6J1K8Y0 (RNA-dependent RNA polymerase OS=Cucurbita maxima OX=3661 GN=LOC111491746 PE=3 SV=1)

HSP 1 Score: 2273.8 bits (5891), Expect = 0.0e+00
Identity = 1085/1197 (90.64%), Postives = 1145/1197 (95.66%), Query Frame = 0


Query: 1    MGSEESEKIVVTQVSFGGFDSDVKARDLMSYLESEIGLVDRCRLKTSWTPPESYPDFEVS 60
            MGSEESEKIVVTQVS GGFDSDVKA+DLMSYLESEIGLVDRCRLKTSWTPPESYPDF++ 
Sbjct: 1    MGSEESEKIVVTQVSIGGFDSDVKAQDLMSYLESEIGLVDRCRLKTSWTPPESYPDFDIV 60

Query: 61   NVANVIKSDDYKKVVPHAFVHFVSPDSAAEALHAAGRGELLFNGKLLKASLGPESPFHIN 120
            NVA+VIKSDDYKKVVPHAFVHF  PDSAA ALHAAGR EL  N +LLK SLGPESP+H+N
Sbjct: 61   NVADVIKSDDYKKVVPHAFVHFALPDSAAGALHAAGRNELFLNDRLLKVSLGPESPYHVN 120

Query: 121  QRRRTKVPFKLSDVQVDIGNLTCHDGFSVAWRGPSSGMDFLVDPFDGTCKFCFTKDTAFS 180
            QRRRTKVPFKLS+V VDIGNLTC DGFSVAWRGPSSGMDFLVDPFDGTCKFCFT+DTAFS
Sbjct: 121  QRRRTKVPFKLSNVLVDIGNLTCQDGFSVAWRGPSSGMDFLVDPFDGTCKFCFTRDTAFS 180

Query: 181  FKDNNKYTVLKCDYKLEFIVRDINQIKRYTDTSCYVILLQLTSSPCIWYRTADDDIAKSV 240
            FKDNNK+TVLKCDYK+EF+VRDINQIKRYTD SCYVILLQLTSSPCIWYRTADDDIAKSV
Sbjct: 181  FKDNNKHTVLKCDYKVEFLVRDINQIKRYTDISCYVILLQLTSSPCIWYRTADDDIAKSV 240

Query: 241  PYDLLDDDDPWIRTTDFTISGAIGRCNTFRVSVPPRYGIKLNNAMNYLKEQRVHQVSLNR 300
            PYDLLDDDDPWIRTTDFTISGAIGRCNT+RVSVPPRYGIKLNNAMNYLKEQRVHQ SL R
Sbjct: 241  PYDLLDDDDPWIRTTDFTISGAIGRCNTYRVSVPPRYGIKLNNAMNYLKEQRVHQASLKR 300

Query: 301  PPKILNEPDYGVQMTDHFFCIFYKEDISFEILFLVNAVMHKGIINQHQMSDRFFDLLRNQ 360
            PPKILNEPDYGVQ+TDHFFCI YKEDISFE+LFLVNAVMHKGIINQHQM+DRFFDLLRNQ
Sbjct: 301  PPKILNEPDYGVQITDHFFCIHYKEDISFELLFLVNAVMHKGIINQHQMTDRFFDLLRNQ 360

Query: 361  PNEVNLAALSHIHSYRRPVLDACKKLKLVQEWLLKNPTLWKRSKELVDIVEIRRLVITPS 420
            PNEV+LAALSHIH+YR PV DACK+LK VQEWLLKNP LWKRSKELVDI+EIRRLVITPS
Sbjct: 361  PNEVSLAALSHIHTYRHPVPDACKRLKHVQEWLLKNPRLWKRSKELVDIIEIRRLVITPS 420

Query: 421  KAYCFPPEVELSNRVLRRYKDVADRFLRVTFMDEGMKKINSHVYTYYVAPIVKEITSSSF 480
            KAYCFPPEVELSNRVLRR+KDVADRFLRVTFMDEGMKKINSHVYTYYVAPIVKEITSSSF
Sbjct: 421  KAYCFPPEVELSNRVLRRFKDVADRFLRVTFMDEGMKKINSHVYTYYVAPIVKEITSSSF 480

Query: 481  PQKTKIFARMKHILKHGFHLCGRKYSFLAYSSNQLRDQSAWFFAECKNISVDGILGWMGK 540
            PQKTKIF RMKHILKHGF+LCGRKYSFLAYSSNQLRDQSAWFF+ECK+++VD IL WMG+
Sbjct: 481  PQKTKIFGRMKHILKHGFYLCGRKYSFLAYSSNQLRDQSAWFFSECKDVTVDSILRWMGR 540

Query: 541  FTNKNVAKCAARIGQCFSSTYATIEVPRNMVNHNLQDVERNGYVFSDGIGTITPDLAQEV 600
            FTNKNVAKCAARIGQCFSSTYATIEVPRNMV+H L DVERN Y+FSDGIGTITPDLAQEV
Sbjct: 541  FTNKNVAKCAARIGQCFSSTYATIEVPRNMVDHQLPDVERNDYIFSDGIGTITPDLAQEV 600

Query: 601  ADKLKMDGSLPCAYQIRYAGYKGVVATWPSKEDGIRLALRPSMNKFESDHRILEICSWTR 660
            ADKLK+ GS PCAYQIRYAG KGVVA+WPSK DGIRLALRPSMNKF+SDHRILEICSWTR
Sbjct: 601  ADKLKLGGSPPCAYQIRYAGCKGVVASWPSKGDGIRLALRPSMNKFQSDHRILEICSWTR 660

Query: 661  FQPGFLNRQIITLLSTLSVPDEIFWSMQETMISKLDRMITDTDVAFEVLTASCAEQGNAA 720
            FQPGFLNRQIITLLSTL+VPDE FWSMQETM+SKLDRMITDT+VAF+VLTASCAEQGNAA
Sbjct: 661  FQPGFLNRQIITLLSTLNVPDENFWSMQETMVSKLDRMITDTNVAFDVLTASCAEQGNAA 720

Query: 721  AIMLSAGFEPRTEPHLRGMLMCIRAAQLWGLREKARIFVTEGRWCMGCFDESGVLQEGQC 780
            AIMLSAGFEP+TEPHLRGMLMCIRAAQLWGLREKARIFVT+GRWCMGCFDES VLQEGQC
Sbjct: 721  AIMLSAGFEPQTEPHLRGMLMCIRAAQLWGLREKARIFVTDGRWCMGCFDESAVLQEGQC 780

Query: 781  FIQVSTPLLEKCFSKHGSLFAETKNNLTVVRGTVVIAKNPCLHPGDVRILEAVDAPELHH 840
            FIQVSTPLLE+CFSKHGSLF ETKNNLTV+RGTVVIAKNPCLHPGDVRILEAVDAPELHH
Sbjct: 781  FIQVSTPLLERCFSKHGSLFDETKNNLTVIRGTVVIAKNPCLHPGDVRILEAVDAPELHH 840

Query: 841  LYDCLVFPQNGERPHTNEASGSDLDGDLYFTTWDENLIPPSKKSWPPMEYAPADVKTLQR 900
            LYDCLVFPQNGERPHTNEASGSDLDGDLYF TWDENLIPPS+KSWPPM Y  A+VKTL R
Sbjct: 841  LYDCLVFPQNGERPHTNEASGSDLDGDLYFITWDENLIPPSRKSWPPMNYVAAEVKTLTR 900

Query: 901  KITRLDIMEFFAKNMINESLGTICNAHVVHADRSKYGALDENCIQLSELAATAVDFPKTG 960
            ++TRLDIMEFFAKNMINESLGTICNAHVVHADRS+YGALDENCI+LSELAATAVDFPKTG
Sbjct: 901  EVTRLDIMEFFAKNMINESLGTICNAHVVHADRSEYGALDENCIKLSELAATAVDFPKTG 960

Query: 961  KIVTMPPHLKPKLYPDFMGKEATQSYKSTKILGKMYRRIRDAYDDDDMITSRELNFTPGD 1020
            KIVTMPPHLKPKLYPDFMGK+ATQSYKSTKILG+MYRRIRD Y D+DMIT+ ELNFTPGD
Sbjct: 961  KIVTMPPHLKPKLYPDFMGKQATQSYKSTKILGRMYRRIRDVY-DEDMITACELNFTPGD 1020

Query: 1021 VHYDVDLEVAGAEDFIAEAWNQKCSYDGQLSGLLGQYKVNREEEIVTGHIWSMPKYVSRK 1080
            V+YDVDLEVAGA DFIAEAWNQKCSYDGQLSGLLGQYKV+REEEIVTGHIWSMPKY SRK
Sbjct: 1021 VYYDVDLEVAGAADFIAEAWNQKCSYDGQLSGLLGQYKVSREEEIVTGHIWSMPKYSSRK 1080

Query: 1081 QGELKEKLKHSYSTLKKDFRQVFENIGPEFEQLTCDERNAFYEKKASAWYQVAYHPTWLK 1140
            QGELKEKLKHSY+TLKK+FRQVFENIGPEFEQLT DERNA YE+KASAWYQV YHPTWLK
Sbjct: 1081 QGELKEKLKHSYTTLKKEFRQVFENIGPEFEQLTDDERNALYERKASAWYQVTYHPTWLK 1140

Query: 1141 KSLELREPDAPEAIPMLSFPWIAADYLARIKIKCRRMKSFDPTKPINSLVSYLSERI 1198
            KS+ELREPD  EA PMLSFPW+A DYLARIKIKCR+MKS DPTKPINSL SYLS+R+
Sbjct: 1141 KSMELREPDIAEATPMLSFPWVAVDYLARIKIKCRKMKSVDPTKPINSLASYLSDRM 1196

[Close]

BLAST of IVF0016227 vs. NCBI nr
Match: XP_008445204.1 (PREDICTED: RNA-dependent RNA polymerase 6 [Cucumis melo] >XP_016900057.1 PREDICTED: RNA-dependent RNA polymerase 6 [Cucumis melo] >KAA0064927.1 RNA-dependent RNA polymerase 6 [Cucumis melo var. makuwa])

HSP 1 Score: 2457 bits (6369), Expect = 0.0
Identity = 1197/1197 (100.00%), Postives = 1197/1197 (100.00%), Query Frame = 0


Query: 1    MGSEESEKIVVTQVSFGGFDSDVKARDLMSYLESEIGLVDRCRLKTSWTPPESYPDFEVS 60
            MGSEESEKIVVTQVSFGGFDSDVKARDLMSYLESEIGLVDRCRLKTSWTPPESYPDFEVS
Sbjct: 1    MGSEESEKIVVTQVSFGGFDSDVKARDLMSYLESEIGLVDRCRLKTSWTPPESYPDFEVS 60

Query: 61   NVANVIKSDDYKKVVPHAFVHFVSPDSAAEALHAAGRGELLFNGKLLKASLGPESPFHIN 120
            NVANVIKSDDYKKVVPHAFVHFVSPDSAAEALHAAGRGELLFNGKLLKASLGPESPFHIN
Sbjct: 61   NVANVIKSDDYKKVVPHAFVHFVSPDSAAEALHAAGRGELLFNGKLLKASLGPESPFHIN 120

Query: 121  QRRRTKVPFKLSDVQVDIGNLTCHDGFSVAWRGPSSGMDFLVDPFDGTCKFCFTKDTAFS 180
            QRRRTKVPFKLSDVQVDIGNLTCHDGFSVAWRGPSSGMDFLVDPFDGTCKFCFTKDTAFS
Sbjct: 121  QRRRTKVPFKLSDVQVDIGNLTCHDGFSVAWRGPSSGMDFLVDPFDGTCKFCFTKDTAFS 180

Query: 181  FKDNNKYTVLKCDYKLEFIVRDINQIKRYTDTSCYVILLQLTSSPCIWYRTADDDIAKSV 240
            FKDNNKYTVLKCDYKLEFIVRDINQIKRYTDTSCYVILLQLTSSPCIWYRTADDDIAKSV
Sbjct: 181  FKDNNKYTVLKCDYKLEFIVRDINQIKRYTDTSCYVILLQLTSSPCIWYRTADDDIAKSV 240

Query: 241  PYDLLDDDDPWIRTTDFTISGAIGRCNTFRVSVPPRYGIKLNNAMNYLKEQRVHQVSLNR 300
            PYDLLDDDDPWIRTTDFTISGAIGRCNTFRVSVPPRYGIKLNNAMNYLKEQRVHQVSLNR
Sbjct: 241  PYDLLDDDDPWIRTTDFTISGAIGRCNTFRVSVPPRYGIKLNNAMNYLKEQRVHQVSLNR 300

Query: 301  PPKILNEPDYGVQMTDHFFCIFYKEDISFEILFLVNAVMHKGIINQHQMSDRFFDLLRNQ 360
            PPKILNEPDYGVQMTDHFFCIFYKEDISFEILFLVNAVMHKGIINQHQMSDRFFDLLRNQ
Sbjct: 301  PPKILNEPDYGVQMTDHFFCIFYKEDISFEILFLVNAVMHKGIINQHQMSDRFFDLLRNQ 360

Query: 361  PNEVNLAALSHIHSYRRPVLDACKKLKLVQEWLLKNPTLWKRSKELVDIVEIRRLVITPS 420
            PNEVNLAALSHIHSYRRPVLDACKKLKLVQEWLLKNPTLWKRSKELVDIVEIRRLVITPS
Sbjct: 361  PNEVNLAALSHIHSYRRPVLDACKKLKLVQEWLLKNPTLWKRSKELVDIVEIRRLVITPS 420

Query: 421  KAYCFPPEVELSNRVLRRYKDVADRFLRVTFMDEGMKKINSHVYTYYVAPIVKEITSSSF 480
            KAYCFPPEVELSNRVLRRYKDVADRFLRVTFMDEGMKKINSHVYTYYVAPIVKEITSSSF
Sbjct: 421  KAYCFPPEVELSNRVLRRYKDVADRFLRVTFMDEGMKKINSHVYTYYVAPIVKEITSSSF 480

Query: 481  PQKTKIFARMKHILKHGFHLCGRKYSFLAYSSNQLRDQSAWFFAECKNISVDGILGWMGK 540
            PQKTKIFARMKHILKHGFHLCGRKYSFLAYSSNQLRDQSAWFFAECKNISVDGILGWMGK
Sbjct: 481  PQKTKIFARMKHILKHGFHLCGRKYSFLAYSSNQLRDQSAWFFAECKNISVDGILGWMGK 540

Query: 541  FTNKNVAKCAARIGQCFSSTYATIEVPRNMVNHNLQDVERNGYVFSDGIGTITPDLAQEV 600
            FTNKNVAKCAARIGQCFSSTYATIEVPRNMVNHNLQDVERNGYVFSDGIGTITPDLAQEV
Sbjct: 541  FTNKNVAKCAARIGQCFSSTYATIEVPRNMVNHNLQDVERNGYVFSDGIGTITPDLAQEV 600

Query: 601  ADKLKMDGSLPCAYQIRYAGYKGVVATWPSKEDGIRLALRPSMNKFESDHRILEICSWTR 660
            ADKLKMDGSLPCAYQIRYAGYKGVVATWPSKEDGIRLALRPSMNKFESDHRILEICSWTR
Sbjct: 601  ADKLKMDGSLPCAYQIRYAGYKGVVATWPSKEDGIRLALRPSMNKFESDHRILEICSWTR 660

Query: 661  FQPGFLNRQIITLLSTLSVPDEIFWSMQETMISKLDRMITDTDVAFEVLTASCAEQGNAA 720
            FQPGFLNRQIITLLSTLSVPDEIFWSMQETMISKLDRMITDTDVAFEVLTASCAEQGNAA
Sbjct: 661  FQPGFLNRQIITLLSTLSVPDEIFWSMQETMISKLDRMITDTDVAFEVLTASCAEQGNAA 720

Query: 721  AIMLSAGFEPRTEPHLRGMLMCIRAAQLWGLREKARIFVTEGRWCMGCFDESGVLQEGQC 780
            AIMLSAGFEPRTEPHLRGMLMCIRAAQLWGLREKARIFVTEGRWCMGCFDESGVLQEGQC
Sbjct: 721  AIMLSAGFEPRTEPHLRGMLMCIRAAQLWGLREKARIFVTEGRWCMGCFDESGVLQEGQC 780

Query: 781  FIQVSTPLLEKCFSKHGSLFAETKNNLTVVRGTVVIAKNPCLHPGDVRILEAVDAPELHH 840
            FIQVSTPLLEKCFSKHGSLFAETKNNLTVVRGTVVIAKNPCLHPGDVRILEAVDAPELHH
Sbjct: 781  FIQVSTPLLEKCFSKHGSLFAETKNNLTVVRGTVVIAKNPCLHPGDVRILEAVDAPELHH 840

Query: 841  LYDCLVFPQNGERPHTNEASGSDLDGDLYFTTWDENLIPPSKKSWPPMEYAPADVKTLQR 900
            LYDCLVFPQNGERPHTNEASGSDLDGDLYFTTWDENLIPPSKKSWPPMEYAPADVKTLQR
Sbjct: 841  LYDCLVFPQNGERPHTNEASGSDLDGDLYFTTWDENLIPPSKKSWPPMEYAPADVKTLQR 900

Query: 901  KITRLDIMEFFAKNMINESLGTICNAHVVHADRSKYGALDENCIQLSELAATAVDFPKTG 960
            KITRLDIMEFFAKNMINESLGTICNAHVVHADRSKYGALDENCIQLSELAATAVDFPKTG
Sbjct: 901  KITRLDIMEFFAKNMINESLGTICNAHVVHADRSKYGALDENCIQLSELAATAVDFPKTG 960

Query: 961  KIVTMPPHLKPKLYPDFMGKEATQSYKSTKILGKMYRRIRDAYDDDDMITSRELNFTPGD 1020
            KIVTMPPHLKPKLYPDFMGKEATQSYKSTKILGKMYRRIRDAYDDDDMITSRELNFTPGD
Sbjct: 961  KIVTMPPHLKPKLYPDFMGKEATQSYKSTKILGKMYRRIRDAYDDDDMITSRELNFTPGD 1020

Query: 1021 VHYDVDLEVAGAEDFIAEAWNQKCSYDGQLSGLLGQYKVNREEEIVTGHIWSMPKYVSRK 1080
            VHYDVDLEVAGAEDFIAEAWNQKCSYDGQLSGLLGQYKVNREEEIVTGHIWSMPKYVSRK
Sbjct: 1021 VHYDVDLEVAGAEDFIAEAWNQKCSYDGQLSGLLGQYKVNREEEIVTGHIWSMPKYVSRK 1080

Query: 1081 QGELKEKLKHSYSTLKKDFRQVFENIGPEFEQLTCDERNAFYEKKASAWYQVAYHPTWLK 1140
            QGELKEKLKHSYSTLKKDFRQVFENIGPEFEQLTCDERNAFYEKKASAWYQVAYHPTWLK
Sbjct: 1081 QGELKEKLKHSYSTLKKDFRQVFENIGPEFEQLTCDERNAFYEKKASAWYQVAYHPTWLK 1140

Query: 1141 KSLELREPDAPEAIPMLSFPWIAADYLARIKIKCRRMKSFDPTKPINSLVSYLSERI 1197
            KSLELREPDAPEAIPMLSFPWIAADYLARIKIKCRRMKSFDPTKPINSLVSYLSERI
Sbjct: 1141 KSLELREPDAPEAIPMLSFPWIAADYLARIKIKCRRMKSFDPTKPINSLVSYLSERI 1197

[Close]

BLAST of IVF0016227 vs. NCBI nr
Match: NP_001267634.1 (RNA-dependent RNA polymerase 6-like [Cucumis sativus] >XP_011648568.1 RNA-dependent RNA polymerase 6-like isoform X1 [Cucumis sativus] >ADU77019.1 RNA-dependent RNA polymerase 6 [Cucumis sativus] >KGN62947.1 hypothetical protein Csa_022486 [Cucumis sativus])

HSP 1 Score: 2394 bits (6204), Expect = 0.0
Identity = 1162/1197 (97.08%), Postives = 1182/1197 (98.75%), Query Frame = 0


Query: 1    MGSEESEKIVVTQVSFGGFDSDVKARDLMSYLESEIGLVDRCRLKTSWTPPESYPDFEVS 60
            MGSEE EKIVVTQVSFGGFDSDVKARDLMSYLESEIGLVDRCRLKTSWTPPESYPDFEVS
Sbjct: 1    MGSEEGEKIVVTQVSFGGFDSDVKARDLMSYLESEIGLVDRCRLKTSWTPPESYPDFEVS 60

Query: 61   NVANVIKSDDYKKVVPHAFVHFVSPDSAAEALHAAGRGELLFNGKLLKASLGPESPFHIN 120
            NVANVIKSDDYKKVVPHAFVHFVSPDSAAEALHAAGRGEL+FN KLLKASLGPESPFHIN
Sbjct: 61   NVANVIKSDDYKKVVPHAFVHFVSPDSAAEALHAAGRGELIFNDKLLKASLGPESPFHIN 120

Query: 121  QRRRTKVPFKLSDVQVDIGNLTCHDGFSVAWRGPSSGMDFLVDPFDGTCKFCFTKDTAFS 180
            QRRRTKVPFKLSDVQVDIGNLTCHDGFSVAWRGPSSGMDFLVDPFDGTCKFCFTKDTAFS
Sbjct: 121  QRRRTKVPFKLSDVQVDIGNLTCHDGFSVAWRGPSSGMDFLVDPFDGTCKFCFTKDTAFS 180

Query: 181  FKDNNKYTVLKCDYKLEFIVRDINQIKRYTDTSCYVILLQLTSSPCIWYRTADDDIAKSV 240
            FKDNNK+T LKCDYK+EFIVRDINQI RYTDTSCYVILLQLT+SPCIWYRTADDDIAK V
Sbjct: 181  FKDNNKHTFLKCDYKMEFIVRDINQITRYTDTSCYVILLQLTASPCIWYRTADDDIAKLV 240

Query: 241  PYDLLDDDDPWIRTTDFTISGAIGRCNTFRVSVPPRYGIKLNNAMNYLKEQRVHQVSLNR 300
            PYDLLDDDDPWIRTTDFTISGAIGRCNTFRVSVPPRYGIKLNNAMNYLKEQRVHQVSLNR
Sbjct: 241  PYDLLDDDDPWIRTTDFTISGAIGRCNTFRVSVPPRYGIKLNNAMNYLKEQRVHQVSLNR 300

Query: 301  PPKILNEPDYGVQMTDHFFCIFYKEDISFEILFLVNAVMHKGIINQHQMSDRFFDLLRNQ 360
            PPKILNEPDYGVQMTDHFFCI YK+DISFEILFLVNAVMHKGIINQHQMSDRFFDLLRNQ
Sbjct: 301  PPKILNEPDYGVQMTDHFFCILYKKDISFEILFLVNAVMHKGIINQHQMSDRFFDLLRNQ 360

Query: 361  PNEVNLAALSHIHSYRRPVLDACKKLKLVQEWLLKNPTLWKRSKELVDIVEIRRLVITPS 420
            PNEVNLAALSHIH++RRPVLDACKKLKLVQEWLLKNPTL KRSKELVDIVEIRRLVITPS
Sbjct: 361  PNEVNLAALSHIHAFRRPVLDACKKLKLVQEWLLKNPTLLKRSKELVDIVEIRRLVITPS 420

Query: 421  KAYCFPPEVELSNRVLRRYKDVADRFLRVTFMDEGMKKINSHVYTYYVAPIVKEITSSSF 480
            KAYCFPPEVELSNRVLRRYKDVADRFLRVTFMDEGMKKINSHVYTYYVAPIVKEITSSSF
Sbjct: 421  KAYCFPPEVELSNRVLRRYKDVADRFLRVTFMDEGMKKINSHVYTYYVAPIVKEITSSSF 480

Query: 481  PQKTKIFARMKHILKHGFHLCGRKYSFLAYSSNQLRDQSAWFFAECKNISVDGILGWMGK 540
            PQKTKIFARMKHILKHGFHLCGRKYSFLAYSSNQLRDQSAWFFAECK+ISVD ILGWMGK
Sbjct: 481  PQKTKIFARMKHILKHGFHLCGRKYSFLAYSSNQLRDQSAWFFAECKSISVDAILGWMGK 540

Query: 541  FTNKNVAKCAARIGQCFSSTYATIEVPRNMVNHNLQDVERNGYVFSDGIGTITPDLAQEV 600
            FTNKNVAKCAARIGQCFSSTYATIEVPRNMVNH+L DVERNGYVFSDGIGTITPDLAQEV
Sbjct: 541  FTNKNVAKCAARIGQCFSSTYATIEVPRNMVNHDLSDVERNGYVFSDGIGTITPDLAQEV 600

Query: 601  ADKLKMDGSLPCAYQIRYAGYKGVVATWPSKEDGIRLALRPSMNKFESDHRILEICSWTR 660
            ADKLKMDGS PCAYQIRYAGYKGVVATWPSK+DGIRLALRPSMNKFES+HRILEICSWTR
Sbjct: 601  ADKLKMDGSPPCAYQIRYAGYKGVVATWPSKKDGIRLALRPSMNKFESNHRILEICSWTR 660

Query: 661  FQPGFLNRQIITLLSTLSVPDEIFWSMQETMISKLDRMITDTDVAFEVLTASCAEQGNAA 720
            FQPGFLNRQIITLLSTLSVPDEIFWSMQETMISKLDRMITDTDVAFEVLTASCAEQGNAA
Sbjct: 661  FQPGFLNRQIITLLSTLSVPDEIFWSMQETMISKLDRMITDTDVAFEVLTASCAEQGNAA 720

Query: 721  AIMLSAGFEPRTEPHLRGMLMCIRAAQLWGLREKARIFVTEGRWCMGCFDESGVLQEGQC 780
            AIMLSAGFEPRTEPHLRGMLMCIRAAQLWGLREKARIFVTEGRWCMGCFDESGVLQEGQC
Sbjct: 721  AIMLSAGFEPRTEPHLRGMLMCIRAAQLWGLREKARIFVTEGRWCMGCFDESGVLQEGQC 780

Query: 781  FIQVSTPLLEKCFSKHGSLFAETKNNLTVVRGTVVIAKNPCLHPGDVRILEAVDAPELHH 840
            FIQVSTPLLEKCFSKHGSLFAETKNNLTVVRGTVVIAKNPCLHPGDVRILEAVDAPELHH
Sbjct: 781  FIQVSTPLLEKCFSKHGSLFAETKNNLTVVRGTVVIAKNPCLHPGDVRILEAVDAPELHH 840

Query: 841  LYDCLVFPQNGERPHTNEASGSDLDGDLYFTTWDENLIPPSKKSWPPMEYAPADVKTLQR 900
            LYDCLVFP+NGERPHTNEASGSDLDGDLYFTTWD NLIPPSKKSWPPMEYAPA+VKTLQR
Sbjct: 841  LYDCLVFPRNGERPHTNEASGSDLDGDLYFTTWDGNLIPPSKKSWPPMEYAPAEVKTLQR 900

Query: 901  KITRLDIMEFFAKNMINESLGTICNAHVVHADRSKYGALDENCIQLSELAATAVDFPKTG 960
            KITR DIMEFFAKNMINESLGTICNAHVVHADRSK+GALDENCIQLSELAATAVDFPKTG
Sbjct: 901  KITRWDIMEFFAKNMINESLGTICNAHVVHADRSKHGALDENCIQLSELAATAVDFPKTG 960

Query: 961  KIVTMPPHLKPKLYPDFMGKEATQSYKSTKILGKMYRRIRDAYDDDDMITSRELNFTPGD 1020
            K+VTMPPHLKPKLYPDFMGKEATQSYKSTKILGKMYRRIRDAYDDDDMITSRELNFTPGD
Sbjct: 961  KLVTMPPHLKPKLYPDFMGKEATQSYKSTKILGKMYRRIRDAYDDDDMITSRELNFTPGD 1020

Query: 1021 VHYDVDLEVAGAEDFIAEAWNQKCSYDGQLSGLLGQYKVNREEEIVTGHIWSMPKYVSRK 1080
            VHYDVDLEVAGAEDFIAEAW+QKCSYDGQLSGLLGQYKVNREEEIVTGHIWSMPKYVSRK
Sbjct: 1021 VHYDVDLEVAGAEDFIAEAWDQKCSYDGQLSGLLGQYKVNREEEIVTGHIWSMPKYVSRK 1080

Query: 1081 QGELKEKLKHSYSTLKKDFRQVFENIGPEFEQLTCDERNAFYEKKASAWYQVAYHPTWLK 1140
            QGELKEKLKHSYSTLKKDFRQVFEN+GPEFEQLTCDERNA YEKKASAWYQVAYHPTWLK
Sbjct: 1081 QGELKEKLKHSYSTLKKDFRQVFENLGPEFEQLTCDERNALYEKKASAWYQVAYHPTWLK 1140

Query: 1141 KSLELREPDAPEAIPMLSFPWIAADYLARIKIKCRRMKSFDPTKPINSLVSYLSERI 1197
            KSLELREPDAPEA+PMLSFPWIAADYLARIKIKCRR KSFDPTKPINSL SYLS+R+
Sbjct: 1141 KSLELREPDAPEAVPMLSFPWIAADYLARIKIKCRRTKSFDPTKPINSLASYLSDRM 1197

[Close]

BLAST of IVF0016227 vs. NCBI nr
Match: XP_038885332.1 (RNA-dependent RNA polymerase 6 [Benincasa hispida] >XP_038885333.1 RNA-dependent RNA polymerase 6 [Benincasa hispida] >XP_038885334.1 RNA-dependent RNA polymerase 6 [Benincasa hispida] >XP_038885335.1 RNA-dependent RNA polymerase 6 [Benincasa hispida] >XP_038885336.1 RNA-dependent RNA polymerase 6 [Benincasa hispida] >XP_038885337.1 RNA-dependent RNA polymerase 6 [Benincasa hispida] >XP_038885339.1 RNA-dependent RNA polymerase 6 [Benincasa hispida])

HSP 1 Score: 2301 bits (5964), Expect = 0.0
Identity = 1111/1197 (92.82%), Postives = 1155/1197 (96.49%), Query Frame = 0


Query: 1    MGSEESEKIVVTQVSFGGFDSDVKARDLMSYLESEIGLVDRCRLKTSWTPPESYPDFEVS 60
            MGSEESEKIVVTQVS GGFDSDVKARDLMSYLESEIGLVDRCRLKTSWTPPESYPDF++S
Sbjct: 1    MGSEESEKIVVTQVSIGGFDSDVKARDLMSYLESEIGLVDRCRLKTSWTPPESYPDFDIS 60

Query: 61   NVANVIKSDDYKKVVPHAFVHFVSPDSAAEALHAAGRGELLFNGKLLKASLGPESPFHIN 120
            NVA+V+KSDDYKKVVPHAFVHF SPDSAA ALHAAGR EL  N KLLK SLGPESP+HIN
Sbjct: 61   NVADVLKSDDYKKVVPHAFVHFASPDSAAGALHAAGRSELFLNDKLLKVSLGPESPYHIN 120

Query: 121  QRRRTKVPFKLSDVQVDIGNLTCHDGFSVAWRGPSSGMDFLVDPFDGTCKFCFTKDTAFS 180
            QRRRTKVPFKLSDVQVDIGNLTCHDGFSVAWRGPSSGM+FLVDPFDGTCKFCFTKDTAFS
Sbjct: 121  QRRRTKVPFKLSDVQVDIGNLTCHDGFSVAWRGPSSGMNFLVDPFDGTCKFCFTKDTAFS 180

Query: 181  FKDNNKYTVLKCDYKLEFIVRDINQIKRYTDTSCYVILLQLTSSPCIWYRTADDDIAKSV 240
            FKDNNK+TVLKCDYK+EF+VRDINQIKRYTD SCYVILLQLTSSPCIWYRTADDDIAKSV
Sbjct: 181  FKDNNKHTVLKCDYKVEFLVRDINQIKRYTDMSCYVILLQLTSSPCIWYRTADDDIAKSV 240

Query: 241  PYDLLDDDDPWIRTTDFTISGAIGRCNTFRVSVPPRYGIKLNNAMNYLKEQRVHQVSLNR 300
            PYDLLDDDDPWIRTTDFT SGAIGRCNT+RVSVPPRYGIKLNNAMNYLKEQRVHQ SLNR
Sbjct: 241  PYDLLDDDDPWIRTTDFTTSGAIGRCNTYRVSVPPRYGIKLNNAMNYLKEQRVHQASLNR 300

Query: 301  PPKILNEPDYGVQMTDHFFCIFYKEDISFEILFLVNAVMHKGIINQHQMSDRFFDLLRNQ 360
            PPKILNEPDYGVQMTDHFFCI YKED+SFEILFL+NAVMHKGIINQHQMSDRFFDLLRNQ
Sbjct: 301  PPKILNEPDYGVQMTDHFFCIHYKEDMSFEILFLINAVMHKGIINQHQMSDRFFDLLRNQ 360

Query: 361  PNEVNLAALSHIHSYRRPVLDACKKLKLVQEWLLKNPTLWKRSKELVDIVEIRRLVITPS 420
            PNEVNLAAL+HI++YRRPV DACK+L LVQEWLLKNP LWKRSK  VDI+EIRRLVITPS
Sbjct: 361  PNEVNLAALTHIYAYRRPVPDACKRLNLVQEWLLKNPRLWKRSKGQVDIIEIRRLVITPS 420

Query: 421  KAYCFPPEVELSNRVLRRYKDVADRFLRVTFMDEGMKKINSHVYTYYVAPIVKEITSSSF 480
            KAYCFPPEVELSNRVLRR+KDVADRFLRVTFMDEGMKKINSHVYTYYVAPIVKEITSSSF
Sbjct: 421  KAYCFPPEVELSNRVLRRFKDVADRFLRVTFMDEGMKKINSHVYTYYVAPIVKEITSSSF 480

Query: 481  PQKTKIFARMKHILKHGFHLCGRKYSFLAYSSNQLRDQSAWFFAECKNISVDGILGWMGK 540
            PQKTKIF RMKHILKHGF+LCGRKYSFLAYSSNQLRDQSAWFF+ECKN++VD IL WMG+
Sbjct: 481  PQKTKIFGRMKHILKHGFYLCGRKYSFLAYSSNQLRDQSAWFFSECKNVTVDSILRWMGR 540

Query: 541  FTNKNVAKCAARIGQCFSSTYATIEVPRNMVNHNLQDVERNGYVFSDGIGTITPDLAQEV 600
            FT+KNVAKCAARIGQCFSSTYATIEVPRNMVNH+L DVERNGYVFSDGIGTITPDLAQEV
Sbjct: 541  FTHKNVAKCAARIGQCFSSTYATIEVPRNMVNHDLPDVERNGYVFSDGIGTITPDLAQEV 600

Query: 601  ADKLKMDGSLPCAYQIRYAGYKGVVATWPSKEDGIRLALRPSMNKFESDHRILEICSWTR 660
            ADKLK+DG+ PCAYQIRYAG KGVVATWPSK DGIRLALRPSMNKF+SDHRILEICSWTR
Sbjct: 601  ADKLKLDGTPPCAYQIRYAGCKGVVATWPSKGDGIRLALRPSMNKFQSDHRILEICSWTR 660

Query: 661  FQPGFLNRQIITLLSTLSVPDEIFWSMQETMISKLDRMITDTDVAFEVLTASCAEQGNAA 720
            FQPGFLNRQIITLLSTLSVPDEIFWSMQETM+SKLDRMITDTDVAF+VLTASCAEQGNAA
Sbjct: 661  FQPGFLNRQIITLLSTLSVPDEIFWSMQETMVSKLDRMITDTDVAFDVLTASCAEQGNAA 720

Query: 721  AIMLSAGFEPRTEPHLRGMLMCIRAAQLWGLREKARIFVTEGRWCMGCFDESGVLQEGQC 780
            AIMLSAGFEPRTEPHLRGMLMCIRAAQLWGLREKARIFVTEGRWCMGCFDESGVLQEGQC
Sbjct: 721  AIMLSAGFEPRTEPHLRGMLMCIRAAQLWGLREKARIFVTEGRWCMGCFDESGVLQEGQC 780

Query: 781  FIQVSTPLLEKCFSKHGSLFAETKNNLTVVRGTVVIAKNPCLHPGDVRILEAVDAPELHH 840
            FIQVSTPLL +CFSKHGSLFAE KNNLTVVRGTVVIAKNPCLHPGDVRILEAVDAPELHH
Sbjct: 781  FIQVSTPLLAQCFSKHGSLFAEIKNNLTVVRGTVVIAKNPCLHPGDVRILEAVDAPELHH 840

Query: 841  LYDCLVFPQNGERPHTNEASGSDLDGDLYFTTWDENLIPPSKKSWPPMEYAPADVKTLQR 900
            +YDCLVFPQNGERPHTNEASGSDLDGDLYF TWDENLIPPSK+SWPPMEYAPA+VKTL R
Sbjct: 841  MYDCLVFPQNGERPHTNEASGSDLDGDLYFITWDENLIPPSKRSWPPMEYAPAEVKTLTR 900

Query: 901  KITRLDIMEFFAKNMINESLGTICNAHVVHADRSKYGALDENCIQLSELAATAVDFPKTG 960
            ++TR DIMEFFAKNMINESLGTICNAHVVHADRS+YGALDENCIQLSELAATAVDFPKTG
Sbjct: 901  QVTRWDIMEFFAKNMINESLGTICNAHVVHADRSEYGALDENCIQLSELAATAVDFPKTG 960

Query: 961  KIVTMPPHLKPKLYPDFMGKEATQSYKSTKILGKMYRRIRDAYDDDDMITSRELNFTPGD 1020
            KIVTMPPHLKPKLYPDFMGKE TQSYKSTKILG+MYRRIRDAYDDD MITS ELNFTPGD
Sbjct: 961  KIVTMPPHLKPKLYPDFMGKEDTQSYKSTKILGRMYRRIRDAYDDD-MITSCELNFTPGD 1020

Query: 1021 VHYDVDLEVAGAEDFIAEAWNQKCSYDGQLSGLLGQYKVNREEEIVTGHIWSMPKYVSRK 1080
            VHYDVDLEVAGAEDFIAEAWNQKCSYDGQLSGLLGQYKVNREEEIVTGHIWSMPKY SRK
Sbjct: 1021 VHYDVDLEVAGAEDFIAEAWNQKCSYDGQLSGLLGQYKVNREEEIVTGHIWSMPKYSSRK 1080

Query: 1081 QGELKEKLKHSYSTLKKDFRQVFENIGPEFEQLTCDERNAFYEKKASAWYQVAYHPTWLK 1140
            QGELKEKLKHSYSTLKK+FRQVFENIGPE EQLT DERNA YE+KASAWYQVAYHPTWLK
Sbjct: 1081 QGELKEKLKHSYSTLKKEFRQVFENIGPEIEQLTDDERNALYERKASAWYQVAYHPTWLK 1140

Query: 1141 KSLELREPDAPEAIPMLSFPWIAADYLARIKIKCRRMKSFDPTKPINSLVSYLSERI 1197
            KS+ELREPD  E +PMLSFPWIAADYLARIKIKC+R KSFDPTKPINSL SYLS R+
Sbjct: 1141 KSMELREPDVLETVPMLSFPWIAADYLARIKIKCQRTKSFDPTKPINSLASYLSNRM 1196

[Close]

BLAST of IVF0016227 vs. NCBI nr
Match: XP_022961927.1 (RNA-dependent RNA polymerase 6 [Cucurbita moschata])

HSP 1 Score: 2271 bits (5886), Expect = 0.0
Identity = 1093/1197 (91.31%), Postives = 1149/1197 (95.99%), Query Frame = 0


Query: 1    MGSEESEKIVVTQVSFGGFDSDVKARDLMSYLESEIGLVDRCRLKTSWTPPESYPDFEVS 60
            MGSEESEKIVVTQVS GGFDSDVKA+DLMSYLESEIGLVDRCRLKTSWTPPESYPDF++ 
Sbjct: 1    MGSEESEKIVVTQVSIGGFDSDVKAQDLMSYLESEIGLVDRCRLKTSWTPPESYPDFDIV 60

Query: 61   NVANVIKSDDYKKVVPHAFVHFVSPDSAAEALHAAGRGELLFNGKLLKASLGPESPFHIN 120
            NVA+V+KSDDYKKVVPHAFVHF  PDSAA ALHAAGR EL  N +LLK SLGPESP+H+N
Sbjct: 61   NVADVVKSDDYKKVVPHAFVHFALPDSAAGALHAAGRNELFLNDRLLKVSLGPESPYHVN 120

Query: 121  QRRRTKVPFKLSDVQVDIGNLTCHDGFSVAWRGPSSGMDFLVDPFDGTCKFCFTKDTAFS 180
            QRRRTKVPFKLS+V VDIGNLTC DGFSVAWRGPSSGMDFLVDPFDGTCKFCFT+DTAFS
Sbjct: 121  QRRRTKVPFKLSNVLVDIGNLTCQDGFSVAWRGPSSGMDFLVDPFDGTCKFCFTRDTAFS 180

Query: 181  FKDNNKYTVLKCDYKLEFIVRDINQIKRYTDTSCYVILLQLTSSPCIWYRTADDDIAKSV 240
            FKDNNK+TVLKCDYK+EF+VRDINQIKRYTD  CYVILLQLTSSPCIWYRTADDDIAKSV
Sbjct: 181  FKDNNKHTVLKCDYKVEFLVRDINQIKRYTDILCYVILLQLTSSPCIWYRTADDDIAKSV 240

Query: 241  PYDLLDDDDPWIRTTDFTISGAIGRCNTFRVSVPPRYGIKLNNAMNYLKEQRVHQVSLNR 300
            PYDLLDDDDPWIRTTDFTISGAIGRCNT+RVSVPPRYGIKLNNAMNYLKEQRVHQ SL R
Sbjct: 241  PYDLLDDDDPWIRTTDFTISGAIGRCNTYRVSVPPRYGIKLNNAMNYLKEQRVHQASLKR 300

Query: 301  PPKILNEPDYGVQMTDHFFCIFYKEDISFEILFLVNAVMHKGIINQHQMSDRFFDLLRNQ 360
            PPKILNEPDYGVQMTDHFFCI YKEDISFE+LFLVNAVMHKGIINQHQM+DRFFDLLRNQ
Sbjct: 301  PPKILNEPDYGVQMTDHFFCIHYKEDISFELLFLVNAVMHKGIINQHQMTDRFFDLLRNQ 360

Query: 361  PNEVNLAALSHIHSYRRPVLDACKKLKLVQEWLLKNPTLWKRSKELVDIVEIRRLVITPS 420
            PNEV+LAALSHIH+YR PV DACK+LKLVQEWLLKNP LWKRSKELVDI+EIRRLVITPS
Sbjct: 361  PNEVSLAALSHIHTYRHPVPDACKRLKLVQEWLLKNPRLWKRSKELVDIIEIRRLVITPS 420

Query: 421  KAYCFPPEVELSNRVLRRYKDVADRFLRVTFMDEGMKKINSHVYTYYVAPIVKEITSSSF 480
            KAYCFPPEVELSNRVLRR+KDVADRFLRVTFMDEGMKKINSHVYTYYVAPIVKEITSSSF
Sbjct: 421  KAYCFPPEVELSNRVLRRFKDVADRFLRVTFMDEGMKKINSHVYTYYVAPIVKEITSSSF 480

Query: 481  PQKTKIFARMKHILKHGFHLCGRKYSFLAYSSNQLRDQSAWFFAECKNISVDGILGWMGK 540
            PQKTK+F RMKHILKHGF+LCGRKYSFLAYSSNQLRDQSAWFF+ECK+++VD IL WMG+
Sbjct: 481  PQKTKVFGRMKHILKHGFYLCGRKYSFLAYSSNQLRDQSAWFFSECKDVTVDSILRWMGR 540

Query: 541  FTNKNVAKCAARIGQCFSSTYATIEVPRNMVNHNLQDVERNGYVFSDGIGTITPDLAQEV 600
            FTNKNVAKCAARIGQCFSSTYATIEVPRNMVNH L DVERN Y+FSDGIGTITPDLAQEV
Sbjct: 541  FTNKNVAKCAARIGQCFSSTYATIEVPRNMVNHQLPDVERNDYIFSDGIGTITPDLAQEV 600

Query: 601  ADKLKMDGSLPCAYQIRYAGYKGVVATWPSKEDGIRLALRPSMNKFESDHRILEICSWTR 660
            ADKLK+ GS PCAYQIRYAG KGVVA+WPSK DGIRLALRPSMNKF+SDHRILEICSWTR
Sbjct: 601  ADKLKLGGSPPCAYQIRYAGCKGVVASWPSKGDGIRLALRPSMNKFQSDHRILEICSWTR 660

Query: 661  FQPGFLNRQIITLLSTLSVPDEIFWSMQETMISKLDRMITDTDVAFEVLTASCAEQGNAA 720
            FQPGFLNRQIITLLSTL+VPDEIFWSMQETM+SKLDRMITDTDVAF+VLTASCAEQGNAA
Sbjct: 661  FQPGFLNRQIITLLSTLNVPDEIFWSMQETMVSKLDRMITDTDVAFDVLTASCAEQGNAA 720

Query: 721  AIMLSAGFEPRTEPHLRGMLMCIRAAQLWGLREKARIFVTEGRWCMGCFDESGVLQEGQC 780
            AIMLSAGFEP+TEPHLRGMLMCIRAAQLWGLREKARIFVT+GRWCMGCFDES VLQ GQC
Sbjct: 721  AIMLSAGFEPQTEPHLRGMLMCIRAAQLWGLREKARIFVTDGRWCMGCFDESAVLQGGQC 780

Query: 781  FIQVSTPLLEKCFSKHGSLFAETKNNLTVVRGTVVIAKNPCLHPGDVRILEAVDAPELHH 840
            FIQVSTPLLE+CFSKHGSLF ETKNNLTV+RGTVVIAKNPCLHPGDVRILEAVDAPELHH
Sbjct: 781  FIQVSTPLLERCFSKHGSLFDETKNNLTVIRGTVVIAKNPCLHPGDVRILEAVDAPELHH 840

Query: 841  LYDCLVFPQNGERPHTNEASGSDLDGDLYFTTWDENLIPPSKKSWPPMEYAPADVKTLQR 900
            LYDCLVFPQNGERPHTNEASGSDLDGDLYF TWDENLIPPS+KSWPPM Y  A+VKTL R
Sbjct: 841  LYDCLVFPQNGERPHTNEASGSDLDGDLYFITWDENLIPPSRKSWPPMNYVAAEVKTLTR 900

Query: 901  KITRLDIMEFFAKNMINESLGTICNAHVVHADRSKYGALDENCIQLSELAATAVDFPKTG 960
            ++TRLDIMEFFAKNMINESLGTICNAHVVHADRS+YGALDENCI+LSELAATAVDFPKTG
Sbjct: 901  EVTRLDIMEFFAKNMINESLGTICNAHVVHADRSEYGALDENCIKLSELAATAVDFPKTG 960

Query: 961  KIVTMPPHLKPKLYPDFMGKEATQSYKSTKILGKMYRRIRDAYDDDDMITSRELNFTPGD 1020
            KIVTMPPHLKPKLYPDFMGK+ATQSYKSTKILG+MYRRIRDAYD+D MIT+ ELNFTPGD
Sbjct: 961  KIVTMPPHLKPKLYPDFMGKQATQSYKSTKILGRMYRRIRDAYDED-MITACELNFTPGD 1020

Query: 1021 VHYDVDLEVAGAEDFIAEAWNQKCSYDGQLSGLLGQYKVNREEEIVTGHIWSMPKYVSRK 1080
            V+YDVDLEVAGA DFIAEAWNQKCSYDGQLSGLLGQYKV+REEEIVTGHIWSMPKY SRK
Sbjct: 1021 VYYDVDLEVAGAADFIAEAWNQKCSYDGQLSGLLGQYKVSREEEIVTGHIWSMPKYSSRK 1080

Query: 1081 QGELKEKLKHSYSTLKKDFRQVFENIGPEFEQLTCDERNAFYEKKASAWYQVAYHPTWLK 1140
            QGELKEKLKHSYSTLKK+FRQVFENIGPEFEQLT DERNA YE+KASAWYQVAYHPTWLK
Sbjct: 1081 QGELKEKLKHSYSTLKKEFRQVFENIGPEFEQLTDDERNALYERKASAWYQVAYHPTWLK 1140

Query: 1141 KSLELREPDAPEAIPMLSFPWIAADYLARIKIKCRRMKSFDPTKPINSLVSYLSERI 1197
            KS+ELREPD  EA PMLSFPWIAADYLARIKIKCR+MKSFDPTKPINSL SYLS+RI
Sbjct: 1141 KSMELREPDISEATPMLSFPWIAADYLARIKIKCRKMKSFDPTKPINSLASYLSDRI 1196

[Close]

BLAST of IVF0016227 vs. NCBI nr
Match: KAG7029509.1 (RNA-dependent RNA polymerase 6, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 2270 bits (5882), Expect = 0.0
Identity = 1092/1197 (91.23%), Postives = 1150/1197 (96.07%), Query Frame = 0


Query: 1    MGSEESEKIVVTQVSFGGFDSDVKARDLMSYLESEIGLVDRCRLKTSWTPPESYPDFEVS 60
            MGSEESEKIVVTQVS GGFDSDVKA+DLMSYLESEIGLVDRCRLKTSWTPPESYPDF++ 
Sbjct: 1    MGSEESEKIVVTQVSIGGFDSDVKAQDLMSYLESEIGLVDRCRLKTSWTPPESYPDFDIV 60

Query: 61   NVANVIKSDDYKKVVPHAFVHFVSPDSAAEALHAAGRGELLFNGKLLKASLGPESPFHIN 120
            NVA+VIKSDDYKKVVPHAFVHF  PDSAA ALHAAGR EL  N +LLK SLGPESP+H+N
Sbjct: 61   NVADVIKSDDYKKVVPHAFVHFALPDSAAGALHAAGRNELFLNDRLLKVSLGPESPYHVN 120

Query: 121  QRRRTKVPFKLSDVQVDIGNLTCHDGFSVAWRGPSSGMDFLVDPFDGTCKFCFTKDTAFS 180
            QRRRTKVPFKLS+V VDIGNLTC DGFSVAWRGPSSGMDFLVDPFDGTCKFCFT+DTAFS
Sbjct: 121  QRRRTKVPFKLSNVLVDIGNLTCQDGFSVAWRGPSSGMDFLVDPFDGTCKFCFTRDTAFS 180

Query: 181  FKDNNKYTVLKCDYKLEFIVRDINQIKRYTDTSCYVILLQLTSSPCIWYRTADDDIAKSV 240
            FKDNNK+TVLKCDYK+EF+VRDINQIKRYTD SCYVILLQLTSSPCIWYRTADDDIAKSV
Sbjct: 181  FKDNNKHTVLKCDYKVEFLVRDINQIKRYTDISCYVILLQLTSSPCIWYRTADDDIAKSV 240

Query: 241  PYDLLDDDDPWIRTTDFTISGAIGRCNTFRVSVPPRYGIKLNNAMNYLKEQRVHQVSLNR 300
            PYDLLDDDDPWIRTTDFTISGAIGRCNT+RVSVPPRYGIKLNNAMNYLKEQRVHQVSL R
Sbjct: 241  PYDLLDDDDPWIRTTDFTISGAIGRCNTYRVSVPPRYGIKLNNAMNYLKEQRVHQVSLKR 300

Query: 301  PPKILNEPDYGVQMTDHFFCIFYKEDISFEILFLVNAVMHKGIINQHQMSDRFFDLLRNQ 360
            PPKILNEPDYGVQMTDHFFCI YKEDI FE+LFLVNAVMHKGIINQHQM+DRFFDLLRNQ
Sbjct: 301  PPKILNEPDYGVQMTDHFFCIHYKEDIPFELLFLVNAVMHKGIINQHQMTDRFFDLLRNQ 360

Query: 361  PNEVNLAALSHIHSYRRPVLDACKKLKLVQEWLLKNPTLWKRSKELVDIVEIRRLVITPS 420
            PNEV+LAAL+HIH+YR PV DACK+LKLVQEWLLKNP LWKRSKELVDI+EIRRLVITPS
Sbjct: 361  PNEVSLAALTHIHTYRHPVPDACKRLKLVQEWLLKNPRLWKRSKELVDIIEIRRLVITPS 420

Query: 421  KAYCFPPEVELSNRVLRRYKDVADRFLRVTFMDEGMKKINSHVYTYYVAPIVKEITSSSF 480
            KAYCFPPEVELSNRVLRR+KDVADRFLRVTFMDEGMKKINSHVYTYYVAPIVKEITSSSF
Sbjct: 421  KAYCFPPEVELSNRVLRRFKDVADRFLRVTFMDEGMKKINSHVYTYYVAPIVKEITSSSF 480

Query: 481  PQKTKIFARMKHILKHGFHLCGRKYSFLAYSSNQLRDQSAWFFAECKNISVDGILGWMGK 540
            PQKTKIF RMKHILKHGF+LCGRKYSFLAYSSNQLRDQSAWFF+ECK+++VD IL WMG+
Sbjct: 481  PQKTKIFGRMKHILKHGFYLCGRKYSFLAYSSNQLRDQSAWFFSECKDVTVDSILRWMGR 540

Query: 541  FTNKNVAKCAARIGQCFSSTYATIEVPRNMVNHNLQDVERNGYVFSDGIGTITPDLAQEV 600
            FTNKNVAKCAARIGQCFSSTYATIEVPRNMVNH L DVERN Y+FSDGIGTITPDLAQEV
Sbjct: 541  FTNKNVAKCAARIGQCFSSTYATIEVPRNMVNHQLPDVERNDYIFSDGIGTITPDLAQEV 600

Query: 601  ADKLKMDGSLPCAYQIRYAGYKGVVATWPSKEDGIRLALRPSMNKFESDHRILEICSWTR 660
            ADKLK+ GS PCAYQIRYAG KGVVA+WPSK DGIRLALRPSMNKF+SDHRILEICSWTR
Sbjct: 601  ADKLKLGGSPPCAYQIRYAGCKGVVASWPSKGDGIRLALRPSMNKFQSDHRILEICSWTR 660

Query: 661  FQPGFLNRQIITLLSTLSVPDEIFWSMQETMISKLDRMITDTDVAFEVLTASCAEQGNAA 720
            FQPGFLNRQIITLLSTL+VPDE FWSMQETM+SKLDRMITDTDVAF+VLTASCAEQGNAA
Sbjct: 661  FQPGFLNRQIITLLSTLNVPDENFWSMQETMVSKLDRMITDTDVAFDVLTASCAEQGNAA 720

Query: 721  AIMLSAGFEPRTEPHLRGMLMCIRAAQLWGLREKARIFVTEGRWCMGCFDESGVLQEGQC 780
            AIMLSAGFEP+TEPHLRGMLMCIRAAQLWGLREKARIFVT+GRWCMGCFDES VLQEGQC
Sbjct: 721  AIMLSAGFEPQTEPHLRGMLMCIRAAQLWGLREKARIFVTDGRWCMGCFDESAVLQEGQC 780

Query: 781  FIQVSTPLLEKCFSKHGSLFAETKNNLTVVRGTVVIAKNPCLHPGDVRILEAVDAPELHH 840
            FIQVSTPLLE+CFSKHGSLF ETKNNLTV+RGTVVIAKNPCLHPGDVRILEAVDAPELHH
Sbjct: 781  FIQVSTPLLERCFSKHGSLFDETKNNLTVIRGTVVIAKNPCLHPGDVRILEAVDAPELHH 840

Query: 841  LYDCLVFPQNGERPHTNEASGSDLDGDLYFTTWDENLIPPSKKSWPPMEYAPADVKTLQR 900
            LYDCLVFPQNGERPHTNEASGSDLDGDLYF TWDENLIPPS+KSWPPM+Y  A+VKTL R
Sbjct: 841  LYDCLVFPQNGERPHTNEASGSDLDGDLYFITWDENLIPPSRKSWPPMDYVAAEVKTLTR 900

Query: 901  KITRLDIMEFFAKNMINESLGTICNAHVVHADRSKYGALDENCIQLSELAATAVDFPKTG 960
            ++TRLDIMEFFAKNMINESLGTICNAHVVHADRS+YGALDENCI+LSELAATAVDFPKTG
Sbjct: 901  EVTRLDIMEFFAKNMINESLGTICNAHVVHADRSEYGALDENCIKLSELAATAVDFPKTG 960

Query: 961  KIVTMPPHLKPKLYPDFMGKEATQSYKSTKILGKMYRRIRDAYDDDDMITSRELNFTPGD 1020
            KIVTMPPHLKPKLYPDFMGK+ATQSYKSTKILG+MYRRIRD YD+D MIT+ ELNFTPGD
Sbjct: 961  KIVTMPPHLKPKLYPDFMGKQATQSYKSTKILGRMYRRIRDVYDED-MITACELNFTPGD 1020

Query: 1021 VHYDVDLEVAGAEDFIAEAWNQKCSYDGQLSGLLGQYKVNREEEIVTGHIWSMPKYVSRK 1080
            V+YDVDLEVAGA DFIAEAWNQKCSYDGQLSGLLGQYKV+REEEIVTGHIWSMPKY SRK
Sbjct: 1021 VYYDVDLEVAGAADFIAEAWNQKCSYDGQLSGLLGQYKVSREEEIVTGHIWSMPKYSSRK 1080

Query: 1081 QGELKEKLKHSYSTLKKDFRQVFENIGPEFEQLTCDERNAFYEKKASAWYQVAYHPTWLK 1140
            QGELKEKLKHSYSTLKK+FRQVFENIGPEF+QLT DERNA YE+KASAWYQVAYHPTWLK
Sbjct: 1081 QGELKEKLKHSYSTLKKEFRQVFENIGPEFDQLTDDERNALYERKASAWYQVAYHPTWLK 1140

Query: 1141 KSLELREPDAPEAIPMLSFPWIAADYLARIKIKCRRMKSFDPTKPINSLVSYLSERI 1197
            KS+ELREPD  EA PMLSFPWIAADYLARIKIKCR+MKSFDPTKPINSL SYLS+R+
Sbjct: 1141 KSMELREPDISEATPMLSFPWIAADYLARIKIKCRKMKSFDPTKPINSLASYLSDRM 1196

[Close]

BLAST of IVF0016227 vs. TAIR 10
Match: AT3G49500.1 (RNA-dependent RNA polymerase 6 )

HSP 1 Score: 1671.8 bits (4328), Expect = 0.0e+00
Identity = 795/1199 (66.31%), Postives = 960/1199 (80.07%), Query Frame = 0


Query: 1    MGSE-ESEKIVVTQVSFGGFDSDVKARDLMSYLESEIGLVDRCRLKTSWTPPESYPDFEV 60
            MGSE   +K VVTQVS GGF     A+ L  YLE E+G+V RCRLKTSWTPP SYP+FE+
Sbjct: 1    MGSEGNMKKSVVTQVSIGGFGESTTAKQLTDYLEDEVGIVWRCRLKTSWTPPGSYPNFEI 60

Query: 61   SNVANVIKSDDYKKVVPHAFVHFVSPDSAAEALHAAGRGELLFNGKLLKASLGPESPFHI 120
            ++ +N+   D+YKKV PHAFVHF   +SA  A+ AAG+  L+ +G+ LK SLGP++P+ +
Sbjct: 61   ADTSNIPSIDEYKKVEPHAFVHFAVFESAGRAMDAAGQCNLILDGQPLKVSLGPKNPYSL 120

Query: 121  NQRRRTKVPFKLSDVQVDIGNLTCHDGFSVAWRGPSSGMDFLVDPFDGTCKFCFTKDTAF 180
            NQRRRT VP+KL+ + ++IG L   D F V+WR  + G+DFLVDPFD TCKFCF K TAF
Sbjct: 121  NQRRRTTVPYKLAGITLEIGTLVSRDDFFVSWR--AEGVDFLVDPFDNTCKFCFRKSTAF 180

Query: 181  SFKDNNKYTVLKCDYKLEFIVRDINQIKRYTDTSCYVILLQLTSSPCIWYRTADDDIAKS 240
            SFKD   + V+ CDYKLE +VRDI  +++Y     +V++LQL SSP +WYRTADDDI  +
Sbjct: 181  SFKDAVMHAVINCDYKLELLVRDIQTVRQYKTLHGFVLILQLASSPRVWYRTADDDIYDT 240

Query: 241  VPYDLLDDDDPWIRTTDFTISGAIGRCNTFRVSVPPRYGIKLNNAMNYLKEQRVHQVSLN 300
            VP DLLDDDDPWIRTTDFT  GAIGRC+++RV + PRY  KL  A++Y + +RV +  + 
Sbjct: 241  VPGDLLDDDDPWIRTTDFTQVGAIGRCHSYRVLISPRYENKLRTALDYFRMRRVQEERVR 300

Query: 301  RPPKILNEPDYGVQMTDHFFCIFYKEDISFEILFLVNAVMHKGIINQHQMSDRFFDLLRN 360
             PP+I NEP +G  ++DHFFCI +KE ISFEI+FLVN+V+H+G+ NQ Q+++RFFDLLRN
Sbjct: 301  WPPRIRNEPCFGEPVSDHFFCIHHKEGISFEIMFLVNSVLHRGVFNQFQLTERFFDLLRN 360

Query: 361  QPNEVNLAALSHIHSYRRPVLDACKKLKLVQEWLLKNPTLWKRSKELVDIVEIRRLVITP 420
            QP +VN+A+L H+ +Y+RPV DA K+LKLVQEW+ KNP L    ++  DI EIRRLVITP
Sbjct: 361  QPKDVNIASLKHLCTYKRPVFDAYKRLKLVQEWIQKNPKLLGSHEQSEDISEIRRLVITP 420

Query: 421  SKAYCFPPEVELSNRVLRRYKDVADRFLRVTFMDEGMKKINSHVYTYYVAPIVKEITSSS 480
            ++AYC PPEVELSNRVLRRYK VA+RFLRVTFMDE M+ INS+V +Y+VAPIVK++TSSS
Sbjct: 421  TRAYCLPPEVELSNRVLRRYKAVAERFLRVTFMDESMQTINSNVLSYFVAPIVKDLTSSS 480

Query: 481  FPQKTKIFARMKHILKHGFHLCGRKYSFLAYSSNQLRDQSAWFFAECKNISVDGILGWMG 540
            F QKT +F R+K IL  GF LCGRKYSFLA+S+NQLRD+SAWFFAE     V  I  WMG
Sbjct: 481  FSQKTYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDRSAWFFAEDGKTRVSDIKTWMG 540

Query: 541  KFTNKNVAKCAARIGQCFSSTYATIEVPRNMVNHNLQDVERNGYVFSDGIGTITPDLAQE 600
            KF +KNVAKCAAR+G CFSSTYAT++V  + V+  + D+ERNGYVFSDGIGTITPDLA E
Sbjct: 541  KFKDKNVAKCAARMGLCFSSTYATVDVMPHEVDTEVPDIERNGYVFSDGIGTITPDLADE 600

Query: 601  VADKLKMDGSL-PCAYQIRYAGYKGVVATWPSKEDGIRLALRPSMNKFESDHRILEICSW 660
            V +KLK+D    PCAYQIRYAG+KGVVA WPSK DGIRLALR SM KF S H ILEICSW
Sbjct: 601  VMEKLKLDVHYSPCAYQIRYAGFKGVVARWPSKSDGIRLALRDSMKKFFSKHTILEICSW 660

Query: 661  TRFQPGFLNRQIITLLSTLSVPDEIFWSMQETMISKLDRMITDTDVAFEVLTASCAEQGN 720
            TRFQPGFLNRQIITLLS L VPDEIFW MQE+M+ KL+R++ DTDVAFEVLTASCAEQGN
Sbjct: 661  TRFQPGFLNRQIITLLSVLGVPDEIFWDMQESMLYKLNRILDDTDVAFEVLTASCAEQGN 720

Query: 721  AAAIMLSAGFEPRTEPHLRGMLMCIRAAQLWGLREKARIFVTEGRWCMGCFDESGVLQEG 780
             AAIMLSAGF+P+TEPHLRGML  +R AQLWGLREK+RIFVT GRW MGC DE+G+L+ G
Sbjct: 721  TAAIMLSAGFKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVTSGRWLMGCLDEAGILEHG 780

Query: 781  QCFIQVSTPLLEKCFSKHGSLFAETKNNLTVVRGTVVIAKNPCLHPGDVRILEAVDAPEL 840
            QCFIQVS P +E CFSKHGS F ETK +L VV+G V IAKNPCLHPGDVRILEAVD P+L
Sbjct: 781  QCFIQVSKPSIENCFSKHGSRFKETKTDLEVVKGYVAIAKNPCLHPGDVRILEAVDVPQL 840

Query: 841  HHLYDCLVFPQNGERPHTNEASGSDLDGDLYFTTWDENLIPPSKKSWPPMEYAPADVKTL 900
            HH+YDCL+FPQ G+RPHTNEASGSDLDGDLYF  WD+ LIPP++KS+P M Y  A+ K+L
Sbjct: 841  HHMYDCLIFPQKGDRPHTNEASGSDLDGDLYFVAWDQKLIPPNRKSYPAMHYDAAEEKSL 900

Query: 901  QRKITRLDIMEFFAKNMINESLGTICNAHVVHADRSKYGALDENCIQLSELAATAVDFPK 960
             R +   DI++FFA+N+ NE LGTICNAHVVHADRS+YGA+DE C+ L+ELAATAVDFPK
Sbjct: 901  GRAVNHQDIIDFFARNLANEQLGTICNAHVVHADRSEYGAMDEECLLLAELAATAVDFPK 960

Query: 961  TGKIVTMPPHLKPKLYPDFMGKEATQSYKSTKILGKMYRRIRDAYDDDDMITSRELNFTP 1020
            TGKIV+MP HLKPKLYPDFMGKE  Q+YKS KILG++YRR+++ YD+D   +S E +  P
Sbjct: 961  TGKIVSMPFHLKPKLYPDFMGKEDYQTYKSNKILGRLYRRVKEVYDEDAEASSEE-STDP 1020

Query: 1021 GDVHYDVDLEVAGAEDFIAEAWNQKCSYDGQLSGLLGQYKVNREEEIVTGHIWSMPKYVS 1080
              + YD  LE+ G ED I EAW  KC YDGQL GLLGQYKV +EEEIVTGHIWSMPKY S
Sbjct: 1021 SAIPYDAVLEIPGFEDLIPEAWGHKCLYDGQLIGLLGQYKVQKEEEIVTGHIWSMPKYTS 1080

Query: 1081 RKQGELKEKLKHSYSTLKKDFRQVFENIGPEFEQLTCDERNAFYEKKASAWYQVAYHPTW 1140
            +KQGELKE+LKHSY++LKK+FR+VFE   P+ E L+ +E+N  YEKKASAWY V YHP W
Sbjct: 1081 KKQGELKERLKHSYNSLKKEFRKVFEETIPDHENLSEEEKNILYEKKASAWYHVTYHPEW 1140

Query: 1141 LKKSLELREPDAPEAIPMLSFPWIAADYLARIKIKCRRMKSFDPTKPINSLVSYLSERI 1198
            +KKSLEL++PD      MLSF WIAADYLARIKI+ R M S D  KP++SL  +L++R+
Sbjct: 1141 VKKSLELQDPDESSHAAMLSFAWIAADYLARIKIRSREMGSIDSAKPVDSLAKFLAQRL 1196

[Close]

BLAST of IVF0016227 vs. TAIR 10
Match: AT1G14790.1 (RNA-dependent RNA polymerase 1 )

HSP 1 Score: 578.2 bits (1489), Expect = 1.6e-164
Identity = 359/1011 (35.51%), Postives = 540/1011 (53.41%), Query Frame = 0


Query: 193  DYKLEFIVRDINQIKRYT--DTSCYVILLQLTSSPCIWYRTADDDIAKSVPYDLLD---- 252
            DY+LE    +I QI  ++    S   +++Q+  +P I+ +   +D   ++ + ++D    
Sbjct: 143  DYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAPKIFEK---EDQPINLLFGIMDFYSD 202

Query: 253  -DDDPWIRTTDFTISGAIGRCNTFRVSVPPRYGIK--LNNAMNYLKEQRVHQVSLNRPPK 312
              D+ WIRTTDFT S  IG+   F + +P    +     N  NY  E R     +     
Sbjct: 203  GSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRENFANY-AEHRASSFLIESGSS 262

Query: 313  ILNEPDYGVQMTDHFFCIFYKEDISFEILFLVNAVMHKGIINQHQMSDRFFDLLRNQPNE 372
              +  +  V + D          + FEILF +N ++    ++   +   F+ LL  +   
Sbjct: 263  YSSNANTLVPVVDPPPGF----SLPFEILFKLNTLVQNACLSGPALDLDFYRLLNQK--- 322

Query: 373  VNLAALSHIHSYRRPVLDAC-KKLKLVQE-------WLLKNPTLWKRSKELV-------- 432
                       Y R ++D C +KL  + E       WL      W    +L         
Sbjct: 323  ----------KYDRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLSPTISLD 382

Query: 433  -DIVEIRRLVITPSKAYCFPPEVELSNRVLRRYKDVADRFLRVTFMDEGMKKINSHVYTY 492
              +V + R+ +TP++ Y   PEV +SNRVLR Y    + FLRV+F+DE ++K+ S     
Sbjct: 383  DGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKVRS----- 442

Query: 493  YVAPIVKEITSSSFPQKTKIFARMKHILKHGFHLCGRKYSFLAYSSNQLRDQSAWFFAEC 552
                 +     SS  ++TK++ R+  +L+ G  +  +K+ FLA+SS+QLR+ SAW FA  
Sbjct: 443  -----MDLSPRSSTQRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPI 502

Query: 553  KNISVDGILGWMGKFTN-KNVAKCAARIGQCFSSTYATIEVPRNMVNHNLQDVE----RN 612
              I+   I  WMG F + +NVAK AAR+GQ FSS+  T+ V  + +   + DVE      
Sbjct: 503  DRITAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEI-EVIPDVEIISLGT 562

Query: 613  GYVFSDGIGTITPDLAQEVADKLKMDGSLPCAYQIRYAGYKGVVATWPSKEDGIRLALRP 672
             YVFSDGIG I+ + A++VA K  +    P A+QIRY GYKGVVA  P+     +L+LR 
Sbjct: 563  RYVFSDGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSK--KLSLRK 622

Query: 673  SMNKFESDHRILEICSWTRFQPGFLNRQIITLLSTLSVPDEIFWSMQETMISKLDRMITD 732
            SM+KFES++  L++ +W+++QP ++NRQ+ITLLSTL V D +F   Q  ++ +LD ++T 
Sbjct: 623  SMSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTH 682

Query: 733  TDVAFEVL-TASCAEQGNAAAIMLSAGFEPRTEPHLRGMLMCIRAAQLWGLREKARIFVT 792
               A E L   +  E  N    ++  G++P  EP L  ML   RA++L  LR K RIF++
Sbjct: 683  PLEAHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFIS 742

Query: 793  EGRWCMGCFDESGVLQEGQCFIQVSTPLLEKCFSKHGSLFAETKNNLTVVRGTVVIAKNP 852
             GR  MGC DE+  L+ GQ  +Q S P+      + G  F        ++ G VV+AKNP
Sbjct: 743  GGRSMMGCLDETRTLEYGQVVVQYSDPM------RPGRRF--------IITGPVVVAKNP 802

Query: 853  CLHPGDVRILEAVDAPELHHLYDCLVFPQNGERPHTNEASGSDLDGDLYFTTWDENLIPP 912
            CLHPGDVR+L+AV+ P L+H+ DC+VFPQ G RPH NE SGSDLDGD+YF  WD+ L+PP
Sbjct: 803  CLHPGDVRVLQAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELVPP 862

Query: 913  SKKSWPPMEYAPADVKTLQRKITRLDIMEFFAKNMINESLGTICNAHVVHADRSKYGALD 972
              ++  PM+Y P   + L   +T  ++ E+FA  ++N+SLG I NAH   AD+    A  
Sbjct: 863  --RTSEPMDYTPEPTQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFS 922

Query: 973  ENCIQLSELAATAVDFPKTGKIVTMPPHLKPKLYPDFMGKEATQSYKSTKILGKMYRRIR 1032
            + CI+L++  +TAVDFPKTG    +P HL  K YPDFM K    +Y+S  ++GK++R ++
Sbjct: 923  DPCIELAKKFSTAVDFPKTGVAAVIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVK 982

Query: 1033 DAYDDDDMITSRELNFTPGDVHYDVDLEVAGAEDFIAEAWNQKCSYDGQLSGLLGQYKVN 1092
            +      +I+ +          YD D+EV G E+++ EA+ QK +YD +L  L+  Y + 
Sbjct: 983  ER--APPLISIKSFTLDVASKSYDKDMEVDGFEEYVDEAFYQKANYDFKLGNLMDYYGIK 1042

Query: 1093 REEEIVTGHIWSMPKYVSRKQGELKEKLKHSYSTLKKDFRQVFENIGPEFEQLTCDERNA 1152
             E EI++G I  M K  ++++    E +  +   L+K+   +F             E   
Sbjct: 1043 TEAEILSGGIMRMSKSFTKRRD--AESIGRAVRALRKETLSLF----------NASEEEE 1084

Query: 1153 FYEKKASAWYQVAYHPTWLKKSLELREPDAPEAIPMLSFPWIAADYLARIK 1172
                KASAWY V YH ++     E    D       LSF W   D L RIK
Sbjct: 1103 NESAKASAWYHVTYHSSYWGLYNEGLNRD-----HFLSFAWCVYDKLVRIK 1084

[Close]

BLAST of IVF0016227 vs. TAIR 10
Match: AT4G11130.1 (RNA-dependent RNA polymerase 2 )

HSP 1 Score: 521.2 bits (1341), Expect = 2.3e-147
Identity = 338/964 (35.06%), Postives = 509/964 (52.80%), Query Frame = 0


Query: 246  DDDDPWIRTTDFTISGAIGRCNTFRVSVPPRYGIKLNNAMNYLKEQRVHQVSLNRPPKIL 305
            D D  WIRTTDF+ S +IG    F + V    G  + +  + L   R   +SL      +
Sbjct: 214  DFDFMWIRTTDFSGSKSIGTSTCFCLEV--HNGSTMLDIFSGLPYYREDTLSLT----YV 273

Query: 306  NEPDY--GVQMTDHFFCIFYKEDISFEILFLVNAVMHKGIINQHQMSD-RFFDLLRNQPN 365
            +   +    Q+           +  +EILF +NA++H   I+    SD     +LR    
Sbjct: 274  DGKTFASAAQIVPLLNAAILGLEFPYEILFQLNALVHAQKISLFAASDMELIKILRGMSL 333

Query: 366  EVNLAALSHIHSYRR----PVLDACKKLKLVQEWLLKNP-TLWKRSKELVDIVEIRRLVI 425
            E  L  L  +H        PV     +++ V + +  +P + +KR  E  +I+  +R  +
Sbjct: 334  ETALVILKKLHQQSSICYDPVFFVKTQMQSVVKKMKHSPASAYKRLTE-QNIMSCQRAYV 393

Query: 426  TPSKAYCFPPEVELSNRVLRRYKDVADRFLRVTFMDEGMKKINSHVYT------YYVAPI 485
            TPSK Y   PE+E +N V++ + +    F+RVTF++E   K+ ++  +      Y+V   
Sbjct: 394  TPSKIYLLGPELETANYVVKNFAEHVSDFMRVTFVEEDWSKLPANALSVNSKEGYFVK-- 453

Query: 486  VKEITSSSFPQKTKIFARMKHILKHGFHLCGRKYSFLAYSSNQLRDQSAWFFAECKNISV 545
                     P +T I+ R+  IL  G  +  +++ FLA+S++QLR  S W FA  + +  
Sbjct: 454  ---------PSRTNIYNRVLSILGEGITVGPKRFEFLAFSASQLRGNSVWMFASNEKVKA 513

Query: 546  DGILGWMGKFTN-KNVAKCAARIGQCFSSTYATIEVPRNMVNHNLQDVERN----GYVFS 605
            + I  WMG F   ++++KCAAR+GQ FS++  T+ V    V   + D+E       Y FS
Sbjct: 514  EDIREWMGCFRKIRSISKCAARMGQLFSASRQTLIVRAQDV-EQIPDIEVTTDGADYCFS 573

Query: 606  DGIGTITPDLAQEVADKLKMDGSLPCAYQIRYAGYKGVVATWPSKEDGIRLALRPSMNKF 665
            DGIG I+   A++VA K  +   +P A+QIRY GYKGV+A    +    +L+LR SM KF
Sbjct: 574  DGIGKISLAFAKQVAQKCGL-SHVPSAFQIRYGGYKGVIAV--DRSSFRKLSLRDSMLKF 633

Query: 666  ESDHRILEICSWTRFQPGFLNRQIITLLSTLSVPDEIFWSMQETMISKLDRMITDTDVAF 725
            +S++R+L +  WT   P FLNR+II LLSTL + D +F +MQ   +S L  M+ D D A 
Sbjct: 634  DSNNRMLNVTRWTESMPCFLNREIICLLSTLGIEDAMFEAMQAVHLSMLGNMLEDRDAAL 693

Query: 726  EVLTASCAEQG-NAAAIMLSAGFEPRTEPHLRGMLMCIRAAQLWGLREKARIFVTEGRWC 785
             VL     E   N    ML  G+ P +EP+L  ML     +QL  L+ + RI V +GR  
Sbjct: 694  NVLQKLSGENSKNLLVKMLLQGYAPSSEPYLSMMLRVHHESQLSELKSRCRILVPKGRIL 753

Query: 786  MGCFDESGVLQEGQCFIQVSTPLLEKCFSKHGSLFAETKNNLTVVRGTVVIAKNPCLHPG 845
            +GC DE G+L+ GQ +++V+    E   S+  S F +     +VV G VV+ KNPCLHPG
Sbjct: 754  IGCMDEMGILEYGQVYVRVTLTKAE-LKSRDQSYFRKIDEETSVVIGKVVVTKNPCLHPG 813

Query: 846  DVRILEAVDAPELHH----LYDCLVFPQNGERPHTNEASGSDLDGDLYFTTWDENLIPPS 905
            D+R+L+A+   E+H       DC++FPQ GERPH NE SG DLDGD +F +WDE +IP  
Sbjct: 814  DIRVLDAI--YEVHFEEKGYLDCIIFPQKGERPHPNECSGGDLDGDQFFVSWDEKIIPSE 873

Query: 906  KKSWPPMEYAPADVKTLQRKITRLDIMEFFAKNMINESLGTICNAHVVHADRSKYGALDE 965
                PPM+YA +  + +   +T  +I +FF   MI+++LG I  AH+VHADR    A  +
Sbjct: 874  MD--PPMDYAGSRPRLMDHDVTLEEIHKFFVDYMISDTLGVISTAHLVHADRDPEKARSQ 933

Query: 966  NCIQLSELAATAVDFPKTGKIVTMPPHLKPKLYPDFMGKEATQSYKSTKILGKMYRRIRD 1025
             C++L+ L + AVDF KTG    MP  LKP+ +PDF+ +    +Y S  + GK+YR ++ 
Sbjct: 934  KCLELANLHSRAVDFAKTGAPAEMPYALKPREFPDFLERFEKPTYISESVFGKLYRAVKS 993

Query: 1026 AYDDDDMITSRELNFTPGD-VHYDVDLEVAGAEDFIAEAWNQKCSYDGQLSGLLGQYKVN 1085
            +      +  R+      D V YDV LE AG E FI  A   +  Y  +L+ L+  Y   
Sbjct: 994  S------LAQRKPEAESEDTVAYDVTLEEAGFESFIETAKAHRDMYGEKLTSLMIYYGAA 1053

Query: 1086 REEEIVTGHIWSMPKYV---SRKQGELKEKLKHSYSTLKKDFRQVFENIGPEFEQLTCDE 1145
             EEEI+TG + +   Y+   +R+ G++K+++  S   L K+    FE         +C++
Sbjct: 1054 NEEEILTGILKTKEMYLARDNRRYGDMKDRITLSVKDLHKEAMGWFEK--------SCED 1113

Query: 1146 RNAFYEKKASAWYQVAYHPTWLKKSLELREPDAPEAIPMLSFPWIAADYLARIKIKCRRM 1182
                 +K ASAWY V Y+P               E +  LSFPWI  D L  IK +  + 
Sbjct: 1114 EQQ-KKKLASAWYYVTYNPN-----------HRDEKLTFLSFPWIVGDVLLDIKAENAQR 1124

[Close]

BLAST of IVF0016227 vs. TAIR 10
Match: AT2G05370.1 (BEST Arabidopsis thaliana protein match is: RNA-dependent RNA polymerase 6 (TAIR:AT3G49500.1); Has 65 Blast hits to 37 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 169.9 bits (429), Expect = 1.3e-41
Identity = 104/289 (35.99%), Postives = 142/289 (49.13%), Query Frame = 0


Query: 7   EKIVVTQVSFGGFDSDVKARDLMSYLESEIG-LVDRCRLKTSWTPPESYPDFEVSNVANV 66
           + +VV+QV+  GF    K ++L  YLE+++G LV RCRLKTSWTP  SYP+FE+ + +N+
Sbjct: 2   KNLVVSQVTISGFGESTKTKELTDYLENKVGLLVWRCRLKTSWTPHGSYPNFEIIDTSNI 61

Query: 67  IKSDDYKKVVPHAFVHFVSPDSAAEALHAAGRGELLFNGKLLKASLGPESPFHINQRRRT 126
            K D Y++VVPHAFVH    D+    + AA + +L+  G+ LK SL  E+P+ +N     
Sbjct: 62  PKFDCYERVVPHAFVHC---DAHKSLMDAAEQSKLILGGQPLKFSLSSENPYTLN----- 121

Query: 127 KVPFKLSDVQVDIGNLTCHDGFSVAWRGPSSGMDFLVDPFDGTCKFCFTKDTAFSFKDNN 186
             P+KL+ V ++IG                                              
Sbjct: 122 --PYKLTGVSLEIGT--------------------------------------------- 181

Query: 187 KYTVLKCDYKLEFIVRDINQIKRYTDTSCYVILLQLTSSPCIWYRTADDDIAKSVPYDLL 246
                                              L SSP +WYRTADDDI ++   DLL
Sbjct: 182 -----------------------------------LASSPRVWYRTADDDIYETSAVDLL 200

Query: 247 DDDDPWIRTTDFTISGAIGRCNTFRVSVPPRYGIKLNNAMNYLKEQRVH 295
           DD+DPWIRTTDFT SGAI RC  +RV + PR   K    ++YLK QRV+
Sbjct: 242 DDNDPWIRTTDFTQSGAIRRCLGYRVFISPRDHNKWTKVLDYLKTQRVN 200

[Close]

BLAST of IVF0016227 vs. TAIR 10
Match: AT2G05370.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: RNA-dependent RNA polymerase 6 (TAIR:AT3G49500.1); Has 31 Blast hits to 31 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 117.9 bits (294), Expect = 5.8e-26
Identity = 65/149 (43.62%), Postives = 96/149 (64.43%), Query Frame = 0


Query: 1   MGSEESEK-IVVTQVSFGGFDSDVKARDLMSYLESEIG-LVDRCRLKTSWTPPESYPDFE 60
           M SE + K +VV+QV+  GF    K ++L  YLE+++G LV RCRLKTSWTP  SYP+FE
Sbjct: 1   MESEGNMKNLVVSQVTISGFGESTKTKELTDYLENKVGLLVWRCRLKTSWTPHGSYPNFE 60

Query: 61  VSNVANVIKSDDYKKVVPHAFVHFVSPDSAAEALHAAGRGELLFNGKLLKASLGPESPFH 120
           + + +N+ K D Y++VVPHAFVH    D+    + AA + +L+  G+ LK SL  E+P+ 
Sbjct: 61  IIDTSNIPKFDCYERVVPHAFVHC---DAHKSLMDAAEQSKLILGGQPLKFSLSSENPYT 120

Query: 121 INQRRRTKVPFKLSDVQVDIGNLTCHDGF 148
           +N       P+KL+ V ++IG ++  D F
Sbjct: 121 LN-------PYKLTGVSLEIGTVSQDDFF 139

The following BLAST results are available for this feature:

BLAST of IVF0016227 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SG02	0.0e+00	66.31	RNA-dependent RNA polymerase 6 OS=Arabidopsis thaliana OX=3702 GN=RDR6 PE=1 SV=1	[more]
Q8LHH9	0.0e+00	57.33	Probable RNA-dependent RNA polymerase SHL2 OS=Oryza sativa subsp. japonica OX=39...	[more]
Q9LQV2	2.2e-163	35.51	RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=RDR1 PE=2 SV=1	[more]
Q7XM31	2.3e-160	35.95	Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa subsp. japonica OX=39947...	[more]
Q0DXS3	7.1e-154	40.39	Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp. japonica OX=39947...	[more]

BLAST of IVF0016227 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4DVP7	0.0e+00	100.00	RNA-dependent RNA polymerase OS=Cucumis melo OX=3656 GN=LOC103488305 PE=3 SV=1	[more]
A0A5A7VD22	0.0e+00	100.00	RNA-dependent RNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
E9NWL0	0.0e+00	97.08	RNA-dependent RNA polymerase OS=Cucumis sativus OX=3659 GN=Csa_2G381730 PE=2 SV=...	[more]
A0A6J1HBE9	0.0e+00	91.31	RNA-dependent RNA polymerase OS=Cucurbita moschata OX=3662 GN=LOC111462552 PE=3 ...	[more]
A0A6J1K8Y0	0.0e+00	90.64	RNA-dependent RNA polymerase OS=Cucurbita maxima OX=3661 GN=LOC111491746 PE=3 SV...	[more]

BLAST of IVF0016227 vs. NCBI nr


Match Name	Identity	Description
XP_008445204.1	100.00	PREDICTED: RNA-dependent RNA polymerase 6 [Cucumis melo] >XP_016900057.1 PREDICT...	[more]
NP_001267634.1	97.08	RNA-dependent RNA polymerase 6-like [Cucumis sativus] >XP_011648568.1 RNA-depend...	[more]
XP_038885332.1	92.82	RNA-dependent RNA polymerase 6 [Benincasa hispida] >XP_038885333.1 RNA-dependent...	[more]
XP_022961927.1	91.31	RNA-dependent RNA polymerase 6 [Cucurbita moschata]	[more]
KAG7029509.1	91.23	RNA-dependent RNA polymerase 6, partial [Cucurbita argyrosperma subsp. argyrospe...	[more]

BLAST of IVF0016227 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G49500.1	0.0e+00	66.31	RNA-dependent RNA polymerase 6	[more]
AT1G14790.1	1.6e-164	35.51	RNA-dependent RNA polymerase 1	[more]
AT4G11130.1	2.3e-147	35.06	RNA-dependent RNA polymerase 2	[more]
AT2G05370.1	1.3e-41	35.99	BEST Arabidopsis thaliana protein match is: RNA-dependent RNA polymerase 6 (TAIR...	[more]
AT2G05370.2	5.8e-26	43.62	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007855	RNA-dependent RNA polymerase, eukaryotic-type	PFAM	PF05183	RdRP	coord: 417..999 e-value: 6.0E-183 score: 609.6
IPR007855	RNA-dependent RNA polymerase, eukaryotic-type	PANTHER	PTHR23079	RNA-DEPENDENT RNA POLYMERASE	coord: 7..1197
None	No IPR available	PANTHER	PTHR23079:SF18	RNA-DEPENDENT RNA POLYMERASE 6	coord: 7..1197
None	No IPR available	CDD	cd00590	RRM_SF	coord: 14..110 e-value: 6.72832E-4 score: 37.2845
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 12..114 score: 8.637593

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0016227.4	IVF0016227.4	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010492	maintenance of shoot apical meristem identity
biological_process	GO:0070919	production of siRNA involved in gene silencing by small RNA
biological_process	GO:0030422	production of siRNA involved in RNA interference
biological_process	GO:0001172	transcription, RNA-templated
cellular_component	GO:0031380	nuclear RNA-directed RNA polymerase complex
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003968	RNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0003676	nucleic acid binding