IVF0015966 (gene) Melon (IVF77) v1

Overview


Name	IVF0015966
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	RNA-binding protein BRN1
Location	chr01: 28164658 .. 28169240 (-)
RNA-Seq Expression	IVF0015966
Synteny	IVF0015966

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCCCTCAGTTTTATTTTTATATTTTTTCCCAACGAAGACTCTCCCAAGAAAAATCCAATCTCAGAGAGAGAAGTTGACGGCGAAATCTAGAGAGAGAAAGCTTCAAACCGGCATTAATGGCGGAAGGGAGTAGAGGAGGAGAGAGAAAGGAGAGTAGTAATCAGGAGGAAGAAGACAGCGTCAAACTCTTTGTTGGTCAAGTTCCAAAGCATATGACCGAACCTCAACTTCTCACAATGTTCCAAGAGTTTGCACTTGTGGATGAAGTCAACATCATCAGAGACAAAACCACTCGCGCCTCTAGAGGTGTTTTTTTTTTTTTTTTTTCCCTTTTGATTTCAATTTCAACTACTTTAGTTTGTTTTACGTTTACACTCACCTTCTCTCTGTTTTTCTTTGGTTATGTTCGCTTGCGATGATTTCTGGTTTGATTCAATTTGAGTAGAGTCTAATCATCGATTGACATTGTGAATTCATGTTTTGAACCCTAATCTTTTGTTGTTGTTTGTTGTGGTTGCTGCATTTTTCAGGTTGCTGTTTCGTGATTTGTCCTTCGAGGCAAGAGGCGGATAAGGCGGTCAATGCTTGCCATAACAAGAAAACTTTGCCTGGGGTTAGTGGAATCTGGATGTTTAAGTTGCCAATTATTAATAATTTTTATTTCTCTCTGTCTCTCTCTTCTCAATGTTTGTTTTGTTTTGTTTTTTATGTCTTTTCTTTTTTCTTGTCGATAATGCTAATCAATGCAATTGATCGATGCGATAGACTTGGCCTTGTGCGTAATTGCTGTTATCAATAACCTTGAAATTCTAAAACTCTTGGCTTTTCCGTAAAAGCTGTTTTCTAGTTTCAGACTACACCACATTGTGATACATCTTATATTTTGGACTTGAAAATGAACTAATTGAGCGCTCTACATCTCTCGTTGAAGCAACTTGGCAGACCCTCTAAGATTTCACTTCCCTCTATTTAAGGAAAAATAATTGATCTTTTCATTTTTTCTTTTACTATAATAGTTTTATTTAATTATGCTTTACGGAATCAAGCTCTTTAATTCTGAAAGATGTTATCCTTGTGATTTAGCATTGAATGCAAAGATATGGCTTTGTGATGAACAAAAGGAAAAAGAGACAACCCTTTTAGAGAAATGATTTTTACTAAATTAAGCTAGATTTCCACATCAATGAAGTGGGATCAACTTCTGATCCGAGCATTGATTTCTGATGTTATCATTTTGCTTGGAATTGGCCTGGTCTCCCGTTGAGTGATAAAAGGCGTTTTGAAGCGAAATAATGACGTATTCATTATGCGAGGAAGAATACGGGTTTCCATCGAATCTATCGATAATATATCATCGATAACCATTGATTAAATTTTTGGTGAGTTGGTTAGGAAATAATTGTAGAGTTGACTTTAGGCATTTCACGTGAAGTATATTTCTGATTCACTTGGGAGCTTCTTAATGTTTCTAAATTTATGGAATTATGGTGCAATATTTAGGAAATAGTGGTAGAGTGGACTCAAATTATTTAATTTAATTATTTTGTATTCTATTCCTAGAATTAATTTGATGAATCGTAGGTATTTTGAAATATTAAATGCATGCTTGCCGAGACATTCTTTTCTATTTTTCTTTTGCCCTTGCCATTGCACCGAACTGGATTTGATCTAGTAATGTGTCCTAACACTGCAATTGAATTTTGGAGGACCAAATCAGCACTTAGATATAGTTTATAGTCAATGAACCATACCTCTGATAAAATAGATGGCTTTTAATTTTTCCGTTAAATCTGTAATTAAACATTGTTATCGTCAAAGTGTGTAGTAATGCCTCTCATTTTCTCTTCAATCCAGGCTTCTAGTCCGTTGCAAGTTAAATATGCAGATGGCGAGCTGGAAAGACTAGGTTTAATATCATTCCCTGCTTGAATATCTCATCTAAAAGATGGTTCCTAACATCCATGAATCTACATTGCTACTTTCTTAATGATCTTGTATTTATCTTCCTGAAAGATTAATATTTAGTTTGTATGGATAGTAATGGTTGGTTATTTCTGAAAAGAGCAGAACACAAACTCTTTATTGGAATGCTTCCGAAAAATGTATCCGAAGATGAAGTTTCTGGTCTTTTCTCTCAGTATGGAACTATAAAAGACTTGCAAATATTAAGAGGTTCACAGCAGACAAGTAAAGGTAGCTTTCGGTTTGTTTCAGCTTGATTTAGTTGAAGTTATGAAAGATATCACACATTCAGTTGAATCTTCACCATTAGCTCCATATGTTGCTCAAGTTCAGGTTGTGCATTCTTGAAGTATGAGACGAAGGATCAAGCTGTTGCAGCACTTGAGGCAATTAACGGAAAGTGTAAAATGGAGGTAATGAAATTTTCATGATATTTCCGAAAAAAGATAGGAGGTTAATACCAAAATCATTTAAATCATAGAAAGCCTTTATATTGCTGAAATCCATTTTCACCTTGTTGATATCTTGTGCCTTTGTGGGCACTTCTATTATTTCCCGACATTTTAATGACATTTCAGAAAAAAGATATTGTTTGCTCTTGTTATGTTGAACACTTTTCGTGGGTTTTATTATTATTATTATTTATTATTATTATTATTTATTATTATTTGACGTCTAAAATCCTTTTAGCTACTATATAACTGGTTGGAATTTTTTGGAAAGGATTTTTTTTAATTCAAGTCAAATTAGCCAGTCAAATTCAATGTACTCAACAGTTGAGTCTTCTTGCACAAGCCGACGTCATTTTAGGGCTGACATATTATGAAAATTCTAGCTCCCTGTAAGTAGGATAGTCTGTCTTATACTCATATCCTTTACCCCACTGAAAGTATGGAAGACTATTAATTTATACATACAGACATATGTTTACGGAGGCATCATGTATTTGATTGTTTCCCCTACTCAGGGATCCAGTGTCCCTTTGGTTGTTAAATGGGCCGACACAGAGAAGGAAAGGCAAGCTCGGAAAGCTCAGAAAGCTCAATCACAGGCCACTAATGTGCTTAATGCAGACTCCCAGCATCCTTCACTGTTTGGAGCCATGCCACTGGGTTATGTTCCACCATATAACGGCTATGGTTATCAGGTCAGTTTTGCAGGGGATTGTTCTTAGGGTTCTTCAATTTGTATGTTTGTATGTGGCATTTCCAAGGATTTTTTTTCCTCTCTTTTTATTTATTGCATAGGGATCTGTGTTGTCCTTGTTTTTGTACTTTTGGTTAACATGCACTTGAAAAGAACGGTTTTTGTTTGAATGGTAATGAATGTTATTAATCAGATACCTGATCCATGATCTTAATCTCGATTTCCTTTTGAATGGTTTTCATTTTTATGTTTGTAATTAAGCATTTTTATATTGAATCACGAAGGTAGCCAATGATAGTCTTTACTTTCTCTCTGTAGGCTCCTGGAAGTTATGGGCTTATGCAATATCACCTACCTCCAATGCAGAATCAATCTGGTTTTCCAAACATGATACCTCAATTAAACCAAGGTAATGCAATGCGCGGGATCCCGCCTGACCTTGGCCCAGGTATGGCCACTAGAAATTATGCCATGCCTCCTGCAAGTTACTCTGCCTATCCTGGAGTTCCAGCTCTTCAGCATCCCATGGCGTACCCTGGAGGAATGATGAGTCCAGGGTTGTGAGCAGTTCACCTGGTCCAGGGCCATTCACTGGTGGCAAGAACTCTCCAACGTCTAGTATGGGTAAAGGGTCTGGCGGTCAGATTGAAGGTAGATAGTTTTTCCCCTTTTGATCTGACCTCGATTTGCTGATTGGTTTTGAGCTTCAGGGAATTATAGTTCACGATCTTTTTTTCTCTAGGTCCACCTGGTGCTAATCTTTTTATTTATCACATACCCCAAGAATTTGGAGATCGGGAGCTTGCTAACTCTTTTAGAGCATTTGGCCGAGTTTTGAGTGCTAAAGTATTTGTTGACAAAACATCTGGAGTTAGCAAATGTTTTGGTGAGCACAGTTGATACCTCTAATGGGGGTTGAAAATTTTTCTTGCTATTTTCATGCCTGCAACTTTGTGCAAAAACAAATGTTGAAGATGAAAGTGTTTTCTGTATTTTGGTACGTGTAGATGTCTAACCATTTTTCCCTCTACAGGGTTTGTTAGTTATGATTCTGCCGAGGCTGCTCAATCTGCAATAAGTATGATGAATGGATGCCAATTAGGTGGAAAGAAATTAAAAGTCCAGCTGAAGAGAGACAACAAACAGAGTAAACCATATTGATTCGGTGTAACGTTATCGAAGGCAGCAAATTGCTACCAATTGCTGACACTGGGGAGCCTAAATACACGACAATCATTCCATTATCAGATATCTTAGGGTGGATTAGGGACTTTCTATGGTTAACTATTCATTACTCCATCCTACCTGTGATTGCATCAGATCAAATCAAACATACTTGTAATTCATGGTTCGGCCATGCTGATGCAATTTGTAATTTATGTATTTGGAAGATTAACATTCTTTAATTGATTCTTCCGGGACATCTGTTGATTGTAAAATACCATGTAATTATAAATGATCTCTTGATTCTTTT

mRNA sequence

ATCCCTCAGTTTTATTTTTATATTTTTTCCCAACGAAGACTCTCCCAAGAAAAATCCAATCTCAGAGAGAGAAGTTGACGGCGAAATCTAGAGAGAGAAAGCTTCAAACCGGCATTAATGGCGGAAGGGAGTAGAGGAGGAGAGAGAAAGGAGAGTAGTAATCAGGAGGAAGAAGACAGCGTCAAACTCTTTGTTGGTCAAGTTCCAAAGCATATGACCGAACCTCAACTTCTCACAATGTTCCAAGAGTTTGCACTTGTGGATGAAGTCAACATCATCAGAGACAAAACCACTCGCGCCTCTAGAGGTTGCTGTTTCGTGATTTGTCCTTCGAGGCAAGAGGCGGATAAGGCGGTCAATGCTTGCCATAACAAGAAAACTTTGCCTGGGGCTTCTAGTCCGTTGCAAGTTAAATATGCAGATGGCGAGCTGGAAAGACTAGAACACAAACTCTTTATTGGAATGCTTCCGAAAAATGTATCCGAAGATGAAGTTTCTGGTCTTTTCTCTCAGTATGGAACTATAAAAGACTTGCAAATATTAAGAGGTTCACAGCAGACAAGTAAAGGTTGTGCATTCTTGAAGTATGAGACGAAGGATCAAGCTGTTGCAGCACTTGAGGCAATTAACGGAAAGTGTAAAATGGAGGGATCCAGTGTCCCTTTGGTTGTTAAATGGGCCGACACAGAGAAGGAAAGGCAAGCTCGGAAAGCTCAGAAAGCTCAATCACAGGCCACTAATGTGCTTAATGCAGACTCCCAGCATCCTTCACTGTTTGGAGCCATGCCACTGGGTTATGTTCCACCATATAACGGCTATGGTTATCAGGCTCCTGGAAGTTATGGGCTTATGCAATATCACCTACCTCCAATGCAGAATCAATCTGGTTTTCCAAACATGATACCTCAATTAAACCAAGGTAATGCAATGCGCGGGATCCCGCCTGACCTTGGCCCAGGTATGGCCACTAGAAATTATGCCATGCCTCCTGCAAGTTACTCTGCCTATCCTGGAGTTCCAGCTCTTCAGCATCCCATGGCGTACCCTGGAGGAATGATGAGTCCAGGGTTGTGAGCAGTTCACCTGGTCCAGGGCCATTCACTGGTGGCAAGAACTCTCCAACGTCTAGTATGGGTAAAGGGTCTGGCGGTCAGATTGAAGGTCCACCTGGTGCTAATCTTTTTATTTATCACATACCCCAAGAATTTGGAGATCGGGAGCTTGCTAACTCTTTTAGAGCATTTGGCCGAGTTTTGAGTGCTAAAGTATTTGTTGACAAAACATCTGGAGTTAGCAAATGTTTTGGGTTTGTTAGTTATGATTCTGCCGAGGCTGCTCAATCTGCAATAAGTATGATGAATGGATGCCAATTAGGTGGAAAGAAATTAAAAGTCCAGCTGAAGAGAGACAACAAACAGAGTAAACCATATTGATTCGGTGTAACGTTATCGAAGGCAGCAAATTGCTACCAATTGCTGACACTGGGGAGCCTAAATACACGACAATCATTCCATTATCAGATATCTTAGGGTGGATTAGGGACTTTCTATGGTTAACTATTCATTACTCCATCCTACCTGTGATTGCATCAGATCAAATCAAACATACTTGTAATTCATGGTTCGGCCATGCTGATGCAATTTGTAATTTATGTATTTGGAAGATTAACATTCTTTAATTGATTCTTCCGGGACATCTGTTGATTGTAAAATACCATGTAATTATAAATGATCTCTTGATTCTTTT

Coding sequence (CDS)

ATGGCGGAAGGGAGTAGAGGAGGAGAGAGAAAGGAGAGTAGTAATCAGGAGGAAGAAGACAGCGTCAAACTCTTTGTTGGTCAAGTTCCAAAGCATATGACCGAACCTCAACTTCTCACAATGTTCCAAGAGTTTGCACTTGTGGATGAAGTCAACATCATCAGAGACAAAACCACTCGCGCCTCTAGAGGTTGCTGTTTCGTGATTTGTCCTTCGAGGCAAGAGGCGGATAAGGCGGTCAATGCTTGCCATAACAAGAAAACTTTGCCTGGGGCTTCTAGTCCGTTGCAAGTTAAATATGCAGATGGCGAGCTGGAAAGACTAGAACACAAACTCTTTATTGGAATGCTTCCGAAAAATGTATCCGAAGATGAAGTTTCTGGTCTTTTCTCTCAGTATGGAACTATAAAAGACTTGCAAATATTAAGAGGTTCACAGCAGACAAGTAAAGGTTGTGCATTCTTGAAGTATGAGACGAAGGATCAAGCTGTTGCAGCACTTGAGGCAATTAACGGAAAGTGTAAAATGGAGGGATCCAGTGTCCCTTTGGTTGTTAAATGGGCCGACACAGAGAAGGAAAGGCAAGCTCGGAAAGCTCAGAAAGCTCAATCACAGGCCACTAATGTGCTTAATGCAGACTCCCAGCATCCTTCACTGTTTGGAGCCATGCCACTGGGTTATGTTCCACCATATAACGGCTATGGTTATCAGGCTCCTGGAAGTTATGGGCTTATGCAATATCACCTACCTCCAATGCAGAATCAATCTGGTTTTCCAAACATGATACCTCAATTAAACCAAGGTAATGCAATGCGCGGGATCCCGCCTGACCTTGGCCCAGGTATGGCCACTAGAAATTATGCCATGCCTCCTGCAAGTTACTCTGCCTATCCTGGAGTTCCAGCTCTTCAGCATCCCATGGCGTACCCTGGAGGAATGATGAGTCCAGGGTTGTGA

Protein sequence

MAEGSRGGERKESSNQEEEDSVKLFVGQVPKHMTEPQLLTMFQEFALVDEVNIIRDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGKCKMEGSSVPLVVKWADTEKERQARKAQKAQSQATNVLNADSQHPSLFGAMPLGYVPPYNGYGYQAPGSYGLMQYHLPPMQNQSGFPNMIPQLNQGNAMRGIPPDLGPGMATRNYAMPPASYSAYPGVPALQHPMAYPGGMMSPGL

Homology

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BLAST of IVF0015966 vs. ExPASy Swiss-Prot
Match: Q8LFS6 (RNA-binding protein BRN1 OS=Arabidopsis thaliana OX=3702 GN=BRN1 PE=2 SV=1)

HSP 1 Score: 431.8 bits (1109), Expect = 6.7e-120
Identity = 223/316 (70.57%), Postives = 261/316 (82.59%), Query Frame = 0


Query: 9   ERKESSNQ--EEEDSVKLFVGQVPKHMTEPQLLTMFQEFALVDEVNIIRDKTTRASRGCC 68
           E KE + +  EEE+SVKLFVGQ+PKHM+E QLLT+FQEFA+VDEVNII+DK TRASRGCC
Sbjct: 3   EAKEENREKNEEEESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCC 62

Query: 69  FVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEDEV 128
           F++CPSR+EADK VNACHNKKTLPGA+S LQVKYADGELERLEHKLF+GMLPKNVSE EV
Sbjct: 63  FLLCPSREEADKLVNACHNKKTLPGANSLLQVKYADGELERLEHKLFVGMLPKNVSEAEV 122

Query: 129 SGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGKCKMEGSSVPLVVK 188
             LFS+YGTIKDLQILRG+QQTSKGCAFLKYETK+QAV+A+E+INGK KMEGS+VPLVVK
Sbjct: 123 QSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESINGKHKMEGSTVPLVVK 182

Query: 189 WADTEKERQARKAQKAQSQATNVLNADSQHPSLFGAMPLGYVPPYNGYGY-QAPGSYGLM 248
           WADTE+ER  R+ QKAQS    + N D  +PSLFGA+P+GYVPPYNGYGY Q PG+YG  
Sbjct: 183 WADTERERHTRRLQKAQSHIARLGNGDPTNPSLFGALPMGYVPPYNGYGYHQPPGTYG-- 242

Query: 249 QYHLPPMQNQSGFPNMIPQLNQG--NAMRGIPPD-LGPGMATRNYAMPPASY--SAYPGV 308
            Y LPP+QNQ+ F NMI Q NQG  NA++G  PD + P +A RN+ MPP +Y  S YP +
Sbjct: 243 -YMLPPIQNQAAFSNMIAQPNQGNNNALQGTSPDSVPPRLARRNFPMPPGNYMGSGYPAM 302

Query: 309 PALQHPMAYPGGMMSP 317
                P AYP G++SP
Sbjct: 303 RGHPFPFAYPRGIVSP 315

[Close]

BLAST of IVF0015966 vs. ExPASy Swiss-Prot
Match: Q8GZ26 (RNA-binding protein BRN2 OS=Arabidopsis thaliana OX=3702 GN=BRN2 PE=1 SV=1)

HSP 1 Score: 386.3 bits (991), Expect = 3.2e-106
Identity = 200/309 (64.72%), Postives = 241/309 (77.99%), Query Frame = 0


Query: 17  EEEDSVKLFVGQVPKHMTEPQLLTMFQEFALVDEVNIIRDKTTRASRGCCFVICPSRQEA 76
           E E+ VKLFVGQVPKHMTE QLLT+F+EF++V+EVNII++KTTRA RGCCF+ CP+R++A
Sbjct: 7   ENEERVKLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDA 66

Query: 77  DKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEDEVSGLFSQYGTI 136
           DK +N+ HNKKTLPGASSPLQVKYADGELERLEHKLF+GMLPKNVSE EV  LFS+YGTI
Sbjct: 67  DKVINSFHNKKTLPGASSPLQVKYADGELERLEHKLFVGMLPKNVSETEVQSLFSEYGTI 126

Query: 137 KDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGKCKMEGSSVPLVVKWADTEKERQA 196
           KDLQILRGS QTSKGC FLKYE+K+QAVAA+EA+NG+  MEG++VPL+VKWADTEKERQA
Sbjct: 127 KDLQILRGSLQTSKGCLFLKYESKEQAVAAMEALNGRHIMEGANVPLIVKWADTEKERQA 186

Query: 197 RKAQKAQSQATNVLNADSQHPSLFGAMPLGYVPPYNGYGYQAPGSYGLMQYHLPPMQNQS 256
           R+  K QS   +V   D Q+PS+FGA+P+ YVPPYNGYGY  PG+YG   Y LPP+Q Q 
Sbjct: 187 RRLLKVQS---HVSRLDPQNPSMFGALPMSYVPPYNGYGYHVPGTYG---YMLPPIQTQH 246

Query: 257 GFPNMI-PQLNQGNAMRG------IPPDLGPGMATRNYAMPPASYSAYPGVPALQHPMAY 316
            F N+I P    G A++G      +PP L P    RN+     +Y    G   LQ+PMA+
Sbjct: 247 AFHNVISPNQGNGRALQGTALTESVPPRLAP---RRNFPTALGNY----GYHGLQYPMAF 302

Query: 317 PGGMMSPGL 319
           P GM+ P L
Sbjct: 307 PRGMIPPRL 302

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BLAST of IVF0015966 vs. ExPASy Swiss-Prot
Match: Q6DGV1 (CUGBP Elav-like family member 4 OS=Danio rerio OX=7955 GN=celf4 PE=2 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 2.1e-41
Identity = 84/189 (44.44%), Postives = 125/189 (66.14%), Query Frame = 0


Query: 17  EEEDSVKLFVGQVPKHMTEPQLLTMFQEFALVDEVNIIRDKTTRASRGCCFVICPSRQEA 76
           ++ D++KLF+GQ+P+++ E  L  +F+EF  + E+ +++D+ T   +GC F+   +R+ A
Sbjct: 42  KDHDAIKLFIGQIPRNLDEKDLRPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCARESA 101

Query: 77  DKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEDEVSGLFSQYGTI 136
            KA  A H +KTLPG + P+QVK AD E    + KLF+GML K   ED+V  LF  +G+I
Sbjct: 102 LKAQTALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLNKQQCEDDVRRLFESFGSI 161

Query: 137 KDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGKCKMEGSSVPLVVKWADTEKERQA 196
           ++  ILRG    SKGCAF+KY T  +A AA+ A++G   M G+S  LVVK+ADT+KER  
Sbjct: 162 EECTILRGPDGNSKGCAFVKYSTHAEAQAAISALHGSQTMPGASSSLVVKFADTDKERTI 221

Query: 197 RKAQKAQSQ 206
           R+ Q+   Q
Sbjct: 222 RRMQQMAGQ 230

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BLAST of IVF0015966 vs. ExPASy Swiss-Prot
Match: A0JM51 (CUGBP Elav-like family member 5 OS=Xenopus tropicalis OX=8364 GN=celf5 PE=2 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 3.7e-41
Identity = 82/195 (42.05%), Postives = 132/195 (67.69%), Query Frame = 0


Query: 11  KESSNQEEEDSVKLFVGQVPKHMTEPQLLTMFQEFALVDEVNIIRDKTTRASRGCCFVIC 70
           ++S + ++ D++KLFVGQ+P+++ E  L  +F++F  + E+ +++D+ T   +GC F+  
Sbjct: 36  QQSDSMKDLDAIKLFVGQIPRNLEEKDLKPLFEQFGKIYELTVLKDRYTGMHKGCAFLTY 95

Query: 71  PSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEDEVSGLF 130
            +R  A KA  A H +KTLPG + P+QVK AD E    + KLF+GML K  SE+EV+ +F
Sbjct: 96  CARDSAIKAQTALHEQKTLPGMARPIQVKPADSESRGGDRKLFVGMLSKQQSEEEVTSMF 155

Query: 131 SQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGKCKMEGSSVPLVVKWADT 190
             +G+I++  +LRG   +SKGCAF+K+ +  +A AA++A++G   M G+S  LVVK+ADT
Sbjct: 156 QAFGSIEECSVLRGPDGSSKGCAFVKFSSHAEAQAAIQALHGSQTMPGASSSLVVKFADT 215

Query: 191 EKERQARKAQKAQSQ 206
           +KER  R+ Q+   Q
Sbjct: 216 DKERTLRRMQQMVGQ 230

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BLAST of IVF0015966 vs. ExPASy Swiss-Prot
Match: Q91579 (CUGBP Elav-like family member 3-A OS=Xenopus laevis OX=8355 GN=tnrc4-a PE=2 SV=2)

HSP 1 Score: 169.9 bits (429), Expect = 4.8e-41
Identity = 82/189 (43.39%), Postives = 128/189 (67.72%), Query Frame = 0


Query: 17  EEEDSVKLFVGQVPKHMTEPQLLTMFQEFALVDEVNIIRDKTTRASRGCCFVICPSRQEA 76
           +E D++KLF+GQ+P+++ E  L  +F++F  + E+ +I+DK T   +GC F+   +R+ A
Sbjct: 2   KEPDAIKLFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARESA 61

Query: 77  DKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEDEVSGLFSQYGTI 136
            KA +A H +KTLPG + P+QVK AD E    + KLF+GML K  ++++V  +F  +G I
Sbjct: 62  LKAQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRRMFEPFGNI 121

Query: 137 KDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGKCKMEGSSVPLVVKWADTEKERQA 196
            +  +LRG   TSKGCAF+K++T  +A AA+ A++G   + G+S  LVVK+ADTEKER  
Sbjct: 122 DECTVLRGPDGTSKGCAFVKFQTHTEAQAAINALHGSRTLPGASSSLVVKFADTEKERGL 181

Query: 197 RKAQKAQSQ 206
           R+ Q+  +Q
Sbjct: 182 RRMQQVANQ 190

[Close]

BLAST of IVF0015966 vs. ExPASy TrEMBL
Match: A0A0A0K5R5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G390170 PE=4 SV=1)

HSP 1 Score: 638.3 bits (1645), Expect = 1.8e-179
Identity = 317/318 (99.69%), Postives = 318/318 (100.00%), Query Frame = 0


Query: 1   MAEGSRGGERKESSNQEEEDSVKLFVGQVPKHMTEPQLLTMFQEFALVDEVNIIRDKTTR 60
           MAEGSRGGERKESSNQEEEDSVKLFVGQVPKHMTEPQLLTMFQEFALVDEVNIIRDKTTR
Sbjct: 1   MAEGSRGGERKESSNQEEEDSVKLFVGQVPKHMTEPQLLTMFQEFALVDEVNIIRDKTTR 60

Query: 61  ASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKN 120
           ASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKN
Sbjct: 61  ASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKN 120

Query: 121 VSEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGKCKMEGSS 180
           VSEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGKCKMEGSS
Sbjct: 121 VSEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGKCKMEGSS 180

Query: 181 VPLVVKWADTEKERQARKAQKAQSQATNVLNADSQHPSLFGAMPLGYVPPYNGYGYQAPG 240
           VPLVVKWADTEKERQARKAQKAQSQATNVLNADSQHPSLFGAMPLGYVPPYNGYGYQAPG
Sbjct: 181 VPLVVKWADTEKERQARKAQKAQSQATNVLNADSQHPSLFGAMPLGYVPPYNGYGYQAPG 240

Query: 241 SYGLMQYHLPPMQNQSGFPNMIPQLNQGNAMRGIPPDLGPGMATRNYAMPPASYSAYPGV 300
           SYGLMQYHLPPMQNQSGFPNMIPQLNQGNAMRGIPPDLGPGMATRNYAMPPASYSAYPGV
Sbjct: 241 SYGLMQYHLPPMQNQSGFPNMIPQLNQGNAMRGIPPDLGPGMATRNYAMPPASYSAYPGV 300

Query: 301 PALQHPMAYPGGMMSPGL 319
           PALQHPMAYPGGMMSPG+
Sbjct: 301 PALQHPMAYPGGMMSPGV 318

[Close]

BLAST of IVF0015966 vs. ExPASy TrEMBL
Match: A0A1S3BRF9 (RNA-binding protein BRN1 OS=Cucumis melo OX=3656 GN=LOC103492722 PE=4 SV=1)

HSP 1 Score: 638.3 bits (1645), Expect = 1.8e-179
Identity = 317/318 (99.69%), Postives = 318/318 (100.00%), Query Frame = 0


Query: 1   MAEGSRGGERKESSNQEEEDSVKLFVGQVPKHMTEPQLLTMFQEFALVDEVNIIRDKTTR 60
           MAEGSRGGERKESSNQEEEDSVKLFVGQVPKHMTEPQLLTMFQEFALVDEVNIIRDKTTR
Sbjct: 1   MAEGSRGGERKESSNQEEEDSVKLFVGQVPKHMTEPQLLTMFQEFALVDEVNIIRDKTTR 60

Query: 61  ASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKN 120
           ASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKN
Sbjct: 61  ASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKN 120

Query: 121 VSEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGKCKMEGSS 180
           VSEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGKCKMEGSS
Sbjct: 121 VSEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGKCKMEGSS 180

Query: 181 VPLVVKWADTEKERQARKAQKAQSQATNVLNADSQHPSLFGAMPLGYVPPYNGYGYQAPG 240
           VPLVVKWADTEKERQARKAQKAQSQATNVLNADSQHPSLFGAMPLGYVPPYNGYGYQAPG
Sbjct: 181 VPLVVKWADTEKERQARKAQKAQSQATNVLNADSQHPSLFGAMPLGYVPPYNGYGYQAPG 240

Query: 241 SYGLMQYHLPPMQNQSGFPNMIPQLNQGNAMRGIPPDLGPGMATRNYAMPPASYSAYPGV 300
           SYGLMQYHLPPMQNQSGFPNMIPQLNQGNAMRGIPPDLGPGMATRNYAMPPASYSAYPGV
Sbjct: 241 SYGLMQYHLPPMQNQSGFPNMIPQLNQGNAMRGIPPDLGPGMATRNYAMPPASYSAYPGV 300

Query: 301 PALQHPMAYPGGMMSPGL 319
           PALQHPMAYPGGMMSPG+
Sbjct: 301 PALQHPMAYPGGMMSPGV 318

[Close]

BLAST of IVF0015966 vs. ExPASy TrEMBL
Match: A0A5A7UR22 (RNA-binding protein BRN1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold497G00150 PE=4 SV=1)

HSP 1 Score: 622.9 bits (1605), Expect = 7.6e-175
Identity = 317/336 (94.35%), Postives = 318/336 (94.64%), Query Frame = 0


Query: 1   MAEGSRGGERKESSNQEEEDSVKLFVGQVPKHMTEPQLLTMFQEFALVDEVNIIRDKTTR 60
           MAEGSRGGERKESSNQEEEDSVKLFVGQVPKHMTEPQLLTMFQEFALVDEVNIIRDKTTR
Sbjct: 1   MAEGSRGGERKESSNQEEEDSVKLFVGQVPKHMTEPQLLTMFQEFALVDEVNIIRDKTTR 60

Query: 61  ASRG-----------------CCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADG 120
           ASRG                 CCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADG
Sbjct: 61  ASRGVFFFFFSPFDFNFNYFSCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADG 120

Query: 121 ELERL-EHKLFIGMLPKNVSEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQ 180
           ELERL EHKLFIGMLPKNVSEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQ
Sbjct: 121 ELERLAEHKLFIGMLPKNVSEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQ 180

Query: 181 AVAALEAINGKCKMEGSSVPLVVKWADTEKERQARKAQKAQSQATNVLNADSQHPSLFGA 240
           AVAALEAINGKCKMEGSSVPLVVKWADTEKERQARKAQKAQSQATNVLNADSQHPSLFGA
Sbjct: 181 AVAALEAINGKCKMEGSSVPLVVKWADTEKERQARKAQKAQSQATNVLNADSQHPSLFGA 240

Query: 241 MPLGYVPPYNGYGYQAPGSYGLMQYHLPPMQNQSGFPNMIPQLNQGNAMRGIPPDLGPGM 300
           MPLGYVPPYNGYGYQAPGSYGLMQYHLPPMQNQSGFPNMIPQLNQGNAMRGIPPDLGPGM
Sbjct: 241 MPLGYVPPYNGYGYQAPGSYGLMQYHLPPMQNQSGFPNMIPQLNQGNAMRGIPPDLGPGM 300

Query: 301 ATRNYAMPPASYSAYPGVPALQHPMAYPGGMMSPGL 319
           ATRNYAMPPASYSAYPGVPALQHPMAYPGGMMSPG+
Sbjct: 301 ATRNYAMPPASYSAYPGVPALQHPMAYPGGMMSPGV 336

[Close]

BLAST of IVF0015966 vs. ExPASy TrEMBL
Match: A0A5D3D400 (RNA-binding protein BRN1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G002080 PE=4 SV=1)

HSP 1 Score: 621.3 bits (1601), Expect = 2.2e-174
Identity = 317/351 (90.31%), Postives = 318/351 (90.60%), Query Frame = 0


Query: 1   MAEGSRGGERKESSNQEEEDSVKLFVGQVPKHMTEPQLLTMFQEFALVDEVNIIRDKTTR 60
           MAEGSRGGERKESSNQEEEDSVKLFVGQVPKHMTEPQLLTMFQEFALVDEVNIIRDKTTR
Sbjct: 1   MAEGSRGGERKESSNQEEEDSVKLFVGQVPKHMTEPQLLTMFQEFALVDEVNIIRDKTTR 60

Query: 61  ASR---------------------------------GCCFVICPSRQEADKAVNACHNKK 120
           ASR                                 GCCFVICPSRQEADKAVNACHNKK
Sbjct: 61  ASRGVFFFFFXFSLLISISTTLVCFTFTLTFSLFFFGCCFVICPSRQEADKAVNACHNKK 120

Query: 121 TLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEDEVSGLFSQYGTIKDLQILRGSQQ 180
           TLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEDEVSGLFSQYGTIKDLQILRGSQQ
Sbjct: 121 TLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEDEVSGLFSQYGTIKDLQILRGSQQ 180

Query: 181 TSKGCAFLKYETKDQAVAALEAINGKCKMEGSSVPLVVKWADTEKERQARKAQKAQSQAT 240
           TSKGCAFLKYETKDQAVAALEAINGKCKMEGSSVPLVVKWADTEKERQARKAQKAQSQAT
Sbjct: 181 TSKGCAFLKYETKDQAVAALEAINGKCKMEGSSVPLVVKWADTEKERQARKAQKAQSQAT 240

Query: 241 NVLNADSQHPSLFGAMPLGYVPPYNGYGYQAPGSYGLMQYHLPPMQNQSGFPNMIPQLNQ 300
           NVLNADSQHPSLFGAMPLGYVPPYNGYGYQAPGSYGLMQYHLPPMQNQSGFPNMIPQLNQ
Sbjct: 241 NVLNADSQHPSLFGAMPLGYVPPYNGYGYQAPGSYGLMQYHLPPMQNQSGFPNMIPQLNQ 300

Query: 301 GNAMRGIPPDLGPGMATRNYAMPPASYSAYPGVPALQHPMAYPGGMMSPGL 319
           GNAMRGIPPDLGPGMATRNYAMPPASYSAYPGVPALQHPMAYPGGMMSPG+
Sbjct: 301 GNAMRGIPPDLGPGMATRNYAMPPASYSAYPGVPALQHPMAYPGGMMSPGV 351

[Close]

BLAST of IVF0015966 vs. ExPASy TrEMBL
Match: A0A6J1GP82 (RNA-binding protein BRN1-like OS=Cucurbita moschata OX=3662 GN=LOC111456261 PE=4 SV=1)

HSP 1 Score: 593.6 bits (1529), Expect = 4.9e-166
Identity = 301/320 (94.06%), Postives = 306/320 (95.62%), Query Frame = 0


Query: 1   MAEGSRGGERKESSNQEEEDSVKLFVGQVPKHMTEPQLLTMFQEFALVDEVNIIRDKTTR 60
           MAEGS GGERK SS QEEEDSVKLFVGQVPKHMTE QLL MFQEFALVDEVNIIRDKTTR
Sbjct: 1   MAEGSGGGERKGSS-QEEEDSVKLFVGQVPKHMTEAQLLAMFQEFALVDEVNIIRDKTTR 60

Query: 61  ASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKN 120
           ASRGCCFVICPSRQEADKA+NACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKN
Sbjct: 61  ASRGCCFVICPSRQEADKAINACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKN 120

Query: 121 VSEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGKCKMEGSS 180
           VSEDEVS LFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGK KMEGSS
Sbjct: 121 VSEDEVSSLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGKHKMEGSS 180

Query: 181 VPLVVKWADTEKERQARKAQKAQSQATNVLNADSQHPSLFGAMPLGYVPPYNGYGYQAPG 240
           VPLVVKWADTEKERQARKAQKAQSQA+NVLNADSQ  SLFGA+PLGY+PPYNGYGYQAPG
Sbjct: 181 VPLVVKWADTEKERQARKAQKAQSQASNVLNADSQRSSLFGAVPLGYIPPYNGYGYQAPG 240

Query: 241 SYGLMQYHLPPMQNQSGFPNMIPQLNQGNAMRGIPPDLGPGMATRNYAMPPASY--SAYP 300
           SYGLMQYHLPPMQNQSGFPNMIPQLNQGNAMRGIPPDLGPGMATRNY MPPASY  SAYP
Sbjct: 241 SYGLMQYHLPPMQNQSGFPNMIPQLNQGNAMRGIPPDLGPGMATRNYGMPPASYVGSAYP 300

Query: 301 GVPALQHPMAYPGGMMSPGL 319
            VP LQHPMAYPGGMMSPG+
Sbjct: 301 AVPGLQHPMAYPGGMMSPGV 319

[Close]

BLAST of IVF0015966 vs. NCBI nr
Match: XP_008451423.1 (PREDICTED: RNA-binding protein BRN1 [Cucumis melo])

HSP 1 Score: 632 bits (1631), Expect = 1.16e-226
Identity = 317/318 (99.69%), Postives = 318/318 (100.00%), Query Frame = 0


Query: 1   MAEGSRGGERKESSNQEEEDSVKLFVGQVPKHMTEPQLLTMFQEFALVDEVNIIRDKTTR 60
           MAEGSRGGERKESSNQEEEDSVKLFVGQVPKHMTEPQLLTMFQEFALVDEVNIIRDKTTR
Sbjct: 1   MAEGSRGGERKESSNQEEEDSVKLFVGQVPKHMTEPQLLTMFQEFALVDEVNIIRDKTTR 60

Query: 61  ASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKN 120
           ASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKN
Sbjct: 61  ASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKN 120

Query: 121 VSEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGKCKMEGSS 180
           VSEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGKCKMEGSS
Sbjct: 121 VSEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGKCKMEGSS 180

Query: 181 VPLVVKWADTEKERQARKAQKAQSQATNVLNADSQHPSLFGAMPLGYVPPYNGYGYQAPG 240
           VPLVVKWADTEKERQARKAQKAQSQATNVLNADSQHPSLFGAMPLGYVPPYNGYGYQAPG
Sbjct: 181 VPLVVKWADTEKERQARKAQKAQSQATNVLNADSQHPSLFGAMPLGYVPPYNGYGYQAPG 240

Query: 241 SYGLMQYHLPPMQNQSGFPNMIPQLNQGNAMRGIPPDLGPGMATRNYAMPPASYSAYPGV 300
           SYGLMQYHLPPMQNQSGFPNMIPQLNQGNAMRGIPPDLGPGMATRNYAMPPASYSAYPGV
Sbjct: 241 SYGLMQYHLPPMQNQSGFPNMIPQLNQGNAMRGIPPDLGPGMATRNYAMPPASYSAYPGV 300

Query: 301 PALQHPMAYPGGMMSPGL 318
           PALQHPMAYPGGMMSPG+
Sbjct: 301 PALQHPMAYPGGMMSPGV 318

[Close]

BLAST of IVF0015966 vs. NCBI nr
Match: XP_004148884.1 (RNA-binding protein BRN1 [Cucumis sativus] >KGN44838.1 hypothetical protein Csa_016202 [Cucumis sativus])

HSP 1 Score: 632 bits (1631), Expect = 1.16e-226
Identity = 317/318 (99.69%), Postives = 318/318 (100.00%), Query Frame = 0


Query: 1   MAEGSRGGERKESSNQEEEDSVKLFVGQVPKHMTEPQLLTMFQEFALVDEVNIIRDKTTR 60
           MAEGSRGGERKESSNQEEEDSVKLFVGQVPKHMTEPQLLTMFQEFALVDEVNIIRDKTTR
Sbjct: 1   MAEGSRGGERKESSNQEEEDSVKLFVGQVPKHMTEPQLLTMFQEFALVDEVNIIRDKTTR 60

Query: 61  ASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKN 120
           ASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKN
Sbjct: 61  ASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKN 120

Query: 121 VSEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGKCKMEGSS 180
           VSEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGKCKMEGSS
Sbjct: 121 VSEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGKCKMEGSS 180

Query: 181 VPLVVKWADTEKERQARKAQKAQSQATNVLNADSQHPSLFGAMPLGYVPPYNGYGYQAPG 240
           VPLVVKWADTEKERQARKAQKAQSQATNVLNADSQHPSLFGAMPLGYVPPYNGYGYQAPG
Sbjct: 181 VPLVVKWADTEKERQARKAQKAQSQATNVLNADSQHPSLFGAMPLGYVPPYNGYGYQAPG 240

Query: 241 SYGLMQYHLPPMQNQSGFPNMIPQLNQGNAMRGIPPDLGPGMATRNYAMPPASYSAYPGV 300
           SYGLMQYHLPPMQNQSGFPNMIPQLNQGNAMRGIPPDLGPGMATRNYAMPPASYSAYPGV
Sbjct: 241 SYGLMQYHLPPMQNQSGFPNMIPQLNQGNAMRGIPPDLGPGMATRNYAMPPASYSAYPGV 300

Query: 301 PALQHPMAYPGGMMSPGL 318
           PALQHPMAYPGGMMSPG+
Sbjct: 301 PALQHPMAYPGGMMSPGV 318

[Close]

BLAST of IVF0015966 vs. NCBI nr
Match: KAA0057544.1 (RNA-binding protein BRN1 [Cucumis melo var. makuwa])

HSP 1 Score: 617 bits (1591), Expect = 2.76e-220
Identity = 317/336 (94.35%), Postives = 318/336 (94.64%), Query Frame = 0


Query: 1   MAEGSRGGERKESSNQEEEDSVKLFVGQVPKHMTEPQLLTMFQEFALVDEVNIIRDKTTR 60
           MAEGSRGGERKESSNQEEEDSVKLFVGQVPKHMTEPQLLTMFQEFALVDEVNIIRDKTTR
Sbjct: 1   MAEGSRGGERKESSNQEEEDSVKLFVGQVPKHMTEPQLLTMFQEFALVDEVNIIRDKTTR 60

Query: 61  ASRG-----------------CCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADG 120
           ASRG                 CCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADG
Sbjct: 61  ASRGVFFFFFSPFDFNFNYFSCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADG 120

Query: 121 ELERL-EHKLFIGMLPKNVSEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQ 180
           ELERL EHKLFIGMLPKNVSEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQ
Sbjct: 121 ELERLAEHKLFIGMLPKNVSEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQ 180

Query: 181 AVAALEAINGKCKMEGSSVPLVVKWADTEKERQARKAQKAQSQATNVLNADSQHPSLFGA 240
           AVAALEAINGKCKMEGSSVPLVVKWADTEKERQARKAQKAQSQATNVLNADSQHPSLFGA
Sbjct: 181 AVAALEAINGKCKMEGSSVPLVVKWADTEKERQARKAQKAQSQATNVLNADSQHPSLFGA 240

Query: 241 MPLGYVPPYNGYGYQAPGSYGLMQYHLPPMQNQSGFPNMIPQLNQGNAMRGIPPDLGPGM 300
           MPLGYVPPYNGYGYQAPGSYGLMQYHLPPMQNQSGFPNMIPQLNQGNAMRGIPPDLGPGM
Sbjct: 241 MPLGYVPPYNGYGYQAPGSYGLMQYHLPPMQNQSGFPNMIPQLNQGNAMRGIPPDLGPGM 300

Query: 301 ATRNYAMPPASYSAYPGVPALQHPMAYPGGMMSPGL 318
           ATRNYAMPPASYSAYPGVPALQHPMAYPGGMMSPG+
Sbjct: 301 ATRNYAMPPASYSAYPGVPALQHPMAYPGGMMSPGV 336

[Close]

BLAST of IVF0015966 vs. NCBI nr
Match: TYK18266.1 (RNA-binding protein BRN1 [Cucumis melo var. makuwa])

HSP 1 Score: 615 bits (1587), Expect = 1.92e-219
Identity = 317/351 (90.31%), Postives = 318/351 (90.60%), Query Frame = 0


Query: 1   MAEGSRGGERKESSNQEEEDSVKLFVGQVPKHMTEPQLLTMFQEFALVDEVNIIRDKTTR 60
           MAEGSRGGERKESSNQEEEDSVKLFVGQVPKHMTEPQLLTMFQEFALVDEVNIIRDKTTR
Sbjct: 1   MAEGSRGGERKESSNQEEEDSVKLFVGQVPKHMTEPQLLTMFQEFALVDEVNIIRDKTTR 60

Query: 61  ASRG---------------------------------CCFVICPSRQEADKAVNACHNKK 120
           ASRG                                 CCFVICPSRQEADKAVNACHNKK
Sbjct: 61  ASRGVFFFFFXFSLLISISTTLVCFTFTLTFSLFFFGCCFVICPSRQEADKAVNACHNKK 120

Query: 121 TLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEDEVSGLFSQYGTIKDLQILRGSQQ 180
           TLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEDEVSGLFSQYGTIKDLQILRGSQQ
Sbjct: 121 TLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEDEVSGLFSQYGTIKDLQILRGSQQ 180

Query: 181 TSKGCAFLKYETKDQAVAALEAINGKCKMEGSSVPLVVKWADTEKERQARKAQKAQSQAT 240
           TSKGCAFLKYETKDQAVAALEAINGKCKMEGSSVPLVVKWADTEKERQARKAQKAQSQAT
Sbjct: 181 TSKGCAFLKYETKDQAVAALEAINGKCKMEGSSVPLVVKWADTEKERQARKAQKAQSQAT 240

Query: 241 NVLNADSQHPSLFGAMPLGYVPPYNGYGYQAPGSYGLMQYHLPPMQNQSGFPNMIPQLNQ 300
           NVLNADSQHPSLFGAMPLGYVPPYNGYGYQAPGSYGLMQYHLPPMQNQSGFPNMIPQLNQ
Sbjct: 241 NVLNADSQHPSLFGAMPLGYVPPYNGYGYQAPGSYGLMQYHLPPMQNQSGFPNMIPQLNQ 300

Query: 301 GNAMRGIPPDLGPGMATRNYAMPPASYSAYPGVPALQHPMAYPGGMMSPGL 318
           GNAMRGIPPDLGPGMATRNYAMPPASYSAYPGVPALQHPMAYPGGMMSPG+
Sbjct: 301 GNAMRGIPPDLGPGMATRNYAMPPASYSAYPGVPALQHPMAYPGGMMSPGV 351

[Close]

BLAST of IVF0015966 vs. NCBI nr
Match: XP_038900154.1 (RNA-binding protein BRN1 [Benincasa hispida])

HSP 1 Score: 593 bits (1529), Expect = 4.09e-211
Identity = 305/320 (95.31%), Postives = 309/320 (96.56%), Query Frame = 0


Query: 1   MAEGSRGGERKESSNQEEEDSVKLFVGQVPKHMTEPQLLTMFQEFALVDEVNIIRDKTTR 60
           MAEGSRG ERKES NQEEEDSVKLFVGQVPK MTE QLL MFQEFALVDEVNIIRDKTTR
Sbjct: 1   MAEGSRG-ERKES-NQEEEDSVKLFVGQVPKLMTEAQLLAMFQEFALVDEVNIIRDKTTR 60

Query: 61  ASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKN 120
           ASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKN
Sbjct: 61  ASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKN 120

Query: 121 VSEDEVSGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGKCKMEGSS 180
           VSEDEVS LFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGKCKMEGSS
Sbjct: 121 VSEDEVSSLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGKCKMEGSS 180

Query: 181 VPLVVKWADTEKERQARKAQKAQSQATNVLNADSQHPSLFGAMPLGYVPPYNGYGYQAPG 240
           VPLVVKWADTEKERQARKAQKAQSQA+NVLNADSQHPSLFGAMPLGYVPPYNGYGYQAPG
Sbjct: 181 VPLVVKWADTEKERQARKAQKAQSQASNVLNADSQHPSLFGAMPLGYVPPYNGYGYQAPG 240

Query: 241 SYGLMQYHLPPMQNQSGFPNMIPQLNQGNAMRGIPPDLGPGMATRNYAMPPASY--SAYP 300
           SYGLMQYHLPPMQNQSG+PNMIPQLNQGNAMRGIPPDLGPGMATRNY MPPA+Y  SAYP
Sbjct: 241 SYGLMQYHLPPMQNQSGYPNMIPQLNQGNAMRGIPPDLGPGMATRNYGMPPANYVSSAYP 300

Query: 301 GVPALQHPMAYPGGMMSPGL 318
           GVP LQHPMAY GGMMSPG+
Sbjct: 301 GVPGLQHPMAYAGGMMSPGV 318

[Close]

BLAST of IVF0015966 vs. TAIR 10
Match: AT4G03110.2 (RNA-binding protein-defense related 1 )

HSP 1 Score: 434.5 bits (1116), Expect = 7.4e-122
Identity = 222/315 (70.48%), Postives = 260/315 (82.54%), Query Frame = 0


Query: 9   ERKESSNQ--EEEDSVKLFVGQVPKHMTEPQLLTMFQEFALVDEVNIIRDKTTRASRGCC 68
           E KE + +  EEE+SVKLFVGQ+PKHM+E QLLT+FQEFA+VDEVNII+DK TRASRGCC
Sbjct: 3   EAKEENREKNEEEESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCC 62

Query: 69  FVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEDEV 128
           F++CPSR+EADK VNACHNKKTLPGA+S LQVKYADGELERLEHKLF+GMLPKNVSE EV
Sbjct: 63  FLLCPSREEADKLVNACHNKKTLPGANSLLQVKYADGELERLEHKLFVGMLPKNVSEAEV 122

Query: 129 SGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGKCKMEGSSVPLVVK 188
             LFS+YGTIKDLQILRG+QQTSKGCAFLKYETK+QAV+A+E+INGK KMEGS+VPLVVK
Sbjct: 123 QSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESINGKHKMEGSTVPLVVK 182

Query: 189 WADTEKERQARKAQKAQSQATNVLNADSQHPSLFGAMPLGYVPPYNGYGYQAPGSYGLMQ 248
           WADTE+ER  R+ QKAQS    + N D  +PSLFGA+P+GYVPPYNGYGY  PG+YG   
Sbjct: 183 WADTERERHTRRLQKAQSHIARLGNGDPTNPSLFGALPMGYVPPYNGYGYHPPGTYG--- 242

Query: 249 YHLPPMQNQSGFPNMIPQLNQG--NAMRGIPPD-LGPGMATRNYAMPPASY--SAYPGVP 308
           Y LPP+QNQ+ F NMI Q NQG  NA++G  PD + P +A RN+ MPP +Y  S YP + 
Sbjct: 243 YMLPPIQNQAAFSNMIAQPNQGNNNALQGTSPDSVPPRLARRNFPMPPGNYMGSGYPAMR 302

Query: 309 ALQHPMAYPGGMMSP 317
               P AYP G++SP
Sbjct: 303 GHPFPFAYPRGIVSP 314

[Close]

BLAST of IVF0015966 vs. TAIR 10
Match: AT4G03110.1 (RNA-binding protein-defense related 1 )

HSP 1 Score: 431.8 bits (1109), Expect = 4.8e-121
Identity = 223/316 (70.57%), Postives = 261/316 (82.59%), Query Frame = 0


Query: 9   ERKESSNQ--EEEDSVKLFVGQVPKHMTEPQLLTMFQEFALVDEVNIIRDKTTRASRGCC 68
           E KE + +  EEE+SVKLFVGQ+PKHM+E QLLT+FQEFA+VDEVNII+DK TRASRGCC
Sbjct: 3   EAKEENREKNEEEESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCC 62

Query: 69  FVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEDEV 128
           F++CPSR+EADK VNACHNKKTLPGA+S LQVKYADGELERLEHKLF+GMLPKNVSE EV
Sbjct: 63  FLLCPSREEADKLVNACHNKKTLPGANSLLQVKYADGELERLEHKLFVGMLPKNVSEAEV 122

Query: 129 SGLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGKCKMEGSSVPLVVK 188
             LFS+YGTIKDLQILRG+QQTSKGCAFLKYETK+QAV+A+E+INGK KMEGS+VPLVVK
Sbjct: 123 QSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESINGKHKMEGSTVPLVVK 182

Query: 189 WADTEKERQARKAQKAQSQATNVLNADSQHPSLFGAMPLGYVPPYNGYGY-QAPGSYGLM 248
           WADTE+ER  R+ QKAQS    + N D  +PSLFGA+P+GYVPPYNGYGY Q PG+YG  
Sbjct: 183 WADTERERHTRRLQKAQSHIARLGNGDPTNPSLFGALPMGYVPPYNGYGYHQPPGTYG-- 242

Query: 249 QYHLPPMQNQSGFPNMIPQLNQG--NAMRGIPPD-LGPGMATRNYAMPPASY--SAYPGV 308
            Y LPP+QNQ+ F NMI Q NQG  NA++G  PD + P +A RN+ MPP +Y  S YP +
Sbjct: 243 -YMLPPIQNQAAFSNMIAQPNQGNNNALQGTSPDSVPPRLARRNFPMPPGNYMGSGYPAM 302

Query: 309 PALQHPMAYPGGMMSP 317
                P AYP G++SP
Sbjct: 303 RGHPFPFAYPRGIVSP 315

[Close]

BLAST of IVF0015966 vs. TAIR 10
Match: AT1G03457.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 386.3 bits (991), Expect = 2.3e-107
Identity = 200/309 (64.72%), Postives = 241/309 (77.99%), Query Frame = 0


Query: 17  EEEDSVKLFVGQVPKHMTEPQLLTMFQEFALVDEVNIIRDKTTRASRGCCFVICPSRQEA 76
           E E+ VKLFVGQVPKHMTE QLLT+F+EF++V+EVNII++KTTRA RGCCF+ CP+R++A
Sbjct: 7   ENEERVKLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDA 66

Query: 77  DKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEDEVSGLFSQYGTI 136
           DK +N+ HNKKTLPGASSPLQVKYADGELERLEHKLF+GMLPKNVSE EV  LFS+YGTI
Sbjct: 67  DKVINSFHNKKTLPGASSPLQVKYADGELERLEHKLFVGMLPKNVSETEVQSLFSEYGTI 126

Query: 137 KDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGKCKMEGSSVPLVVKWADTEKERQA 196
           KDLQILRGS QTSKGC FLKYE+K+QAVAA+EA+NG+  MEG++VPL+VKWADTEKERQA
Sbjct: 127 KDLQILRGSLQTSKGCLFLKYESKEQAVAAMEALNGRHIMEGANVPLIVKWADTEKERQA 186

Query: 197 RKAQKAQSQATNVLNADSQHPSLFGAMPLGYVPPYNGYGYQAPGSYGLMQYHLPPMQNQS 256
           R+  K QS   +V   D Q+PS+FGA+P+ YVPPYNGYGY  PG+YG   Y LPP+Q Q 
Sbjct: 187 RRLLKVQS---HVSRLDPQNPSMFGALPMSYVPPYNGYGYHVPGTYG---YMLPPIQTQH 246

Query: 257 GFPNMI-PQLNQGNAMRG------IPPDLGPGMATRNYAMPPASYSAYPGVPALQHPMAY 316
            F N+I P    G A++G      +PP L P    RN+     +Y    G   LQ+PMA+
Sbjct: 247 AFHNVISPNQGNGRALQGTALTESVPPRLAP---RRNFPTALGNY----GYHGLQYPMAF 302

Query: 317 PGGMMSPGL 319
           P GM+ P L
Sbjct: 307 PRGMIPPRL 302

[Close]

BLAST of IVF0015966 vs. TAIR 10
Match: AT1G03457.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 378.6 bits (971), Expect = 4.8e-105
Identity = 200/318 (62.89%), Postives = 241/318 (75.79%), Query Frame = 0


Query: 17  EEEDSVKLFVGQVPKHMTEPQLLTMFQEFALVDEVNIIRDKTTRASRGCCFVICPSRQEA 76
           E E+ VKLFVGQVPKHMTE QLLT+F+EF++V+EVNII++KTTRA RGCCF+ CP+R++A
Sbjct: 7   ENEERVKLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDA 66

Query: 77  DKAVNACHNKKTLPGASSPLQVKYADGELERL---------EHKLFIGMLPKNVSEDEVS 136
           DK +N+ HNKKTLPGASSPLQVKYADGELERL         EHKLF+GMLPKNVSE EV 
Sbjct: 67  DKVINSFHNKKTLPGASSPLQVKYADGELERLDVLDCSCNPEHKLFVGMLPKNVSETEVQ 126

Query: 137 GLFSQYGTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGKCKMEGSSVPLVVKW 196
            LFS+YGTIKDLQILRGS QTSKGC FLKYE+K+QAVAA+EA+NG+  MEG++VPL+VKW
Sbjct: 127 SLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEALNGRHIMEGANVPLIVKW 186

Query: 197 ADTEKERQARKAQKAQSQATNVLNADSQHPSLFGAMPLGYVPPYNGYGYQAPGSYGLMQY 256
           ADTEKERQAR+  K QS   +V   D Q+PS+FGA+P+ YVPPYNGYGY  PG+YG   Y
Sbjct: 187 ADTEKERQARRLLKVQS---HVSRLDPQNPSMFGALPMSYVPPYNGYGYHVPGTYG---Y 246

Query: 257 HLPPMQNQSGFPNMI-PQLNQGNAMRG------IPPDLGPGMATRNYAMPPASYSAYPGV 316
            LPP+Q Q  F N+I P    G A++G      +PP L P    RN+     +Y    G 
Sbjct: 247 MLPPIQTQHAFHNVISPNQGNGRALQGTALTESVPPRLAP---RRNFPTALGNY----GY 306

Query: 317 PALQHPMAYPGGMMSPGL 319
             LQ+PMA+P GM+ P L
Sbjct: 307 HGLQYPMAFPRGMIPPRL 311

[Close]

BLAST of IVF0015966 vs. TAIR 10
Match: AT4G16280.2 (RNA binding;abscisic acid binding )

HSP 1 Score: 159.8 bits (403), Expect = 3.5e-39
Identity = 106/305 (34.75%), Postives = 163/305 (53.44%), Query Frame = 0


Query: 17  EEEDSVKLFVGQVPKHMTEPQLLTMFQEFALVDEVNIIRDKTTRASRGCCFVICPSRQEA 76
           +   +VKLFVG VP+  TE ++   F++   V EV +I+DK T   +GCCFV   + ++A
Sbjct: 115 DRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDA 174

Query: 77  DKAVNACHNKKTLPGASSPLQVKYADGELER---LEHKLFIGMLPKNVSEDEVSGLFSQY 136
           D+A+ A HN+ TLPG + P+QV+YADGE ER   LE KLF+G L K  +E EV  +F Q+
Sbjct: 175 DRAIRALHNQITLPGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQF 234

Query: 137 GTIKDLQILRGSQQTSKGCAFLKYETKDQAVAALEAINGKCKMEGSSVPLVVKWADTEKE 196
           G ++D+ ++R   + S+GC F+KY +K+ A+AA++ +NG   M G + PL+V++A+ ++ 
Sbjct: 235 GHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKRP 294

Query: 197 RQARKAQKAQSQATNVLNADSQHPSLFGAMPLGYVPPYNGYGYQAPGSYGLMQ---YHLP 256
           +     + A                    + LG  P +   G +   ++G       H  
Sbjct: 295 KPGESREMAP------------------PVGLGSGPRFQASGPRPTSNFGDSSGDVSHTN 354

Query: 257 PMQNQSGFPNMIPQLNQGNAMRGIPPDLG--PGMAT--RNYAMPPASYSAYPGVPALQHP 312
           P +  +   N+ P  N G  +RG   D    PG AT   N   P   Y    GVP L +P
Sbjct: 355 PWRPATS-RNVGPPSNTG--IRGAGSDFSPKPGQATLPSNQGGPLGGY----GVPPL-NP 393

The following BLAST results are available for this feature:

BLAST of IVF0015966 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LFS6	6.7e-120	70.57	RNA-binding protein BRN1 OS=Arabidopsis thaliana OX=3702 GN=BRN1 PE=2 SV=1	[more]
Q8GZ26	3.2e-106	64.72	RNA-binding protein BRN2 OS=Arabidopsis thaliana OX=3702 GN=BRN2 PE=1 SV=1	[more]
Q6DGV1	2.1e-41	44.44	CUGBP Elav-like family member 4 OS=Danio rerio OX=7955 GN=celf4 PE=2 SV=1	[more]
A0JM51	3.7e-41	42.05	CUGBP Elav-like family member 5 OS=Xenopus tropicalis OX=8364 GN=celf5 PE=2 SV=1	[more]
Q91579	4.8e-41	43.39	CUGBP Elav-like family member 3-A OS=Xenopus laevis OX=8355 GN=tnrc4-a PE=2 SV=2	[more]

BLAST of IVF0015966 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K5R5	1.8e-179	99.69	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G390170 PE=4 SV=1	[more]
A0A1S3BRF9	1.8e-179	99.69	RNA-binding protein BRN1 OS=Cucumis melo OX=3656 GN=LOC103492722 PE=4 SV=1	[more]
A0A5A7UR22	7.6e-175	94.35	RNA-binding protein BRN1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A5D3D400	2.2e-174	90.31	RNA-binding protein BRN1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A6J1GP82	4.9e-166	94.06	RNA-binding protein BRN1-like OS=Cucurbita moschata OX=3662 GN=LOC111456261 PE=4...	[more]

BLAST of IVF0015966 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008451423.1	1.16e-226	99.69	PREDICTED: RNA-binding protein BRN1 [Cucumis melo]	[more]
XP_004148884.1	1.16e-226	99.69	RNA-binding protein BRN1 [Cucumis sativus] >KGN44838.1 hypothetical protein Csa_...	[more]
KAA0057544.1	2.76e-220	94.35	RNA-binding protein BRN1 [Cucumis melo var. makuwa]	[more]
TYK18266.1	1.92e-219	90.31	RNA-binding protein BRN1 [Cucumis melo var. makuwa]	[more]
XP_038900154.1	4.09e-211	95.31	RNA-binding protein BRN1 [Benincasa hispida]	[more]

BLAST of IVF0015966 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G03110.2	7.4e-122	70.48	RNA-binding protein-defense related 1	[more]
AT4G03110.1	4.8e-121	70.57	RNA-binding protein-defense related 1	[more]
AT1G03457.1	2.3e-107	64.72	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G03457.2	4.8e-105	62.89	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G16280.2	3.5e-39	34.75	RNA binding;abscisic acid binding	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002343	Paraneoplastic encephalomyelitis antigen	PRINTS	PR00961	HUDSXLRNA	coord: 171..188 score: 34.26 coord: 115..130 score: 32.71 coord: 130..142 score: 52.82 coord: 22..37 score: 30.62
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 23..99 e-value: 3.4E-16 score: 69.8 coord: 111..186 e-value: 5.4E-17 score: 72.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 112..174 e-value: 1.5E-16 score: 59.9 coord: 24..88 e-value: 9.6E-13 score: 47.8
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 110..190 score: 16.107859
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 22..103 score: 13.634825
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 8..107 e-value: 8.1E-25 score: 88.9
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 108..199 e-value: 2.5E-24 score: 87.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..19
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR24012	RNA BINDING PROTEIN	coord: 16..314
None	No IPR available	PANTHER	PTHR24012:SF844	RNA-BINDING PROTEIN-DEFENSE RELATED 1-RELATED	coord: 16..314
None	No IPR available	CDD	cd12361	RRM1_2_CELF1-6_like	coord: 23..99 e-value: 4.72639E-39 score: 130.745
None	No IPR available	CDD	cd12361	RRM1_2_CELF1-6_like	coord: 111..186 e-value: 4.99804E-36 score: 122.656
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 12..105
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 108..199

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0015966.1	IVF0015966.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
cellular_component	GO:1990904	ribonucleoprotein complex
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding