IVF0015997 (gene) Melon (IVF77) v1

Overview


Name	IVF0015997
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	50S ribosomal protein L23, chloroplastic
Location	chr12: 8676851 .. 8677131 (+)
RNA-Seq Expression	IVF0015997
Synteny	IVF0015997

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGGAATCAAATATGCAGTATTTACAGACAAAAGTATTCGGTTATTGGGAAAAATCAATATACTTCTAATGTCGAATCAGGATGAACTAGGACAGAAATAAAGCATTGGGTCGAACTCTTCTTTGGTGTCAAGGTAATAGCTATGAATAGTCATCGACTCCCGGGAAAGGGTAGAAGAATGGGACCTATTATGGGACATACAATGCATTACAGACGTATGATCATTACGCTTCAACCGGGTTATTCTATTCCACCTCTTATAAAGAAAAGAACTTAA

mRNA sequence

ATGGATGGAATCAAATATGCAGTATTTACAGACAAAAGTATTCGGACAGAAATAAAGCATTGGGTCGAACTCTTCTTTGGTGTCAAGGTAATAGCTATGAATAGTCATCGACTCCCGGGAAAGGGTAGAAGAATGGGACCTATTATGGGACATACAATGCATTACAGACGTATGATCATTACGCTTCAACCGGGTTATTCTATTCCACCTCTTATAAAGAAAAGAACTTAA

Coding sequence (CDS)

ATGGATGGAATCAAATATGCAGTATTTACAGACAAAAGTATTCGGACAGAAATAAAGCATTGGGTCGAACTCTTCTTTGGTGTCAAGGTAATAGCTATGAATAGTCATCGACTCCCGGGAAAGGGTAGAAGAATGGGACCTATTATGGGACATACAATGCATTACAGACGTATGATCATTACGCTTCAACCGGGTTATTCTATTCCACCTCTTATAAAGAAAAGAACTTAA

Protein sequence

MDGIKYAVFTDKSIRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLIKKRT

Homology

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BLAST of IVF0015997 vs. ExPASy Swiss-Prot
Match: A0A378 (50S ribosomal protein L23, chloroplastic OS=Coffea arabica OX=13443 GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 2.7e-35
Identity = 75/93 (80.65%), Postives = 75/93 (80.65%), Query Frame = 0


Query: 1  MDGIKYAVFTDKSI-----------------RTEIKHWVELFFGVKVIAMNSHRLPGKGR 60
          MDGIKYAVFTDKSI                 RTEIKHWVELFFGVKVIAMNSHRLPGKGR
Sbjct: 1  MDGIKYAVFTDKSIRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR 60

Query: 61 RMGPIMGHTMHYRRMIITLQPGYSIPPLIKKRT 77
          RMGPIMGHTMHYRRMIITLQPGYSIPPL KKRT
Sbjct: 61 RMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT 93

[Close]

BLAST of IVF0015997 vs. ExPASy Swiss-Prot
Match: Q4VZK6 (50S ribosomal protein L23, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 2.7e-35
Identity = 75/93 (80.65%), Postives = 75/93 (80.65%), Query Frame = 0


Query: 1  MDGIKYAVFTDKSI-----------------RTEIKHWVELFFGVKVIAMNSHRLPGKGR 60
          MDGIKYAVFTDKSI                 RTEIKHWVELFFGVKVIAMNSHRLPGKGR
Sbjct: 1  MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR 60

Query: 61 RMGPIMGHTMHYRRMIITLQPGYSIPPLIKKRT 77
          RMGPIMGHTMHYRRMIITLQPGYSIPPL KKRT
Sbjct: 61 RMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT 93

[Close]

BLAST of IVF0015997 vs. ExPASy Swiss-Prot
Match: Q09FP7 (50S ribosomal protein L23, chloroplastic OS=Nandina domestica OX=41776 GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 2.7e-35
Identity = 75/93 (80.65%), Postives = 75/93 (80.65%), Query Frame = 0


Query: 1  MDGIKYAVFTDKSI-----------------RTEIKHWVELFFGVKVIAMNSHRLPGKGR 60
          MDGIKYAVFTDKSI                 RTEIKHWVELFFGVKVIAMNSHRLPGKGR
Sbjct: 1  MDGIKYAVFTDKSIRLLGNNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR 60

Query: 61 RMGPIMGHTMHYRRMIITLQPGYSIPPLIKKRT 77
          RMGPIMGHTMHYRRMIITLQPGYSIPPL KKRT
Sbjct: 61 RMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT 93

[Close]

BLAST of IVF0015997 vs. ExPASy Swiss-Prot
Match: Q0ZIV5 (50S ribosomal protein L23, chloroplastic OS=Vitis vinifera OX=29760 GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 2.7e-35
Identity = 75/93 (80.65%), Postives = 75/93 (80.65%), Query Frame = 0


Query: 1  MDGIKYAVFTDKSI-----------------RTEIKHWVELFFGVKVIAMNSHRLPGKGR 60
          MDGIKYAVFTDKSI                 RTEIKHWVELFFGVKVIAMNSHRLPGKGR
Sbjct: 1  MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR 60

Query: 61 RMGPIMGHTMHYRRMIITLQPGYSIPPLIKKRT 77
          RMGPIMGHTMHYRRMIITLQPGYSIPPL KKRT
Sbjct: 61 RMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT 93

[Close]

BLAST of IVF0015997 vs. ExPASy Swiss-Prot
Match: Q06GT3 (50S ribosomal protein L23, chloroplastic OS=Drimys granadensis OX=224735 GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 3.6e-35
Identity = 74/93 (79.57%), Postives = 76/93 (81.72%), Query Frame = 0


Query: 1  MDGIKYAVFTDKSI-----------------RTEIKHWVELFFGVKVIAMNSHRLPGKGR 60
          MDGIKYAVFT+KSI                 RTEIKHWVELFFGVKVIAMNSHRLPGKGR
Sbjct: 1  MDGIKYAVFTEKSIRLLGNNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR 60

Query: 61 RMGPIMGHTMHYRRMIITLQPGYSIPPLIKKRT 77
          RMGPIMGHTMHYRRMIITLQPGYSIPPLI+KRT
Sbjct: 61 RMGPIMGHTMHYRRMIITLQPGYSIPPLIEKRT 93

[Close]

BLAST of IVF0015997 vs. ExPASy TrEMBL
Match: A0A1V0J454 (50S ribosomal protein L23, chloroplastic OS=Chamaebatiaria millefolium OX=32222 GN=rpl23 PE=3 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.6e-33
Identity = 76/93 (81.72%), Postives = 76/93 (81.72%), Query Frame = 0


Query: 1  MDGIKYAVFTDKSI-----------------RTEIKHWVELFFGVKVIAMNSHRLPGKGR 60
          MDGIKYAVFTDKSI                 RTEIKHWVELFFGVKVIAMNSHRLPGKGR
Sbjct: 1  MDGIKYAVFTDKSIRLLLKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR 60

Query: 61 RMGPIMGHTMHYRRMIITLQPGYSIPPLIKKRT 77
          RMGPIMGHTMHYRRMIITLQPGYSIPPLIKKRT
Sbjct: 61 RMGPIMGHTMHYRRMIITLQPGYSIPPLIKKRT 93

[Close]

BLAST of IVF0015997 vs. ExPASy TrEMBL
Match: A0A1V0IJF5 (50S ribosomal protein L23, chloroplastic OS=Sorbaria sorbifolia OX=141005 GN=rpl23 PE=3 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.6e-33
Identity = 76/93 (81.72%), Postives = 76/93 (81.72%), Query Frame = 0


Query: 1  MDGIKYAVFTDKSI-----------------RTEIKHWVELFFGVKVIAMNSHRLPGKGR 60
          MDGIKYAVFTDKSI                 RTEIKHWVELFFGVKVIAMNSHRLPGKGR
Sbjct: 1  MDGIKYAVFTDKSIRLLLKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR 60

Query: 61 RMGPIMGHTMHYRRMIITLQPGYSIPPLIKKRT 77
          RMGPIMGHTMHYRRMIITLQPGYSIPPLIKKRT
Sbjct: 61 RMGPIMGHTMHYRRMIITLQPGYSIPPLIKKRT 93

[Close]

BLAST of IVF0015997 vs. ExPASy TrEMBL
Match: A0A1S6EHU6 (50S ribosomal protein L23, chloroplastic OS=Adenostoma fasciculatum OX=140993 GN=rpl23 PE=3 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.6e-33
Identity = 76/93 (81.72%), Postives = 76/93 (81.72%), Query Frame = 0


Query: 1  MDGIKYAVFTDKSI-----------------RTEIKHWVELFFGVKVIAMNSHRLPGKGR 60
          MDGIKYAVFTDKSI                 RTEIKHWVELFFGVKVIAMNSHRLPGKGR
Sbjct: 1  MDGIKYAVFTDKSIRLLLKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR 60

Query: 61 RMGPIMGHTMHYRRMIITLQPGYSIPPLIKKRT 77
          RMGPIMGHTMHYRRMIITLQPGYSIPPLIKKRT
Sbjct: 61 RMGPIMGHTMHYRRMIITLQPGYSIPPLIKKRT 93

[Close]

BLAST of IVF0015997 vs. ExPASy TrEMBL
Match: A0A411GT17 (50S ribosomal protein L23, chloroplastic OS=Cephalanthera damasonium OX=78719 GN=rpl23 PE=3 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 7.7e-33
Identity = 74/93 (79.57%), Postives = 76/93 (81.72%), Query Frame = 0


Query: 1  MDGIKYAVFTDKSI-----------------RTEIKHWVELFFGVKVIAMNSHRLPGKGR 60
          MDGIKYAVFT+KS+                 RTEIKHWVELFFGVKVIAMNSHRLPGKGR
Sbjct: 1  MDGIKYAVFTEKSLRLLGNNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR 60

Query: 61 RMGPIMGHTMHYRRMIITLQPGYSIPPLIKKRT 77
          RMGPIMGHTMHYRRMIITLQPGYSIPPLIKKRT
Sbjct: 61 RMGPIMGHTMHYRRMIITLQPGYSIPPLIKKRT 93

[Close]

BLAST of IVF0015997 vs. ExPASy TrEMBL
Match: A0A411GT83 (50S ribosomal protein L23, chloroplastic OS=Cephalanthera longibracteata OX=428214 GN=rpl23 PE=3 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 7.7e-33
Identity = 74/93 (79.57%), Postives = 76/93 (81.72%), Query Frame = 0


Query: 1  MDGIKYAVFTDKSI-----------------RTEIKHWVELFFGVKVIAMNSHRLPGKGR 60
          MDGIKYAVFT+KS+                 RTEIKHWVELFFGVKVIAMNSHRLPGKGR
Sbjct: 1  MDGIKYAVFTEKSLRLLGNNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR 60

Query: 61 RMGPIMGHTMHYRRMIITLQPGYSIPPLIKKRT 77
          RMGPIMGHTMHYRRMIITLQPGYSIPPLIKKRT
Sbjct: 61 RMGPIMGHTMHYRRMIITLQPGYSIPPLIKKRT 93

[Close]

BLAST of IVF0015997 vs. NCBI nr
Match: AQR56736.1 (ribosomal protein L23 [Adenostoma fasciculatum] >ARC96615.1 ribosomal protein L23 [Sorbaria sorbifolia] >ARD03501.1 ribosomal protein L23 [Chamaebatiaria millefolium] >QRH19241.1 ribosomal protein L23 [Sorbaria arborea] >QRH19260.1 ribosomal protein L23 [Sorbaria arborea])

HSP 1 Score: 152 bits (383), Expect = 5.02e-46
Identity = 76/93 (81.72%), Postives = 76/93 (81.72%), Query Frame = 0


Query: 1  MDGIKYAVFTDKSIR-----------------TEIKHWVELFFGVKVIAMNSHRLPGKGR 60
          MDGIKYAVFTDKSIR                 TEIKHWVELFFGVKVIAMNSHRLPGKGR
Sbjct: 1  MDGIKYAVFTDKSIRLLLKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR 60

Query: 61 RMGPIMGHTMHYRRMIITLQPGYSIPPLIKKRT 76
          RMGPIMGHTMHYRRMIITLQPGYSIPPLIKKRT
Sbjct: 61 RMGPIMGHTMHYRRMIITLQPGYSIPPLIKKRT 93

[Close]

BLAST of IVF0015997 vs. NCBI nr
Match: YP_009269533.1 (ribosomal protein L23 [Aphyllorchis montana] >YP_009269604.1 ribosomal protein L23 [Cephalanthera longifolia] >YP_009269623.1 ribosomal protein L23 [Cephalanthera longifolia] >YP_009269690.1 ribosomal protein L23 [Epipactis mairei] >YP_009269709.1 ribosomal protein L23 [Epipactis mairei] >YP_009269770.1 ribosomal protein L23 [Cephalanthera humilis] >YP_009269782.1 ribosomal protein L23 [Cephalanthera humilis] >YP_009269886.1 ribosomal protein L23 [Epipactis veratrifolia] >YP_009269907.1 ribosomal protein L23 [Epipactis veratrifolia] >YP_009270174.1 ribosomal protein L23 [Neottia ovata] >YP_009270195.1 ribosomal protein L23 [Neottia ovata] >YP_009565565.1 ribosomal protein L23 [Cephalanthera damasonium] >YP_009565584.1 ribosomal protein L23 [Cephalanthera damasonium] >YP_009565651.1 ribosomal protein L23 [Cephalanthera longibracteata] >YP_009565670.1 ribosomal protein L23 [Cephalanthera longibracteata] >YP_009565737.1 ribosomal protein L23 [Cephalanthera rubra] >YP_009565756.1 ribosomal protein L23 [Cephalanthera rubra] >YP_009565823.1 ribosomal protein L23 [Epipactis albensis] >YP_009565844.1 ribosomal protein L23 [Epipactis albensis] >YP_009565911.1 ribosomal protein L23 [Epipactis atrorubens] >YP_009565932.1 ribosomal protein L23 [Epipactis atrorubens] >YP_009565999.1 ribosomal protein L23 [Epipactis gigantea] >YP_009566020.1 ribosomal protein L23 [Epipactis gigantea] >YP_009566087.1 ribosomal protein L23 [Epipactis helleborine] >YP_009566108.1 ribosomal protein L23 [Epipactis helleborine] >YP_009566175.1 ribosomal protein L23 [Epipactis microphylla] >YP_009566196.1 ribosomal protein L23 [Epipactis microphylla] >YP_009566263.1 ribosomal protein L23 [Epipactis palustris] >YP_009566284.1 ribosomal protein L23 [Epipactis palustris] >YP_009566351.1 ribosomal protein L23 [Epipactis purpurata] >YP_009566372.1 ribosomal protein L23 [Epipactis purpurata] >YP_009566436.1 ribosomal protein L23 [Neottia cordata] >YP_009566452.1 ribosomal protein L23 [Neottia cordata] >YP_009574502.1 ribosomal protein L23 [Neottia japonica] >YP_009574521.1 ribosomal protein L23 [Neottia japonica] >YP_009574588.1 ribosomal protein L23 [Neottia suzukii] >YP_009574605.1 ribosomal protein L23 [Neottia suzukii] >YP_009749139.1 ribosomal protein L23 [Epipactis thunbergii] >YP_009749158.1 ribosomal protein L23 [Epipactis thunbergii] >QYJ54878.1 ribosomal protein L23 [Diplandrorchis sinica] >ANT72442.1 ribosomal protein L23 [Aphyllorchis montana] >ANT72512.1 ribosomal protein L23 [Cephalanthera longifolia] >ANT72531.1 ribosomal protein L23 [Cephalanthera longifolia] >ANT72600.1 ribosomal protein L23 [Epipactis mairei])

HSP 1 Score: 149 bits (377), Expect = 4.13e-45
Identity = 74/93 (79.57%), Postives = 76/93 (81.72%), Query Frame = 0


Query: 1  MDGIKYAVFTDKSIR-----------------TEIKHWVELFFGVKVIAMNSHRLPGKGR 60
          MDGIKYAVFT+KS+R                 TEIKHWVELFFGVKVIAMNSHRLPGKGR
Sbjct: 1  MDGIKYAVFTEKSLRLLGNNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR 60

Query: 61 RMGPIMGHTMHYRRMIITLQPGYSIPPLIKKRT 76
          RMGPIMGHTMHYRRMIITLQPGYSIPPLIKKRT
Sbjct: 61 RMGPIMGHTMHYRRMIITLQPGYSIPPLIKKRT 93

[Close]

BLAST of IVF0015997 vs. NCBI nr
Match: YP_002836133.1 (ribosomal protein L23 [Megaleranthis saniculifolia] >YP_002836152.1 ribosomal protein L23 [Megaleranthis saniculifolia] >YP_004563910.1 ribosomal protein L23 [Nelumbo lutea] >YP_004563929.1 ribosomal protein L23 [Nelumbo lutea] >YP_009093992.1 ribosomal protein L23 [Nelumbo nucifera] >YP_009094011.1 ribosomal protein L23 [Nelumbo nucifera] >YP_009169395.1 ribosomal protein L23 [Clematis terniflora] >YP_009169413.1 ribosomal protein L23 [Clematis terniflora] >YP_009234598.1 ribosomal protein L23 [Euptelea pleiosperma] >YP_009234617.1 ribosomal protein L23 [Euptelea pleiosperma] >YP_009243073.1 ribosomal protein L23 [Aconitum chiisanense] >YP_009243093.1 ribosomal protein L23 [Aconitum chiisanense] >YP_009251412.1 ribosomal protein L23 [Gymnospermium microrrhynchum] >YP_009251432.1 ribosomal protein L23 [Gymnospermium microrrhynchum] >YP_009271081.1 ribosomal protein L23 [Aconitum carmichaelii] >YP_009271100.1 ribosomal protein L23 [Aconitum carmichaelii] >YP_009308121.1 ribosomal protein L23 [Aconitum austrokoreense] >YP_009308141.1 ribosomal protein L23 [Aconitum austrokoreense] >YP_009308518.1 ribosomal protein L23 [Aconitum ciliare] >YP_009308538.1 ribosomal protein L23 [Aconitum ciliare] >YP_009308604.1 ribosomal protein L23 [Aconitum coreanum] >YP_009308624.1 ribosomal protein L23 [Aconitum coreanum] >YP_009308689.1 ribosomal protein L23 [Aconitum kusnezoffii] >YP_009308709.1 ribosomal protein L23 [Aconitum kusnezoffii] >YP_009308774.1 ribosomal protein L23 [Aconitum monanthum] >YP_009308794.1 ribosomal protein L23 [Aconitum monanthum] >YP_009317842.1 ribosomal protein L23 [Trollius chinensis] >YP_009317861.1 ribosomal protein L23 [Trollius chinensis] >YP_009338203.1 ribosomal protein L23 [Gymnaconitum gymnandrum] >YP_009338221.1 ribosomal protein L23 [Gymnaconitum gymnandrum] >YP_009428663.1 ribosomal protein L23 [Aconitum longecassidatum] >YP_009428685.1 ribosomal protein L23 [Aconitum longecassidatum] >YP_009428750.1 ribosomal protein L23 [Aconitum pseudolaeve] >YP_009428772.1 ribosomal protein L23 [Aconitum pseudolaeve] >YP_009428838.1 ribosomal protein L23 [Decaisnea insignis] >YP_009428857.1 ribosomal protein L23 [Decaisnea insignis] >YP_009443651.1 ribosomal protein L23 [Aconitum angustius] >YP_009443669.1 ribosomal protein L23 [Aconitum angustius] >YP_009443733.1 ribosomal protein L23 [Aconitum finetianum] >YP_009443751.1 ribosomal protein L23 [Aconitum finetianum] >YP_009443815.1 ribosomal protein L23 [Aconitum sinomontanum] >YP_009443833.1 ribosomal protein L23 [Aconitum sinomontanum] >YP_009446114.1 ribosomal protein L23 [Coptis chinensis] >YP_009446132.1 ribosomal protein L23 [Coptis chinensis] >YP_009469482.1 ribosomal protein L23 [Anemoclema glaucifolium] >YP_009469503.1 ribosomal protein L23 [Anemoclema glaucifolium] >YP_009486254.1 ribosomal protein L23 [Coptis quinquesecta] >YP_009486273.1 ribosomal protein L23 [Coptis quinquesecta] >YP_009499801.1 ribosomal protein L23 [Aconitum vilmorinianum] >YP_009499821.1 ribosomal protein L23 [Aconitum vilmorinianum] >YP_009499886.1 ribosomal protein L23 [Aconitum hemsleyanum] >YP_009499906.1 ribosomal protein L23 [Aconitum hemsleyanum] >YP_009499971.1 ribosomal protein L23 [Aconitum episcopale] >YP_009499991.1 ribosomal protein L23 [Aconitum episcopale] >YP_009500056.1 ribosomal protein L23 [Aconitum delavayi] >YP_009500076.1 ribosomal protein L23 [Aconitum delavayi] >YP_009500141.1 ribosomal protein L23 [Aconitum contortum] >YP_009500161.1 ribosomal protein L23 [Aconitum contortum] >YP_009517947.1 ribosomal protein L23 [Anemone trullifolia] >YP_009517966.1 ribosomal protein L23 [Anemone trullifolia] >YP_009518705.1 ribosomal protein L23 [Anemone henryi] >YP_009518724.1 ribosomal protein L23 [Anemone henryi] >YP_009519960.1 ribosomal protein L23 [Naravelia pilulifera] >YP_009519979.1 ribosomal protein L23 [Naravelia pilulifera] >YP_009521698.1 ribosomal protein L23 [Clematis alternata] >YP_009521717.1 ribosomal protein L23 [Clematis alternata] >YP_009521788.1 ribosomal protein L23 [Clematis repens] >YP_009521807.1 ribosomal protein L23 [Clematis repens] >YP_009521878.1 ribosomal protein L23 [Clematis brevicaudata] >YP_009521896.1 ribosomal protein L23 [Clematis brevicaudata] >YP_009521968.1 ribosomal protein L23 [Naravelia zeylanica] >YP_009521987.1 ribosomal protein L23 [Naravelia zeylanica] >YP_009527356.1 ribosomal protein L23 [Ranzania japonica] >YP_009527373.1 ribosomal protein L23 [Ranzania japonica] >YP_009528046.1 ribosomal protein L23 [Clematis loureiroana] >YP_009528065.1 ribosomal protein L23 [Clematis loureiroana] >YP_009536934.1 ribosomal protein L23 [Clematis acerifolia] >YP_009536953.1 ribosomal protein L23 [Clematis acerifolia] >YP_009537025.1 ribosomal protein L23 [Clematis heracleifolia] >YP_009537043.1 ribosomal protein L23 [Clematis heracleifolia] >YP_009537115.1 ribosomal protein L23 [Clematis uncinata] >YP_009537133.1 ribosomal protein L23 [Clematis uncinata] >YP_009576726.1 ribosomal protein L23 [Adonis sutchuenensis] >YP_009576744.1 ribosomal protein L23 [Adonis sutchuenensis] >YP_009576810.1 ribosomal protein L23 [Calathodes oxycarpa] >YP_009576829.1 ribosomal protein L23 [Calathodes oxycarpa] >YP_009576893.1 ribosomal protein L23 [Callianthemum taipaicum] >YP_009576912.1 ribosomal protein L23 [Callianthemum taipaicum] >YP_009576977.1 ribosomal protein L23 [Clematis macropetala] >YP_009576995.1 ribosomal protein L23 [Clematis macropetala] >YP_009577846.1 ribosomal protein L23 [Sinofranchetia chinensis] >YP_009577865.1 ribosomal protein L23 [Sinofranchetia chinensis] >YP_009580479.1 ribosomal protein L23 [Actaea asiatica] >YP_009580497.1 ribosomal protein L23 [Actaea asiatica] >YP_009580652.1 ribosomal protein L23 [Anemonopsis macrophylla] >YP_009580670.1 ribosomal protein L23 [Anemonopsis macrophylla] >YP_009580990.1 ribosomal protein L23 [Beesia calthifolia] >YP_009581008.1 ribosomal protein L23 [Beesia calthifolia] >YP_009581073.1 ribosomal protein L23 [Caltha palustris] >YP_009581092.1 ribosomal protein L23 [Caltha palustris] >YP_009581158.1 ribosomal protein L23 [Actaea dahurica] >YP_009581176.1 ribosomal protein L23 [Actaea dahurica] >YP_009581240.1 ribosomal protein L23 [Consolida ajacis] >YP_009581258.1 ribosomal protein L23 [Consolida ajacis] >YP_009581404.1 ribosomal protein L23 [Eranthis stellata] >YP_009581422.1 ribosomal protein L23 [Eranthis stellata] >YP_009581570.1 ribosomal protein L23 [Oxygraphis glacialis] >YP_009581589.1 ribosomal protein L23 [Oxygraphis glacialis] >YP_009581654.1 ribosomal protein L23 [Glaucidium palmatum] >YP_009581673.1 ribosomal protein L23 [Glaucidium palmatum] >YP_009581984.1 ribosomal protein L23 [Actaea vaginata] >YP_009582002.1 ribosomal protein L23 [Actaea vaginata] >YP_009584338.1 ribosomal protein L23 [Aconitum brachypodum] >YP_009584358.1 ribosomal protein L23 [Aconitum brachypodum] >YP_009590366.1 ribosomal protein L23 [Gymnospermium kiangnanense] >YP_009590386.1 ribosomal protein L23 [Gymnospermium kiangnanense] >YP_009631019.1 ribosomal protein L23 [Caulophyllum robustum] >YP_009631038.1 ribosomal protein L23 [Caulophyllum robustum] >YP_009633002.1 ribosomal protein L23 [Actaea heracleifolia] >YP_009633021.1 ribosomal protein L23 [Actaea heracleifolia] >YP_009642099.1 ribosomal protein L23 [Leontice armeniaca] >YP_009642118.1 ribosomal protein L23 [Leontice armeniaca] >YP_009654249.1 ribosomal protein L23 [Clematis brachyura] >YP_009654268.1 ribosomal protein L23 [Clematis brachyura] >YP_009671740.1 ribosomal protein L23 [Clematis trichotoma] >YP_009671759.1 ribosomal protein L23 [Clematis trichotoma] >YP_009676982.1 ribosomal protein L23 [Leontice incerta] >YP_009677001.1 ribosomal protein L23 [Leontice incerta] >YP_009727534.1 ribosomal protein L23 [Anemone hepatica var. japonica] >YP_009727552.1 ribosomal protein L23 [Anemone hepatica var. japonica] >YP_009727623.1 ribosomal protein L23 [Anemone narcissiflora] >YP_009727641.1 ribosomal protein L23 [Anemone narcissiflora] >YP_009728950.1 ribosomal protein L23 [Anemone maxima] >YP_009728968.1 ribosomal protein L23 [Anemone maxima] >YP_009729038.1 ribosomal protein L23 [Anemone hepatica var. asiatica] >YP_009729056.1 ribosomal protein L23 [Anemone hepatica var. asiatica] >YP_009763512.1 ribosomal protein L23 [Consolida orientalis] >YP_009763530.1 ribosomal protein L23 [Consolida orientalis] >YP_009763595.1 ribosomal protein L23 [Delphinium maackianum] >YP_009763613.1 ribosomal protein L23 [Delphinium maackianum] >YP_009763678.1 ribosomal protein L23 [Staphisagria macrosperma] >YP_009763696.1 ribosomal protein L23 [Staphisagria macrosperma] >YP_009906218.1 ribosomal protein L23 [Delphinium grandiflorum] >YP_009906236.1 ribosomal protein L23 [Delphinium grandiflorum] >YP_009922125.1 ribosomal protein L23 [Clematis guniuensis] >YP_009922143.1 ribosomal protein L23 [Clematis guniuensis] >YP_009926908.1 ribosomal protein L23 [Aconitum tanguticum] >YP_009926929.1 ribosomal protein L23 [Aconitum tanguticum] >YP_009936797.1 ribosomal protein L23 [Trollius farreri] >YP_009936816.1 ribosomal protein L23 [Trollius farreri] >YP_009936882.1 ribosomal protein L23 [Anemone taipaiensis] >YP_009936901.1 ribosomal protein L23 [Anemone taipaiensis] >YP_009948169.1 ribosomal protein L23 [Delphinium brunonianum] >YP_009948190.1 ribosomal protein L23 [Delphinium brunonianum] >YP_010031185.1 ribosomal protein L23 [Aconitum pendulum] >YP_010031205.1 ribosomal protein L23 [Aconitum pendulum] >YP_010046902.1 ribosomal protein L23 [Coptis japonica] >YP_010046922.1 ribosomal protein L23 [Coptis japonica] >YP_010046987.1 ribosomal protein L23 [Coptis omeiensis] >YP_010047007.1 ribosomal protein L23 [Coptis omeiensis] >YP_010047073.1 ribosomal protein L23 [Coptis teeta] >YP_010047093.1 ribosomal protein L23 [Coptis teeta] >YP_010047289.1 ribosomal protein L23 [Clematis taeguensis] >YP_010047360.1 ribosomal protein L23 [Clematis taeguensis] >YP_010127537.1 ribosomal protein L23 [Aconitum flavum] >YP_010127556.1 ribosomal protein L23 [Aconitum flavum] >YP_010129653.1 50S ribosomal protein L23 [Delphinium yunnanense] >YP_010129673.1 50S ribosomal protein L23 [Delphinium yunnanense] >YP_010131221.1 ribosomal protein L23 [Adonis amurensis] >YP_010131239.1 ribosomal protein L23 [Adonis amurensis] >YP_740693.1 ribosomal protein L23 [Nandina domestica] >YP_740714.1 ribosomal protein L23 [Nandina domestica] >Q09FP7.1 RecName: Full=50S ribosomal protein L23, chloroplastic [Nandina domestica] >AGN74020.1 ribosomal protein L23 [Aconitum barbatum var. puberulum] >AIZ57570.1 ribosomal protein L23 [Clematis fusca var. coreana] >ANY59848.1 ribosomal protein L23 [Aconitum volubile] >AOS85793.1 ribosomal protein L23 [Aconitum barbatum var. hispidum] >AOS86050.1 ribosomal protein L23 [Aconitum jaluense subsp. jaluense] >AOS86220.1 ribosomal protein L23 [Aconitum japonicum subsp. napiforme] >AUB29914.1 ribosomal protein L23 [Aconitum reclinatum] >QCB91402.1 ribosomal protein L23 [Coptis chinensis var. brevisepala] >QFV17333.1 ribosomal protein L23 [Clematis tangutica] >QFV17424.1 ribosomal protein L23 [Trollius ranunculoides] >QFV18271.1 ribosomal protein L23 [Halerpestes sarmentosa] >QFV18523.1 ribosomal protein L23 [Delphinium ceratophorum] >QFV18606.1 ribosomal protein L23 [Delphinium anthriscifolium] >QFV18863.1 ribosomal protein L23 [Ceratocephala falcata] >QFV19031.1 ribosomal protein L23 [Callianthemum alatavicum] >QFV19284.1 ribosomal protein L23 [Adonis coerulea] >QFV19368.1 ribosomal protein L23 [Aconitum barbatum] >QHD44537.1 ribosomal protein L23 [Actaea simplex] >QHD44707.1 ribosomal protein L23 [Actaea biternata] >QJS33362.1 ribosomal protein L23 [Anemone flaccida] >QKY60721.1 ribosomal protein L23 [Coptis deltoidea] >QPZ49802.1 50S ribosomal protein L23 [Delphinium candelabrum var. monanthum] >QQQ87842.1 ribosomal protein L23 [Clematis henryi var. ternata] >QRN74065.1 ribosomal protein L23 [Clematis montana] >QRV61214.1 ribosomal protein L23 [Aconitum quelpaertense] >QTI82342.1 ribosomal protein L23 [Trollius macropetalus] >QWV61654.1 ribosomal protein L23 [Clematis fruticosa] >QYK19378.1 ribosomal protein L23 [Aconitum puchonroenicum] >QYK19679.1 ribosomal protein L23 [Beesia deltophylla] >QZH79351.1 ribosomal protein L23 [Clematis chinensis])

HSP 1 Score: 149 bits (376), Expect = 5.87e-45
Identity = 75/93 (80.65%), Postives = 75/93 (80.65%), Query Frame = 0


Query: 1  MDGIKYAVFTDKSIR-----------------TEIKHWVELFFGVKVIAMNSHRLPGKGR 60
          MDGIKYAVFTDKSIR                 TEIKHWVELFFGVKVIAMNSHRLPGKGR
Sbjct: 1  MDGIKYAVFTDKSIRLLGNNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR 60

Query: 61 RMGPIMGHTMHYRRMIITLQPGYSIPPLIKKRT 76
          RMGPIMGHTMHYRRMIITLQPGYSIPPL KKRT
Sbjct: 61 RMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT 93

[Close]

BLAST of IVF0015997 vs. NCBI nr
Match: YP_009342805.1 (ribosomal protein L23 [Lucuma campechiana] >YP_009342824.1 ribosomal protein L23 [Lucuma campechiana] >YP_009989118.1 ribosomal protein L23 [Pouteria caimito] >YP_009989140.1 ribosomal protein L23 [Pouteria caimito] >YP_010020864.1 ribosomal protein L23 [Madhuca hainanensis] >YP_010020884.1 ribosomal protein L23 [Madhuca hainanensis] >YP_010031271.1 ribosomal protein L23 [Synsepalum dulcificum] >YP_010031293.1 ribosomal protein L23 [Synsepalum dulcificum] >YP_010031359.1 ribosomal protein L23 [Chrysophyllum cainito] >YP_010031378.1 ribosomal protein L23 [Chrysophyllum cainito] >YP_010147164.1 ribosomal protein L23 [Vitellaria paradoxa] >YP_010147183.1 ribosomal protein L23 [Vitellaria paradoxa] >AWI71916.1 ribosomal protein L23 [Beaumontia murtonii] >QHN89333.1 50S ribosomal protein L23 [Manilkara zapota] >QKZ95454.1 ribosomal protein L23 [Argania spinosa] >QWY89341.1 ribosomal protein L23 [Gambeya africana] >QWY89426.1 ribosomal protein L23 [Gambeya gigantea] >QWY89511.1 ribosomal protein L23 [Gambeya lacourtiana] >QWY89596.1 ribosomal protein L23 [Gambeya subnuda] >QWY89681.1 ribosomal protein L23 [Pouteria adolfi-friedericii] >QWY89766.1 ribosomal protein L23 [Aningeria altissima] >QWY89851.1 ribosomal protein L23 [Pouteria aningeri] >QWY89936.1 ribosomal protein L23 [Autranella congolensis] >QWY90021.1 ribosomal protein L23 [Baillonella toxisperma] >QWY90106.1 ribosomal protein L23 [Tieghemella africana] >QWY90191.1 ribosomal protein L23 [Tieghemella heckelii] >QZQ53399.1 ribosomal protein L23 [Mimusops coriacea])

HSP 1 Score: 149 bits (376), Expect = 5.87e-45
Identity = 75/93 (80.65%), Postives = 75/93 (80.65%), Query Frame = 0


Query: 1  MDGIKYAVFTDKSIR-----------------TEIKHWVELFFGVKVIAMNSHRLPGKGR 60
          MDGIKYAVFTDKSIR                 TEIKHWVELFFGVKVIAMNSHRLPGKGR
Sbjct: 1  MDGIKYAVFTDKSIRLLEKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR 60

Query: 61 RMGPIMGHTMHYRRMIITLQPGYSIPPLIKKRT 76
          RMGPIMGHTMHYRRMIITLQPGYSIPPL KKRT
Sbjct: 61 RMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT 93

[Close]

BLAST of IVF0015997 vs. NCBI nr
Match: YP_009872479.1 (ribosomal protein L23 [Paederia scandens] >YP_009872500.1 ribosomal protein L23 [Paederia scandens] >ATL61483.1 ribosomal protein L23 [Paederia foetida] >QKT21789.1 ribosomal protein L23 [Paederia scandens] >QKT21790.1 ribosomal protein L23 [Paederia scandens])

HSP 1 Score: 149 bits (376), Expect = 5.87e-45
Identity = 75/93 (80.65%), Postives = 75/93 (80.65%), Query Frame = 0


Query: 1  MDGIKYAVFTDKSIR-----------------TEIKHWVELFFGVKVIAMNSHRLPGKGR 60
          MDGIKYAVFTDKSIR                 TEIKHWVELFFGVKVIAMNSHRLPGKGR
Sbjct: 1  MDGIKYAVFTDKSIRLLGKNQYTFNVESGPTTTEIKHWVELFFGVKVIAMNSHRLPGKGR 60

Query: 61 RMGPIMGHTMHYRRMIITLQPGYSIPPLIKKRT 76
          RMGPIMGHTMHYRRMIITLQPGYSIPPL KKRT
Sbjct: 61 RMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT 93

[Close]

BLAST of IVF0015997 vs. TAIR 10
Match: ATCG00840.1 (ribosomal protein L23.1 )

HSP 1 Score: 142.9 bits (359), Expect = 1.1e-34
Identity = 72/93 (77.42%), Postives = 74/93 (79.57%), Query Frame = 0


Query: 1  MDGIKYAVFTDKSI-----------------RTEIKHWVELFFGVKVIAMNSHRLPGKGR 60
          MDGIKYAVFTDKSI                 RTEIKHWVELFFGVKVIAMNSHRLPGK +
Sbjct: 1  MDGIKYAVFTDKSIRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKVK 60

Query: 61 RMGPIMGHTMHYRRMIITLQPGYSIPPLIKKRT 77
          RMGPI+GHTMHYRRMIITLQPGYSIPPL KKRT
Sbjct: 61 RMGPILGHTMHYRRMIITLQPGYSIPPLRKKRT 93

[Close]

BLAST of IVF0015997 vs. TAIR 10
Match: ATCG01300.1 (ribosomal protein L23 )

HSP 1 Score: 142.9 bits (359), Expect = 1.1e-34
Identity = 72/93 (77.42%), Postives = 74/93 (79.57%), Query Frame = 0


Query: 1  MDGIKYAVFTDKSI-----------------RTEIKHWVELFFGVKVIAMNSHRLPGKGR 60
          MDGIKYAVFTDKSI                 RTEIKHWVELFFGVKVIAMNSHRLPGK +
Sbjct: 1  MDGIKYAVFTDKSIRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKVK 60

Query: 61 RMGPIMGHTMHYRRMIITLQPGYSIPPLIKKRT 77
          RMGPI+GHTMHYRRMIITLQPGYSIPPL KKRT
Sbjct: 61 RMGPILGHTMHYRRMIITLQPGYSIPPLRKKRT 93

The following BLAST results are available for this feature:

BLAST of IVF0015997 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A0A378	2.7e-35	80.65	50S ribosomal protein L23, chloroplastic OS=Coffea arabica OX=13443 GN=rpl23-A P...	[more]
Q4VZK6	2.7e-35	80.65	50S ribosomal protein L23, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl23-A P...	[more]
Q09FP7	2.7e-35	80.65	50S ribosomal protein L23, chloroplastic OS=Nandina domestica OX=41776 GN=rpl23-...	[more]
Q0ZIV5	2.7e-35	80.65	50S ribosomal protein L23, chloroplastic OS=Vitis vinifera OX=29760 GN=rpl23-A P...	[more]
Q06GT3	3.6e-35	79.57	50S ribosomal protein L23, chloroplastic OS=Drimys granadensis OX=224735 GN=rpl2...	[more]

BLAST of IVF0015997 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1V0J454	1.6e-33	81.72	50S ribosomal protein L23, chloroplastic OS=Chamaebatiaria millefolium OX=32222 ...	[more]
A0A1V0IJF5	1.6e-33	81.72	50S ribosomal protein L23, chloroplastic OS=Sorbaria sorbifolia OX=141005 GN=rpl...	[more]
A0A1S6EHU6	1.6e-33	81.72	50S ribosomal protein L23, chloroplastic OS=Adenostoma fasciculatum OX=140993 GN...	[more]
A0A411GT17	7.7e-33	79.57	50S ribosomal protein L23, chloroplastic OS=Cephalanthera damasonium OX=78719 GN...	[more]
A0A411GT83	7.7e-33	79.57	50S ribosomal protein L23, chloroplastic OS=Cephalanthera longibracteata OX=4282...	[more]

BLAST of IVF0015997 vs. NCBI nr


Match Name	E-value	Identity	Description
AQR56736.1	5.02e-46	81.72	ribosomal protein L23 [Adenostoma fasciculatum] >ARC96615.1 ribosomal protein L2...	[more]
YP_009269533.1	4.13e-45	79.57	ribosomal protein L23 [Aphyllorchis montana] >YP_009269604.1 ribosomal protein L...	[more]
YP_002836133.1	5.87e-45	80.65	ribosomal protein L23 [Megaleranthis saniculifolia] >YP_002836152.1 ribosomal pr...	[more]
YP_009342805.1	5.87e-45	80.65	ribosomal protein L23 [Lucuma campechiana] >YP_009342824.1 ribosomal protein L23...	[more]
YP_009872479.1	5.87e-45	80.65	ribosomal protein L23 [Paederia scandens] >YP_009872500.1 ribosomal protein L23 ...	[more]

BLAST of IVF0015997 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00840.1	1.1e-34	77.42	ribosomal protein L23.1	[more]
ATCG01300.1	1.1e-34	77.42	ribosomal protein L23	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013025	Ribosomal protein L25/L23	PFAM	PF00276	Ribosomal_L23	coord: 14..68 e-value: 5.8E-12 score: 45.8
IPR013025	Ribosomal protein L25/L23	PANTHER	PTHR11620	60S RIBOSOMAL PROTEIN L23A	coord: 15..72
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 4..69 e-value: 1.3E-11 score: 46.7
None	No IPR available	PANTHER	PTHR11620:SF69	50S RIBOSOMAL PROTEIN L23, CHLOROPLASTIC	coord: 15..72
IPR001014	Ribosomal protein L23/L25, conserved site	PROSITE	PS00050	RIBOSOMAL_L23	coord: 56..71
IPR012678	Ribosomal protein L23/L15e core domain superfamily	SUPERFAMILY	54189	Ribosomal proteins S24e, L23 and L15e	coord: 1..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0015997.2	IVF0015997.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome