IVF0016216 (gene) Melon (IVF77) v1

Overview
NameIVF0016216
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionKeratin, type I cytoskeletal 10-like
Locationchr05: 9452850 .. 9453251 (-)
RNA-Seq ExpressionIVF0016216
SyntenyIVF0016216
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAACATACAAGGAACAGACAGTGCGGCTCCGAGGAAAGGACAACAACACCAATGGACAACTCCTACTTACTCATGTCGAGTGGAAAGCAAGACAAAAACTGAATAATGGTGACAACTTTTCGGTGAACAATGGGCACAGATCCTATGGTAGCGATCACGAAAGATGGCAAGGACAAAGACGAGGTCGTAGTCATGGTCGTGGCGTAGAGCATCAAAACAGTATGGGAGGCACTAGAAACACTAGAAAAGGCACTCGTGATAAAAGTCACATAAAGTGCTTCACTTGCAACAAGATGGGACATTACACGTCGAAGTGTCATGGAAAAATTCATGACGACGAAGCTCATCTAACTTGCACCGTCGAAGAAGAACGAACTTTGATGATGGTCGTCTTCTAG

mRNA sequence

ATGAAAACATACAAGGAACAGACAGTGCGGCTCCGAGGAAAGGACAACAACACCAATGGACAACTCCTACTTACTCATGTCGAGTGGAAAGCAAGACAAAAACTGAATAATGGTGACAACTTTTCGGTGAACAATGGGCACAGATCCTATGGTAGCGATCACGAAAGATGGCAAGGACAAAGACGAGGTCGTAGTCATGGTCGTGGCGTAGAGCATCAAAACAGTATGGGAGGCACTAGAAACACTAGAAAAGGCACTCGTGATAAAAGTCACATAAAGTGCTTCACTTGCAACAAGATGGGACATTACACGTCGAAGTGTCATGGAAAAATTCATGACGACGAAGCTCATCTAACTTGCACCGTCGAAGAAGAACGAACTTTGATGATGGTCGTCTTCTAG

Coding sequence (CDS)

ATGAAAACATACAAGGAACAGACAGTGCGGCTCCGAGGAAAGGACAACAACACCAATGGACAACTCCTACTTACTCATGTCGAGTGGAAAGCAAGACAAAAACTGAATAATGGTGACAACTTTTCGGTGAACAATGGGCACAGATCCTATGGTAGCGATCACGAAAGATGGCAAGGACAAAGACGAGGTCGTAGTCATGGTCGTGGCGTAGAGCATCAAAACAGTATGGGAGGCACTAGAAACACTAGAAAAGGCACTCGTGATAAAAGTCACATAAAGTGCTTCACTTGCAACAAGATGGGACATTACACGTCGAAGTGTCATGGAAAAATTCATGACGACGAAGCTCATCTAACTTGCACCGTCGAAGAAGAACGAACTTTGATGATGGTCGTCTTCTAG

Protein sequence

MKTYKEQTVRLRGKDNNTNGQLLLTHVEWKARQKLNNGDNFSVNNGHRSYGSDHERWQGQRRGRSHGRGVEHQNSMGGTRNTRKGTRDKSHIKCFTCNKMGHYTSKCHGKIHDDEAHLTCTVEEERTLMMVVF
Homology
BLAST of IVF0016216 vs. ExPASy TrEMBL
Match: A0A5A7TDE3 (Keratin, type I cytoskeletal 10-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold767G00400 PE=4 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 2.5e-71
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0

Query: 1   MKTYKEQTVRLRGKDNNTNGQLLLTHVEWKARQKLNNGDNFSVNNGHRSYGSDHERWQGQ 60
           MKTYKEQTVRLRGKDNNTNGQLLLTHVEWKARQKLNNGDNFSVNNGHRSYGSDHERWQGQ
Sbjct: 1   MKTYKEQTVRLRGKDNNTNGQLLLTHVEWKARQKLNNGDNFSVNNGHRSYGSDHERWQGQ 60

Query: 61  RRGRSHGRGVEHQNSMGGTRNTRKGTRDKSHIKCFTCNKMGHYTSKCHGKIHDDEAHLTC 120
           RRGRSHGRGVEHQNSMGGTRNTRKGTRDKSHIKCFTCNKMGHYTSKCHGKIHDDEAHLTC
Sbjct: 61  RRGRSHGRGVEHQNSMGGTRNTRKGTRDKSHIKCFTCNKMGHYTSKCHGKIHDDEAHLTC 120

Query: 121 TVEEERTLMMVVF 134
           TVEEERTLMMVVF
Sbjct: 121 TVEEERTLMMVVF 133

BLAST of IVF0016216 vs. ExPASy TrEMBL
Match: A0A5D3B747 (Keratin, type I cytoskeletal 9-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold104G001040 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 3.6e-25
Identity = 58/84 (69.05%), Postives = 69/84 (82.14%), Query Frame = 0

Query: 49  SYGSDHERWQGQRRGRSHGRGVEHQNSMGGTRNTRKGTRDKSHIKCFTCNKMGHYTSKCH 108
           S G+D  +WQG+RRGR HGRG+EHQNS+GG  NT  GTRDKSHIKCFTC+K+GHY  + H
Sbjct: 7   SSGNDRGKWQGRRRGRGHGRGMEHQNSVGGPCNTENGTRDKSHIKCFTCSKIGHYAFESH 66

Query: 109 GKIHDDEAHLTCTVEEERTLMMVV 133
           GK  DDEAHLTCTV+EE +LMM +
Sbjct: 67  GKGRDDEAHLTCTVDEEPSLMMAM 90

BLAST of IVF0016216 vs. ExPASy TrEMBL
Match: A0A5A7SIJ0 (Keratin, type I cytoskeletal 9-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68G00200 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 8.2e-14
Identity = 49/84 (58.33%), Postives = 55/84 (65.48%), Query Frame = 0

Query: 49  SYGSDHERWQGQRRGRSHG--RGVEHQNSMGGTRNTRKGTRDKSHIKCFTCNKMGHYTSK 108
           S   D  RW G   G SHG  RG + QN  GGT NT  GTRDKSHIKCFTCNKM HYT++
Sbjct: 7   SSSRDCRRWLG--CGCSHGCDRGTKPQNCAGGTSNTDNGTRDKSHIKCFTCNKMKHYTTE 66

Query: 109 CHGKIHDDEAHLTCTVEEERTLMM 131
           CH K  DD AHLT   ++E  LM+
Sbjct: 67  CHEKGRDDGAHLTRATDKEPALMI 88

BLAST of IVF0016216 vs. ExPASy TrEMBL
Match: C6JSM1 (CCHC-type domain-containing protein OS=Sorghum bicolor OX=4558 GN=Sb1475s002010 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 5.3e-13
Identity = 55/134 (41.04%), Postives = 76/134 (56.72%), Query Frame = 0

Query: 1   MKTYKEQTVRLRGKDNNTNGQLLLTHVEWKARQKLNNGDNFSVNNGHRSYGSDHERWQGQ 60
           +K Y+E+T R  G+  +  GQ+LLT  EW+ARQ+ + GD    + G RS         G 
Sbjct: 197 LKAYEERTRRGVGEGRSEAGQVLLTQAEWEARQRKSTGDG---SGGSRSQ-------DGG 256

Query: 61  RRGRSHGRGVEHQNSMGGTRNTRK-GTRDKSHIKCFTCNKMGHYTSKCHG--KIHDDEAH 120
            RGR  GRG   +   GG R+    G RDKSHIKCF C++MGHY ++C G  K  ++EAH
Sbjct: 257 GRGRGRGRGGGGRGGRGGQRDAASTGKRDKSHIKCFKCHQMGHYANRCPGVEKKKEEEAH 316

Query: 121 LTCTVEEERTLMMV 132
                  E T+++V
Sbjct: 317 HVRAAPLEPTVLLV 320

BLAST of IVF0016216 vs. ExPASy TrEMBL
Match: A0A5K0VFR7 (Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS1129 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 5.9e-12
Identity = 55/138 (39.86%), Postives = 75/138 (54.35%), Query Frame = 0

Query: 1   MKTYKEQTV-RLRGKDNNTNGQLLLTHVEWKARQKLNNGDNFSV--NNGHRSYGSDHERW 60
           +KTY+E++  R  G   N + QLLLT  EW+ARQK +  D  S     GHR  G      
Sbjct: 232 LKTYEERSCPRAFGTGGNGDAQLLLTQAEWEARQKRSGSDPSSTRRETGHREGGVRSRGG 291

Query: 61  QGQRRGRSH-GRG----VEHQNSMGGTRNTRKGTRDKSHIKCFTCNKMGHYTSKCHGKIH 120
           +G+ RGR   GRG     +  +  GG        RD+SHI+CF CN++GHY  +C     
Sbjct: 292 RGRDRGRGRGGRGDFPLKDRASGSGG------DGRDRSHIRCFNCNELGHYADRCKAPKK 351

Query: 121 DDEAHLTCTVEEERTLMM 131
            +EAHLT T + E TL++
Sbjct: 352 KEEAHLTQTDDTEPTLLL 363

BLAST of IVF0016216 vs. NCBI nr
Match: KAA0039661.1 (keratin, type I cytoskeletal 10-like [Cucumis melo var. makuwa] >TYJ95545.1 keratin, type I cytoskeletal 10-like [Cucumis melo var. makuwa])

HSP 1 Score: 277 bits (708), Expect = 5.10e-94
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0

Query: 1   MKTYKEQTVRLRGKDNNTNGQLLLTHVEWKARQKLNNGDNFSVNNGHRSYGSDHERWQGQ 60
           MKTYKEQTVRLRGKDNNTNGQLLLTHVEWKARQKLNNGDNFSVNNGHRSYGSDHERWQGQ
Sbjct: 1   MKTYKEQTVRLRGKDNNTNGQLLLTHVEWKARQKLNNGDNFSVNNGHRSYGSDHERWQGQ 60

Query: 61  RRGRSHGRGVEHQNSMGGTRNTRKGTRDKSHIKCFTCNKMGHYTSKCHGKIHDDEAHLTC 120
           RRGRSHGRGVEHQNSMGGTRNTRKGTRDKSHIKCFTCNKMGHYTSKCHGKIHDDEAHLTC
Sbjct: 61  RRGRSHGRGVEHQNSMGGTRNTRKGTRDKSHIKCFTCNKMGHYTSKCHGKIHDDEAHLTC 120

Query: 121 TVEEERTLMMVVF 133
           TVEEERTLMMVVF
Sbjct: 121 TVEEERTLMMVVF 133

BLAST of IVF0016216 vs. NCBI nr
Match: XP_038889342.1 (uncharacterized protein LOC120079255 [Benincasa hispida])

HSP 1 Score: 173 bits (439), Expect = 7.33e-52
Identity = 86/132 (65.15%), Postives = 97/132 (73.48%), Query Frame = 0

Query: 1   MKTYKEQTVRLRGKDNNTNGQLLLTHVEWKARQKLNNGDNFSVNNGHRSYGSDHERWQGQ 60
           MK Y+E+  RL+G   N++GQLLLTH EWK RQK NN +N+SVN    S GSD ERWQG+
Sbjct: 10  MKAYEERMARLQGNYKNSDGQLLLTHAEWKTRQKWNNDENYSVNKECGSGGSDRERWQGR 69

Query: 61  RRGRSHGRGVEHQNSMGGTRNTRKGTRDKSHIKCFTCNKMGHYTSKCHGKIHDDEAHLTC 120
            R    GRG E QNS GGT NT  GTRDKSHIKCFTCNK GHY S+C GK  DDEAHLTC
Sbjct: 70  GRSHGRGRGEERQNSAGGTSNTENGTRDKSHIKCFTCNKRGHYASECRGKGRDDEAHLTC 129

Query: 121 TVEEERTLMMVV 132
            V+EE TLMM +
Sbjct: 130 VVDEEPTLMMAI 141

BLAST of IVF0016216 vs. NCBI nr
Match: XP_031745069.1 (uncharacterized protein LOC116405247 [Cucumis sativus])

HSP 1 Score: 166 bits (421), Expect = 3.18e-49
Identity = 84/132 (63.64%), Postives = 97/132 (73.48%), Query Frame = 0

Query: 1   MKTYKEQTVRLRGKDNNTNGQLLLTHVEWKARQKLNNGDNFSVNNGHRSYGSDHERWQGQ 60
           MK Y+E+T RLR  +NNT+GQLLLTH EWKARQK ++GDN S+  G    G+D  RW+G+
Sbjct: 85  MKAYEERTTRLRENNNNTDGQLLLTHAEWKARQKGHSGDNSSMTKGREFGGTDRGRWRGR 144

Query: 61  RRGRSHGRGVEHQNSMGGTRNTRKGTRDKSHIKCFTCNKMGHYTSKCHGKIHDDEAHLTC 120
                 GRG E QNS GGT NT  GTRDKSHIKCFTCNKMGHY S+C GK  D+EAHLTC
Sbjct: 145 ------GRGTERQNSAGGTSNTGNGTRDKSHIKCFTCNKMGHYASECRGKGRDEEAHLTC 204

Query: 121 TVEEERTLMMVV 132
             EEE TLMM +
Sbjct: 205 AAEEEPTLMMAM 210

BLAST of IVF0016216 vs. NCBI nr
Match: XP_031741744.1 (uncharacterized protein LOC116403940 [Cucumis sativus])

HSP 1 Score: 167 bits (423), Expect = 1.97e-48
Identity = 86/132 (65.15%), Postives = 98/132 (74.24%), Query Frame = 0

Query: 1   MKTYKEQTVRLRGKDNNTNGQLLLTHVEWKARQKLNNGDNFSVNNGHRSYGSDHERWQGQ 60
           MK YKE+T RLR  +NNT+ QLLLTH EWKARQK ++GDN S+N G    G+D  RW+G+
Sbjct: 85  MKAYKERTTRLRENNNNTDRQLLLTHAEWKARQKGHSGDNSSMNKGRGFSGTDRGRWRGR 144

Query: 61  RRGRSHGRGVEHQNSMGGTRNTRKGTRDKSHIKCFTCNKMGHYTSKCHGKIHDDEAHLTC 120
                 GRG E QNS GGT NT  GTRDKSHIKCFTCNKMGHY S+C GK  DDEAHLTC
Sbjct: 145 ------GRGTERQNSAGGTTNTGNGTRDKSHIKCFTCNKMGHYASECCGKGRDDEAHLTC 204

Query: 121 TVEEERTLMMVV 132
            VEEE +LMM +
Sbjct: 205 VVEEEPSLMMAM 210

BLAST of IVF0016216 vs. NCBI nr
Match: XP_031745073.1 (uncharacterized protein LOC116405251 [Cucumis sativus])

HSP 1 Score: 168 bits (425), Expect = 1.68e-47
Identity = 85/132 (64.39%), Postives = 98/132 (74.24%), Query Frame = 0

Query: 1   MKTYKEQTVRLRGKDNNTNGQLLLTHVEWKARQKLNNGDNFSVNNGHRSYGSDHERWQGQ 60
           MK Y+E+T RLR  +NNT+GQLLLTH EWKARQK ++GDN S+  G    G+D  RW+G+
Sbjct: 187 MKAYEERTTRLRENNNNTDGQLLLTHAEWKARQKGHSGDNSSMTKGREFGGTDRGRWRGR 246

Query: 61  RRGRSHGRGVEHQNSMGGTRNTRKGTRDKSHIKCFTCNKMGHYTSKCHGKIHDDEAHLTC 120
                 GRG E QNS GGT NT  GTRDKSHIKCFTCNKMGHY S+C GK  D+EAHLTC
Sbjct: 247 ------GRGTERQNSAGGTSNTGNGTRDKSHIKCFTCNKMGHYASECRGKGRDEEAHLTC 306

Query: 121 TVEEERTLMMVV 132
            VEEE TLMM +
Sbjct: 307 AVEEEPTLMMAM 312

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TDE32.5e-71100.00Keratin, type I cytoskeletal 10-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5D3B7473.6e-2569.05Keratin, type I cytoskeletal 9-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A5A7SIJ08.2e-1458.33Keratin, type I cytoskeletal 9-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
C6JSM15.3e-1341.04CCHC-type domain-containing protein OS=Sorghum bicolor OX=4558 GN=Sb1475s002010 ... [more]
A0A5K0VFR75.9e-1239.86Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS11... [more]
Match NameE-valueIdentityDescription
KAA0039661.15.10e-94100.00keratin, type I cytoskeletal 10-like [Cucumis melo var. makuwa] >TYJ95545.1 kera... [more]
XP_038889342.17.33e-5265.15uncharacterized protein LOC120079255 [Benincasa hispida][more]
XP_031745069.13.18e-4963.64uncharacterized protein LOC116405247 [Cucumis sativus][more]
XP_031741744.11.97e-4865.15uncharacterized protein LOC116403940 [Cucumis sativus][more]
XP_031745073.11.68e-4764.39uncharacterized protein LOC116405251 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 38..88
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 49..69
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 93..107
score: 8.976924
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 77..115

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0016216.2IVF0016216.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding