IVF0016188 (gene) Melon (IVF77) v1

Overview


Name	IVF0016188
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	ThiF domain-containing protein
Location	chr01: 2996700 .. 2997569 (+)
RNA-Seq Expression	IVF0016188
Synteny	IVF0016188

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCCTCAATCCTCAATCCTCAATCCTCAATCCTCAATCCTCAATCCTCAATCCTCGTCTTCATCTTCTTCTTCCGTCGCTCGGACATCATGAATCGAAGATCCAGAAGATCGGGGAACTCTCAATCCGAGACGTTTCACAAGTATCTAAAGCCTGGTGCGCTAGCACAAATTCGGAATTCTCGGATGATCGCTCGATTCAATCGGGTTAATTTGGTATCTCAGATCTACTCCACTACTTCTTCCAGTCTACCGATCGACTCCGGTTTACTTCAGGTCAACATTGTTGATGCTTCTCCTTCCTTTGCTGGGAGGGTGTATGGCCCTCTCTCTTTGCAGAGGAAGAAACTTTTGGCTTCCAAGTCTTTGTGGTTTCTCGCTTCTAGCCCTACCAATCTCACACCTGATTCTCCGCCTGATCCGGTTATTGAAGTGTTAGGGGGGTGAATTGTATAAGTCTTTTTCTATGGAATACTTTCAACCTGTGAATCGAGTCTTTCTTTGTGAAATTAAATATCAAACTGTAATACATGATACCTTTTGTAGGTAGTGTTGACGATGGGTTGTGAATTTTATTCTTCTTGATTTTGATCGGATTTAAATAATAAGATCTATCATATGATCGATCTATTGTGTTTACGACACCGAGTCGGTTTTATTGTTCAGTTTTGTTTATCTACGCCATTCTATTGAACTTATCTAAGCTAGGGCTCATTTTGGACCTTAATGCTTGGGGCTTATGTTGGACTTCTGGTCAACTTTGGTCCTCGACTTATAAAGTAAGGGTTCGAAGCATTTGCAAACTTCTTCCAGCAATTTCACCAATAATGCGGGTCAGTTTTCTCTTGTTTACTTGGTTTGTTCATTAACTG

mRNA sequence

ATCCTCAATCCTCAATCCTCAATCCTCAATCCTCAATCCTCAATCCTCAATCCTCGTCTTCATCTTCTTCTTCCGTCGCTCGGACATCATGAATCGAAGATCCAGAAGATCGGGGAACTCTCAATCCGAGACGTTTCACAAGTATCTAAAGCCTGGTGCGCTAGCACAAATTCGGAATTCTCGGATGATCGCTCGATTCAATCGGGTTAATTTGGTATCTCAGATCTACTCCACTACTTCTTCCAGTCTACCGATCGACTCCGGTTTACTTCAGGTCAACATTGTTGATGCTTCTCCTTCCTTTGCTGGGAGGGTGTATGGCCCTCTCTCTTTGCAGAGGAAGAAACTTTTGGCTTCCAAGTCTTTGTGGTTTCTCGCTTCTAGCCCTACCAATCTCACACCTGATTCTCCGCCTGATCCGGTTATTGAAGTGTTAGGGGGGTGAATTGTATAAGTCTTTTTCTATGGAATACTTTCAACCTGTGAATCGAGTCTTTCTTTGTGAAATTAAATATCAAACTGTAATACATGATACCTTTTGTAGGTAGTGTTGACGATGGGTTGTGAATTTTATTCTTCTTGATTTTGATCGGATTTAAATAATAAGATCTATCATATGATCGATCTATTGTGTTTACGACACCGAGTCGGTTTTATTGTTCAGTTTTGTTTATCTACGCCATTCTATTGAACTTATCTAAGCTAGGGCTCATTTTGGACCTTAATGCTTGGGGCTTATGTTGGACTTCTGGTCAACTTTGGTCCTCGACTTATAAAGTAAGGGTTCGAAGCATTTGCAAACTTCTTCCAGCAATTTCACCAATAATGCGGGTCAGTTTTCTCTTGTTTACTTGGTTTGTTCATTAACTG

Coding sequence (CDS)

ATGAATCGAAGATCCAGAAGATCGGGGAACTCTCAATCCGAGACGTTTCACAAGTATCTAAAGCCTGGTGCGCTAGCACAAATTCGGAATTCTCGGATGATCGCTCGATTCAATCGGGTTAATTTGGTATCTCAGATCTACTCCACTACTTCTTCCAGTCTACCGATCGACTCCGGTTTACTTCAGGTCAACATTGTTGATGCTTCTCCTTCCTTTGCTGGGAGGGTGTATGGCCCTCTCTCTTTGCAGAGGAAGAAACTTTTGGCTTCCAAGTCTTTGTGGTTTCTCGCTTCTAGCCCTACCAATCTCACACCTGATTCTCCGCCTGATCCGGTTATTGAAGTGTTAGGGGGGTGA

Protein sequence

MNRRSRRSGNSQSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTTSSSLPIDSGLLQVNIVDASPSFAGRVYGPLSLQRKKLLASKSLWFLASSPTNLTPDSPPDPVIEVLGG

Homology

[Close]

BLAST of IVF0016188 vs. ExPASy TrEMBL
Match: A0A5D3C9X6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G004250 PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 9.1e-57
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0


Query: 1   MNRRSRRSGNSQSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTTSSSLPIDSGL 60
           MNRRSRRSGNSQSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTTSSSLPIDSGL
Sbjct: 1   MNRRSRRSGNSQSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTTSSSLPIDSGL 60

Query: 61  LQVNIVDASPSFAGRVYGPLSLQRKKLLASKSLWFLASSPTNLTPDSPPDPVIEVLGG 119
           LQVNIVDASPSFAGRVYGPLSLQRKKLLASKSLWFLASSPTNLTPDSPPDPVIEVLGG
Sbjct: 61  LQVNIVDASPSFAGRVYGPLSLQRKKLLASKSLWFLASSPTNLTPDSPPDPVIEVLGG 118

[Close]

BLAST of IVF0016188 vs. ExPASy TrEMBL
Match: A0A1S3C0X0 (uncharacterized protein LOC103495597 OS=Cucumis melo OX=3656 GN=LOC103495597 PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 9.1e-57
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0


Query: 1   MNRRSRRSGNSQSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTTSSSLPIDSGL 60
           MNRRSRRSGNSQSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTTSSSLPIDSGL
Sbjct: 1   MNRRSRRSGNSQSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTTSSSLPIDSGL 60

Query: 61  LQVNIVDASPSFAGRVYGPLSLQRKKLLASKSLWFLASSPTNLTPDSPPDPVIEVLGG 119
           LQVNIVDASPSFAGRVYGPLSLQRKKLLASKSLWFLASSPTNLTPDSPPDPVIEVLGG
Sbjct: 61  LQVNIVDASPSFAGRVYGPLSLQRKKLLASKSLWFLASSPTNLTPDSPPDPVIEVLGG 118

[Close]

BLAST of IVF0016188 vs. ExPASy TrEMBL
Match: A0A0A0K3K2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G043610 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 1.8e-52
Identity = 113/118 (95.76%), Postives = 113/118 (95.76%), Query Frame = 0


Query: 1   MNRRSRRSGNSQSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTTSSSLPIDSGL 60
           MNRRSRRSGNSQSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYS   SSLPIDS L
Sbjct: 1   MNRRSRRSGNSQSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYS-APSSLPIDSAL 60

Query: 61  LQVNIVDASPSFAGRVYGPLSLQRKKLLASKSLWFLASSPTNLTPDSPPDPVIEVLGG 119
           LQVNIVDASPSFAGR YGPLSLQRKKLLASKSLWFLASSPTNLTPDSPPDPVIEVLGG
Sbjct: 61  LQVNIVDASPSFAGRAYGPLSLQRKKLLASKSLWFLASSPTNLTPDSPPDPVIEVLGG 117

[Close]

BLAST of IVF0016188 vs. ExPASy TrEMBL
Match: A0A6J1GLZ8 (uncharacterized protein LOC111455201 OS=Cucurbita moschata OX=3662 GN=LOC111455201 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 1.2e-48
Identity = 110/124 (88.71%), Postives = 111/124 (89.52%), Query Frame = 0


Query: 1   MNRRSRRSGNSQSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTTSSSL-----P 60
           MNRRSRRSGNS SETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYST SSSL     P
Sbjct: 1   MNRRSRRSGNSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRSSSLSPSTAP 60

Query: 61  IDSGLLQVNIVDASPSFAGRVYGPLSLQRKKLLASK-SLWFLASSPTNLTPDSPPDPVIE 119
           I SGLLQVNI DASP FAGRVYGPL LQRKKLLA+K SLWFLASSPTNLTPDSPPDPVI 
Sbjct: 61  IGSGLLQVNIADASPCFAGRVYGPLCLQRKKLLAAKSSLWFLASSPTNLTPDSPPDPVIG 120

[Close]

BLAST of IVF0016188 vs. ExPASy TrEMBL
Match: A0A6J1EXJ2 (uncharacterized protein LOC111437092 OS=Cucurbita moschata OX=3662 GN=LOC111437092 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 2.2e-47
Identity = 108/126 (85.71%), Postives = 110/126 (87.30%), Query Frame = 0


Query: 1   MNRRSR---RSGNSQSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTTSSSL--- 60
           MNRRSR   RS  S SETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYST  SSL   
Sbjct: 1   MNRRSRAFPRSSKSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRFSSLSPP 60

Query: 61  --PIDSGLLQVNIVDASPSFAGRVYGPLSLQRKKLLASKSLWFLASSPTNLTPDSPPDPV 119
             PIDS LLQVNIVDASP FAGRVYGPL LQRKKLLA+KSLWFL+SSPTNLTPDSPPDPV
Sbjct: 61  TAPIDSALLQVNIVDASPCFAGRVYGPLCLQRKKLLAAKSLWFLSSSPTNLTPDSPPDPV 120

[Close]

BLAST of IVF0016188 vs. NCBI nr
Match: XP_008455441.1 (PREDICTED: uncharacterized protein LOC103495597 [Cucumis melo] >KAA0040243.1 uncharacterized protein E6C27_scaffold888G00280 [Cucumis melo var. makuwa] >TYK07106.1 uncharacterized protein E5676_scaffold13G004250 [Cucumis melo var. makuwa])

HSP 1 Score: 228 bits (582), Expect = 2.77e-75
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0


Query: 1   MNRRSRRSGNSQSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTTSSSLPIDSGL 60
           MNRRSRRSGNSQSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTTSSSLPIDSGL
Sbjct: 1   MNRRSRRSGNSQSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTTSSSLPIDSGL 60

Query: 61  LQVNIVDASPSFAGRVYGPLSLQRKKLLASKSLWFLASSPTNLTPDSPPDPVIEVLGG 118
           LQVNIVDASPSFAGRVYGPLSLQRKKLLASKSLWFLASSPTNLTPDSPPDPVIEVLGG
Sbjct: 61  LQVNIVDASPSFAGRVYGPLSLQRKKLLASKSLWFLASSPTNLTPDSPPDPVIEVLGG 118

[Close]

BLAST of IVF0016188 vs. NCBI nr
Match: XP_038888488.1 (uncharacterized protein LOC120078321 [Benincasa hispida])

HSP 1 Score: 216 bits (550), Expect = 2.40e-70
Identity = 114/122 (93.44%), Postives = 115/122 (94.26%), Query Frame = 0


Query: 1   MNRRSRRSGNSQSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTTSSS----LPI 60
           MNRRSRRSGNSQSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYST SSS    +PI
Sbjct: 1   MNRRSRRSGNSQSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRSSSYPSTIPI 60

Query: 61  DSGLLQVNIVDASPSFAGRVYGPLSLQRKKLLASKSLWFLASSPTNLTPDSPPDPVIEVL 118
           DSGLLQVNIVDASPSFAGRVYGPL LQRKKLLASKSLWFL SSPTNLTPDSPPDPVIEVL
Sbjct: 61  DSGLLQVNIVDASPSFAGRVYGPLCLQRKKLLASKSLWFLTSSPTNLTPDSPPDPVIEVL 120

[Close]

BLAST of IVF0016188 vs. NCBI nr
Match: XP_004144589.1 (uncharacterized protein LOC101204134 [Cucumis sativus] >KGN43519.1 hypothetical protein Csa_020443 [Cucumis sativus])

HSP 1 Score: 214 bits (545), Expect = 1.18e-69
Identity = 113/118 (95.76%), Postives = 113/118 (95.76%), Query Frame = 0


Query: 1   MNRRSRRSGNSQSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTTSSSLPIDSGL 60
           MNRRSRRSGNSQSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYS  SS LPIDS L
Sbjct: 1   MNRRSRRSGNSQSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSAPSS-LPIDSAL 60

Query: 61  LQVNIVDASPSFAGRVYGPLSLQRKKLLASKSLWFLASSPTNLTPDSPPDPVIEVLGG 118
           LQVNIVDASPSFAGR YGPLSLQRKKLLASKSLWFLASSPTNLTPDSPPDPVIEVLGG
Sbjct: 61  LQVNIVDASPSFAGRAYGPLSLQRKKLLASKSLWFLASSPTNLTPDSPPDPVIEVLGG 117

[Close]

BLAST of IVF0016188 vs. NCBI nr
Match: XP_022952539.1 (uncharacterized protein LOC111455201 [Cucurbita moschata] >KAG6572294.1 hypothetical protein SDJN03_29022, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011910.1 hypothetical protein SDJN02_26817, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 201 bits (512), Expect = 1.60e-64
Identity = 110/124 (88.71%), Postives = 111/124 (89.52%), Query Frame = 0


Query: 1   MNRRSRRSGNSQSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTTSSSL-----P 60
           MNRRSRRSGNS SETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYST SSSL     P
Sbjct: 1   MNRRSRRSGNSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRSSSLSPSTAP 60

Query: 61  IDSGLLQVNIVDASPSFAGRVYGPLSLQRKKLLASKS-LWFLASSPTNLTPDSPPDPVIE 118
           I SGLLQVNI DASP FAGRVYGPL LQRKKLLA+KS LWFLASSPTNLTPDSPPDPVI 
Sbjct: 61  IGSGLLQVNIADASPCFAGRVYGPLCLQRKKLLAAKSSLWFLASSPTNLTPDSPPDPVIG 120

[Close]

BLAST of IVF0016188 vs. NCBI nr
Match: XP_023530330.1 (uncharacterized protein LOC111792933 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 199 bits (507), Expect = 9.87e-64
Identity = 109/126 (86.51%), Postives = 111/126 (88.10%), Query Frame = 0


Query: 1   MNRRSR---RSGNSQSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTTSSSL--- 60
           MNRRSR   RS  S SETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYST SSSL   
Sbjct: 1   MNRRSRAFSRSSKSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRSSSLSPP 60

Query: 61  --PIDSGLLQVNIVDASPSFAGRVYGPLSLQRKKLLASKSLWFLASSPTNLTPDSPPDPV 118
             PIDS LLQVNIVDASP FAGRVYGPL LQRKKLLA+KSLWFL+SSPTNLTPDSPPDPV
Sbjct: 61  TAPIDSALLQVNIVDASPCFAGRVYGPLCLQRKKLLAAKSLWFLSSSPTNLTPDSPPDPV 120

[Close]

BLAST of IVF0016188 vs. TAIR 10
Match: AT5G54970.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26960.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 58.9 bits (141), Expect = 3.1e-09
Identity = 38/95 (40.00%), Postives = 57/95 (60.00%), Query Frame = 0


Query: 7  RSGNSQSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQI--------YSTTSSSLPIDS 66
          +S   +S+ FH+YLKPGALAQIRNSR+ AR +  +LVS+          S + +S+   +
Sbjct: 6  KSPARRSDGFHRYLKPGALAQIRNSRINAR-STTSLVSRSSLSQLVDPISPSENSVDEAA 65

Query: 67 GLLQVNIVDASPSFAGRVYGPLSLQRKKLLASKSL 94
             +   +D  P    ++YGP S QRKKL A++S+
Sbjct: 66 AASRNLTIDQVPHLLRKIYGPYSYQRKKLAAARSV 99

[Close]

BLAST of IVF0016188 vs. TAIR 10
Match: AT4G26960.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G54970.1); Has 22 Blast hits to 22 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 50.8 bits (120), Expect = 8.5e-07
Identity = 39/116 (33.62%), Postives = 61/116 (52.59%), Query Frame = 0


Query: 7   RSGNSQSETFHKYLKPGALAQIRNSRM-IARFN---RVNLVSQIYSTTSSSLPIDSGLLQ 66
           RS   +++ FH+Y+KPGALAQIRN+R+  AR N     +L   +   +SSS    +   Q
Sbjct: 35  RSPVRRNDGFHRYMKPGALAQIRNARINNARSNFPLTRSLSDPVDPPSSSSESPIAATPQ 94

Query: 67  VNIVDASPSFAGRVYGPLSLQRKKLLASKSLWFLASSPTNLTPDSPPDPVIEVLGG 119
              +D  P    ++YGP  + RKKL  ++      S+   L P   P+ ++E + G
Sbjct: 95  TITMDQMPHLLSKIYGPYRIGRKKLGPAR------SAMVKLNPS--PNSILESING 142

The following BLAST results are available for this feature:

BLAST of IVF0016188 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0016188 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C9X6	9.1e-57	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3C0X0	9.1e-57	100.00	uncharacterized protein LOC103495597 OS=Cucumis melo OX=3656 GN=LOC103495597 PE=...	[more]
A0A0A0K3K2	1.8e-52	95.76	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G043610 PE=4 SV=1	[more]
A0A6J1GLZ8	1.2e-48	88.71	uncharacterized protein LOC111455201 OS=Cucurbita moschata OX=3662 GN=LOC1114552...	[more]
A0A6J1EXJ2	2.2e-47	85.71	uncharacterized protein LOC111437092 OS=Cucurbita moschata OX=3662 GN=LOC1114370...	[more]

BLAST of IVF0016188 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008455441.1	2.77e-75	100.00	PREDICTED: uncharacterized protein LOC103495597 [Cucumis melo] >KAA0040243.1 unc...	[more]
XP_038888488.1	2.40e-70	93.44	uncharacterized protein LOC120078321 [Benincasa hispida]	[more]
XP_004144589.1	1.18e-69	95.76	uncharacterized protein LOC101204134 [Cucumis sativus] >KGN43519.1 hypothetical ...	[more]
XP_022952539.1	1.60e-64	88.71	uncharacterized protein LOC111455201 [Cucurbita moschata] >KAG6572294.1 hypothet...	[more]
XP_023530330.1	9.87e-64	86.51	uncharacterized protein LOC111792933 [Cucurbita pepo subsp. pepo]	[more]

BLAST of IVF0016188 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G54970.1	3.1e-09	40.00	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G26960.1	8.5e-07	33.62	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35495	OS06G0679600 PROTEIN	coord: 1..117
None	No IPR available	PANTHER	PTHR35495:SF10	SUBFAMILY NOT NAMED	coord: 1..117

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0016188.1	IVF0016188.1	mRNA