IVF0016123 (gene) Melon (IVF77) v1

Overview
NameIVF0016123
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionCACTA en-spm transposon protein
Locationchr10: 16015359 .. 16015526 (-)
RNA-Seq ExpressionIVF0016123
SyntenyIVF0016123
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAGAAAAAAACATCGGAAGAGGCATTCTCGACGTCGCATCATGTGTCAGCATAAGGTCCGTCGGGAGAGGAACTCTCGACGCCACTTTGGCCGACGCATGTCACGGCGTCAGAAGAGGCATTCCTGACGTCATGTTGGTATGGCGTCGAAAATGCTTCTCCTAA

mRNA sequence

ATGTCAGAAAAAAACATCGGAAGAGGCATTCTCGACGTCGCATCATGTGTCAGCATAAGGTCCGTCGGGAGAGGAACTCTCGACGCCACTTTGGCCGACGCATGTCACGGCGTCAGAAGAGGCATTCCTGACGTCATGTTGGTATGGCGTCGAAAATGCTTCTCCTAA

Coding sequence (CDS)

ATGTCAGAAAAAAACATCGGAAGAGGCATTCTCGACGTCGCATCATGTGTCAGCATAAGGTCCGTCGGGAGAGGAACTCTCGACGCCACTTTGGCCGACGCATGTCACGGCGTCAGAAGAGGCATTCCTGACGTCATGTTGGTATGGCGTCGAAAATGCTTCTCCTAA

Protein sequence

MSEKNIGRGILDVASCVSIRSVGRGTLDATLADACHGVRRGIPDVMLVWRRKCFS
Homology
BLAST of IVF0016123 vs. ExPASy TrEMBL
Match: A0A5D3CX81 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00790 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.8e-08
Identity = 30/54 (55.56%), Postives = 38/54 (70.37%), Query Frame = 0

Query: 2   SEKNIGRGILDVASCVSIRSVGRGTLDATLADACHGVRRGIPDVMLVWRRKCFS 56
           S  N+G GI D A C  IRS+G  + DAT+ADAC+G+ R I DV+LV RR+C S
Sbjct: 268 SGNNVGSGITDAACCFGIRSIGNASSDATMADACYGIGRDISDVVLVRRRECLS 321

BLAST of IVF0016123 vs. ExPASy TrEMBL
Match: A0A5A7SSC5 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold701G00060 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.1e-04
Identity = 27/53 (50.94%), Postives = 34/53 (64.15%), Query Frame = 0

Query: 3   EKNIGRGILDVASCVSIRSVGRGTLDATLADACHGVRRGIPDVMLVWRRKCFS 56
           +K++GRGI D+   V+  S+GRG  DA      H V RGIPDV+L  RRKC S
Sbjct: 411 KKDVGRGIPDIGGFVAKNSIGRGIPDAVDVVEKHDVGRGIPDVVLFMRRKCLS 463

BLAST of IVF0016123 vs. NCBI nr
Match: KAA0049602.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYK15960.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 67.8 bits (164), Expect = 1.76e-11
Identity = 30/54 (55.56%), Postives = 38/54 (70.37%), Query Frame = 0

Query: 2   SEKNIGRGILDVASCVSIRSVGRGTLDATLADACHGVRRGIPDVMLVWRRKCFS 55
           S  N+G GI D A C  IRS+G  + DAT+ADAC+G+ R I DV+LV RR+C S
Sbjct: 268 SGNNVGSGITDAACCFGIRSIGNASSDATMADACYGIGRDISDVVLVRRRECLS 321

BLAST of IVF0016123 vs. NCBI nr
Match: KAA0032451.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYJ99895.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 55.8 bits (133), Expect = 3.50e-07
Identity = 27/53 (50.94%), Postives = 34/53 (64.15%), Query Frame = 0

Query: 3   EKNIGRGILDVASCVSIRSVGRGTLDATLADACHGVRRGIPDVMLVWRRKCFS 55
           +K++GRGI D+   V+  S+GRG  DA      H V RGIPDV+L  RRKC S
Sbjct: 411 KKDVGRGIPDIGGFVAKNSIGRGIPDAVDVVEKHDVGRGIPDVVLFMRRKCLS 463

BLAST of IVF0016123 vs. NCBI nr
Match: KAA0049649.1 (transposon protein, putative, CACTA, En/Spm sub-class, expressed [Cucumis melo var. makuwa] >TYK08908.1 transposon protein, putative, CACTA, En/Spm sub-class, expressed [Cucumis melo var. makuwa])

HSP 1 Score: 46.6 bits (109), Expect = 4.62e-04
Identity = 21/52 (40.38%), Postives = 30/52 (57.69%), Query Frame = 0

Query: 3   EKNIGRGILDVASCVSIRSVGRGTLDATLADACHGVRRGIPDVMLVWRRKCF 54
           EK++GRGILD +  ++   VGRG  D       H +RRGIP+ +L  R   +
Sbjct: 140 EKDVGRGILDASGFIAKNDVGRGIPDVVDVIGKHDIRRGIPNAVLFMRGNAY 191

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CX812.8e-0855.56Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94... [more]
A0A5A7SSC51.1e-0450.94CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
Match NameE-valueIdentityDescription
KAA0049602.11.76e-1155.56reverse transcriptase [Cucumis melo var. makuwa] >TYK15960.1 reverse transcripta... [more]
KAA0032451.13.50e-0750.94CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYJ99895.1 CACTA en-... [more]
KAA0049649.14.62e-0440.38transposon protein, putative, CACTA, En/Spm sub-class, expressed [Cucumis melo v... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0016123.1IVF0016123.1mRNA