IVF0016137 (gene) Melon (IVF77) v1

Overview
NameIVF0016137
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionReverse transcriptase domain-containing protein
Locationchr08: 21842730 .. 21842984 (+)
RNA-Seq ExpressionIVF0016137
SyntenyIVF0016137
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGCTTGATCATCCTTCTTTCAAAGCGACTATTCCGACTTGGTGGAATGTGCAGGCTCAAGGAAGGTGGGAGGGTTTTCAGTTTGTGAAGAAGTTGAAATCTTTAAACAGTTAGCTTAAAGTTTGGAATAGAGAGGTTTTTGGTGACATTGGATCGAAAAAGAACGAATTTAATATTCAGATTGATGAGATTGATGTTCTTAAGTTGGAAGGCCCTTTAATAGAGATCTCAAGGAGGAAAGGGTTGGTTTAA

mRNA sequence

ATGTGGCTTGATCATCCTTCTTTCAAAGCGACTATTCCGACTTGGTGGAATGTGCAGGCTCAAGGAAGGTGGGAGGGTTTTCAGTTTCTTAAAGTTTGGAATAGAGAGGTTTTTGGTGACATTGGATCGAAAAAGAACGAATTTAATATTCAGATTGATGAGATTGATGTTCTTAAGTTGGAAGGCCCTTTAATAGAGATCTCAAGGAGGAAAGGGTTGGTTTAA

Coding sequence (CDS)

ATGTGGCTTGATCATCCTTCTTTCAAAGCGACTATTCCGACTTGGTGGAATGTGCAGGCTCAAGGAAGGTGGGAGGGTTTTCAGTTTCTTAAAGTTTGGAATAGAGAGGTTTTTGGTGACATTGGATCGAAAAAGAACGAATTTAATATTCAGATTGATGAGATTGATGTTCTTAAGTTGGAAGGCCCTTTAATAGAGATCTCAAGGAGGAAAGGGTTGGTTTAA

Protein sequence

MWLDHPSFKATIPTWWNVQAQGRWEGFQFLKVWNREVFGDIGSKKNEFNIQIDEIDVLKLEGPLIEISRRKGLV
Homology
BLAST of IVF0016137 vs. ExPASy TrEMBL
Match: A0A5A7SKV1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold848G00350 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 7.8e-14
Identity = 39/76 (51.32%), Postives = 48/76 (63.16%), Query Frame = 0

Query: 1   MWLDHPSFKATIPTWWNVQAQGRWEGFQF------------LKVWNREVFGDIGSKKNEF 60
           MWL+HPSF A +  WW+   QGRWEGF+F            LKVW+RE F +I +KK   
Sbjct: 196 MWLEHPSFNANLSFWWSTMVQGRWEGFRFRFMEKLRALKGNLKVWSREAFRNIRTKKKNI 255

Query: 61  NIQIDEIDVLKLEGPL 65
             +IDEID L+LEGPL
Sbjct: 256 IARIDEIDTLELEGPL 271

BLAST of IVF0016137 vs. ExPASy TrEMBL
Match: A0A0A0M0E5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G638490 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.5e-12
Identity = 39/74 (52.70%), Postives = 48/74 (64.86%), Query Frame = 0

Query: 1  MWLDHPSFKATIPTWWNVQAQGRWEGFQF----------LKVWNREVFGDIGSKKNEFNI 60
          MWL+HPSFKA I +WWN   QGRWEG++F          L+V  REV GDI  KK E   
Sbjct: 1  MWLEHPSFKADISSWWNKPVQGRWEGYRFMEKLRVLKCKLRVQKREVCGDIQVKKKEILN 60

Query: 61 QIDEIDVLKLEGPL 65
          +I+EID L+L+ PL
Sbjct: 61 RIEEIDALELDEPL 74

BLAST of IVF0016137 vs. ExPASy TrEMBL
Match: A0A5A7UQK0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G00550 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.6e-11
Identity = 34/73 (46.58%), Postives = 45/73 (61.64%), Query Frame = 0

Query: 1  MWLDHPSFKATIPTWWNVQAQGRWEGFQF----------LKVWNREVFGDIGSKKNEFNI 60
          MWL+HPSFKA   +WW++  QGRW G+ F          L+VWN EVFGDI  K  E   
Sbjct: 1  MWLEHPSFKANFSSWWSMSVQGRWNGYHFMEKLRALKIKLRVWNNEVFGDIQVKMKEIIK 60

Query: 61 QIDEIDVLKLEGP 64
          +I++ID  +L+ P
Sbjct: 61 RIEKIDAFELDVP 73

BLAST of IVF0016137 vs. ExPASy TrEMBL
Match: A0A5E4FED8 (Reverse transcriptase domain-containing protein (Fragment) OS=Prunus dulcis OX=3755 GN=ALMOND_2B035166 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 8.3e-08
Identity = 29/81 (35.80%), Postives = 44/81 (54.32%), Query Frame = 0

Query: 1   MWLDHPSFKATIPTWWNVQAQGRWEGFQF----------LKVWNREVFGDIGSKKNEFNI 60
           MW++HP FK     WW       WEG++F          +KVWN+EVFGD+ S K E   
Sbjct: 87  MWIEHPEFKKKFKQWWGEDQINGWEGYKFSRRLRTIKQKIKVWNKEVFGDLVSAKKEAEA 146

Query: 61  QIDEIDVLKLEGPLIEISRRK 72
           +I  +D+++ +G L    R++
Sbjct: 147 RIAALDLMEGQGGLDNTLRKE 167

BLAST of IVF0016137 vs. ExPASy TrEMBL
Match: A0A5H2Y6K0 (VIRB2-interacting protein 2 OS=Prunus dulcis OX=3755 GN=Prudu_1151S000200 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 8.3e-08
Identity = 29/81 (35.80%), Postives = 44/81 (54.32%), Query Frame = 0

Query: 1  MWLDHPSFKATIPTWWNVQAQGRWEGFQF----------LKVWNREVFGDIGSKKNEFNI 60
          MW++HP FK     WW       WEG++F          +KVWN+EVFGD+ S K E   
Sbjct: 1  MWIEHPEFKKKFKQWWGEDQINGWEGYKFSRRLRTIKQKIKVWNKEVFGDLVSAKKEAEA 60

Query: 61 QIDEIDVLKLEGPLIEISRRK 72
          +I  +D+++ +G L    R++
Sbjct: 61 RIAALDLMEGQGGLDNTLRKE 81

BLAST of IVF0016137 vs. NCBI nr
Match: KAA0031794.1 (hypothetical protein E6C27_scaffold848G00350 [Cucumis melo var. makuwa])

HSP 1 Score: 86.3 bits (212), Expect = 3.07e-18
Identity = 39/76 (51.32%), Postives = 48/76 (63.16%), Query Frame = 0

Query: 1   MWLDHPSFKATIPTWWNVQAQGRWEGFQF------------LKVWNREVFGDIGSKKNEF 60
           MWL+HPSF A +  WW+   QGRWEGF+F            LKVW+RE F +I +KK   
Sbjct: 196 MWLEHPSFNANLSFWWSTMVQGRWEGFRFRFMEKLRALKGNLKVWSREAFRNIRTKKKNI 255

Query: 61  NIQIDEIDVLKLEGPL 64
             +IDEID L+LEGPL
Sbjct: 256 IARIDEIDTLELEGPL 271

BLAST of IVF0016137 vs. NCBI nr
Match: KAA0057384.1 (hypothetical protein E6C27_scaffold280G002530 [Cucumis melo var. makuwa] >TYK30082.1 hypothetical protein E5676_scaffold216G00550 [Cucumis melo var. makuwa])

HSP 1 Score: 78.6 bits (192), Expect = 3.04e-15
Identity = 34/73 (46.58%), Postives = 45/73 (61.64%), Query Frame = 0

Query: 1  MWLDHPSFKATIPTWWNVQAQGRWEGFQF----------LKVWNREVFGDIGSKKNEFNI 60
          MWL+HPSFKA   +WW++  QGRW G+ F          L+VWN EVFGDI  K  E   
Sbjct: 1  MWLEHPSFKANFSSWWSMSVQGRWNGYHFMEKLRALKIKLRVWNNEVFGDIQVKMKEIIK 60

Query: 61 QIDEIDVLKLEGP 63
          +I++ID  +L+ P
Sbjct: 61 RIEKIDAFELDVP 73

BLAST of IVF0016137 vs. NCBI nr
Match: BBN69746.1 (VIRB2-interacting protein 2 [Prunus dulcis])

HSP 1 Score: 66.6 bits (161), Expect = 1.24e-10
Identity = 29/81 (35.80%), Postives = 44/81 (54.32%), Query Frame = 0

Query: 1  MWLDHPSFKATIPTWWNVQAQGRWEGFQF----------LKVWNREVFGDIGSKKNEFNI 60
          MW++HP FK     WW       WEG++F          +KVWN+EVFGD+ S K E   
Sbjct: 1  MWIEHPEFKKKFKQWWGEDQINGWEGYKFSRRLRTIKQKIKVWNKEVFGDLVSAKKEAEA 60

Query: 61 QIDEIDVLKLEGPLIEISRRK 71
          +I  +D+++ +G L    R++
Sbjct: 61 RIAALDLMEGQGGLDNTLRKE 81

BLAST of IVF0016137 vs. NCBI nr
Match: VVA25489.1 (Hypothetical predicted protein, partial [Prunus dulcis])

HSP 1 Score: 66.6 bits (161), Expect = 1.24e-10
Identity = 29/81 (35.80%), Postives = 44/81 (54.32%), Query Frame = 0

Query: 1   MWLDHPSFKATIPTWWNVQAQGRWEGFQF----------LKVWNREVFGDIGSKKNEFNI 60
           MW++HP FK     WW       WEG++F          +KVWN+EVFGD+ S K E   
Sbjct: 87  MWIEHPEFKKKFKQWWGEDQINGWEGYKFSRRLRTIKQKIKVWNKEVFGDLVSAKKEAEA 146

Query: 61  QIDEIDVLKLEGPLIEISRRK 71
           +I  +D+++ +G L    R++
Sbjct: 147 RIAALDLMEGQGGLDNTLRKE 167

BLAST of IVF0016137 vs. NCBI nr
Match: PRQ36601.1 (putative RNA-directed DNA polymerase [Rosa chinensis])

HSP 1 Score: 66.2 bits (160), Expect = 1.67e-10
Identity = 29/81 (35.80%), Postives = 44/81 (54.32%), Query Frame = 0

Query: 1  MWLDHPSFKATIPTWWNVQAQGRWEGFQF----------LKVWNREVFGDIGSKKNEFNI 60
          MWL+HPSFK     WW+      W+GF+F          LK+W+RE FGDIG +K     
Sbjct: 1  MWLEHPSFKENFRKWWDEGNCDGWKGFRFMRKLKNVKGKLKIWSRETFGDIGKEKKVVEA 60

Query: 61 QIDEIDVLKLEGPLIEISRRK 71
          +I+E+D  +    +  + +R+
Sbjct: 61 RINELDEEERSAGICVVKKRE 81

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7SKV17.8e-1451.32Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A0A0M0E52.5e-1252.70Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G638490 PE=4 SV=1[more]
A0A5A7UQK01.6e-1146.58Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5E4FED88.3e-0835.80Reverse transcriptase domain-containing protein (Fragment) OS=Prunus dulcis OX=3... [more]
A0A5H2Y6K08.3e-0835.80VIRB2-interacting protein 2 OS=Prunus dulcis OX=3755 GN=Prudu_1151S000200 PE=4 S... [more]
Match NameE-valueIdentityDescription
KAA0031794.13.07e-1851.32hypothetical protein E6C27_scaffold848G00350 [Cucumis melo var. makuwa][more]
KAA0057384.13.04e-1546.58hypothetical protein E6C27_scaffold280G002530 [Cucumis melo var. makuwa] >TYK300... [more]
BBN69746.11.24e-1035.80VIRB2-interacting protein 2 [Prunus dulcis][more]
VVA25489.11.24e-1035.80Hypothetical predicted protein, partial [Prunus dulcis][more]
PRQ36601.11.67e-1035.80putative RNA-directed DNA polymerase [Rosa chinensis][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0016137.1IVF0016137.1mRNA