IVF0015889 (gene) Melon (IVF77) v1

Overview


Name	IVF0015889
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Gag/pol protein
Location	chr12: 9383767 .. 9384042 (-)
RNA-Seq Expression	IVF0015889
Synteny	IVF0015889

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCTTCCGAGGAAAATGTGAAATTAGATGGATCTCTGAATCTCGTGTCGGAAATGAAGCGGAAGATTCAGAGAAAGATGAAAAGGACAACGACGGAAGAGATAGAGATGTGGTTTATGCGTCGTCTTCCATGCCATCGTCGCCAAAAAATGCTCTCATTCCGACAAGGTGTAGATTTACACCAAATCATTCGTCGTTTAACGAGAACCGGTACCAGAGTTCTTCGATTACAAGTGACAGAACTATCGAAGAAGAAGAGAAAATAGAGCGGTGA

mRNA sequence

ATGCTCTTCCGAGGAAAATGTGAAATTAGATGGATCTCTGAATCTCGTGTCGGAAATGAAGCGGAAGATTCAGAGAAAGATGAAAAGGACAACGACGGAAGAGATAGAGATGTGGTTTATGCGTCGTCTTCCATGCCATCGTCGCCAAAAAATGCTCTCATTCCGACAAGGTGTAGATTTACACCAAATCATTCGTCGTTTAACGAGAACCGGTACCAGAGTTCTTCGATTACAAGTGACAGAACTATCGAAGAAGAAGAGAAAATAGAGCGGTGA

Coding sequence (CDS)

ATGCTCTTCCGAGGAAAATGTGAAATTAGATGGATCTCTGAATCTCGTGTCGGAAATGAAGCGGAAGATTCAGAGAAAGATGAAAAGGACAACGACGGAAGAGATAGAGATGTGGTTTATGCGTCGTCTTCCATGCCATCGTCGCCAAAAAATGCTCTCATTCCGACAAGGTGTAGATTTACACCAAATCATTCGTCGTTTAACGAGAACCGGTACCAGAGTTCTTCGATTACAAGTGACAGAACTATCGAAGAAGAAGAGAAAATAGAGCGGTGA

Protein sequence

MLFRGKCEIRWISESRVGNEAEDSEKDEKDNDGRDRDVVYASSSMPSSPKNALIPTRCRFTPNHSSFNENRYQSSSITSDRTIEEEEKIER

Homology

[Close]

BLAST of IVF0015889 vs. ExPASy TrEMBL
Match: A0A5D3DUF5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G001500 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.1e-41
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1  MLFRGKCEIRWISESRVGNEAEDSEKDEKDNDGRDRDVVYASSSMPSSPKNALIPTRCRF 60
          MLFRGKCEIRWISESRVGNEAEDSEKDEKDNDGRDRDVVYASSSMPSSPKNALIPTRCRF
Sbjct: 1  MLFRGKCEIRWISESRVGNEAEDSEKDEKDNDGRDRDVVYASSSMPSSPKNALIPTRCRF 60

Query: 61 TPNHSSFNENRYQSSSITSDRTIEEEEKIER 92
          TPNHSSFNENRYQSSSITSDRTIEEEEKIER
Sbjct: 61 TPNHSSFNENRYQSSSITSDRTIEEEEKIER 91

[Close]

BLAST of IVF0015889 vs. ExPASy TrEMBL
Match: A0A5A7V7N3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold212G001160 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 7.0e-41
Identity = 89/91 (97.80%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1  MLFRGKCEIRWISESRVGNEAEDSEKDEKDNDGRDRDVVYASSSMPSSPKNALIPTRCRF 60
          MLFRGKCEIRWIS+SRVGNEAEDSEKDEKDNDGRDRDVVYASSSMPSSPKNALIPTRCRF
Sbjct: 1  MLFRGKCEIRWISKSRVGNEAEDSEKDEKDNDGRDRDVVYASSSMPSSPKNALIPTRCRF 60

Query: 61 TPNHSSFNENRYQSSSITSDRTIEEEEKIER 92
          TPNHSSFN+NRYQSSSITSDRTIEEEEKIER
Sbjct: 61 TPNHSSFNDNRYQSSSITSDRTIEEEEKIER 91

[Close]

BLAST of IVF0015889 vs. ExPASy TrEMBL
Match: A0A5A7UKV8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G001280 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 2.0e-40
Identity = 89/91 (97.80%), Postives = 90/91 (98.90%), Query Frame = 0


Query: 1  MLFRGKCEIRWISESRVGNEAEDSEKDEKDNDGRDRDVVYASSSMPSSPKNALIPTRCRF 60
          MLFRGKCEIRWISESRVGNEAEDSEKDEKDNDGRDRDVVYASSSMPSSPKNALI TRCRF
Sbjct: 1  MLFRGKCEIRWISESRVGNEAEDSEKDEKDNDGRDRDVVYASSSMPSSPKNALISTRCRF 60

Query: 61 TPNHSSFNENRYQSSSITSDRTIEEEEKIER 92
          TPNHSSFN+NRYQSSSITSDRTIEEEEKIER
Sbjct: 61 TPNHSSFNDNRYQSSSITSDRTIEEEEKIER 91

[Close]

BLAST of IVF0015889 vs. ExPASy TrEMBL
Match: A0A5A7SWM4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G00630 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 5.0e-39
Identity = 86/90 (95.56%), Postives = 89/90 (98.89%), Query Frame = 0


Query: 1  MLFRGKCEIRWISESRVGNEAEDSEKDEKDNDGRDRDVVYASSSMPSSPKNALIPTRCRF 60
          MLF+GKCEIRWISESRV NEA+DSEKDEKDNDGRDRDVVYASSSMPSSPKNALIPTRCRF
Sbjct: 1  MLFQGKCEIRWISESRVENEAKDSEKDEKDNDGRDRDVVYASSSMPSSPKNALIPTRCRF 60

Query: 61 TPNHSSFNENRYQSSSITSDRTIEEEEKIE 91
          TPNHSSFN+NRYQSSSITSDRTIEEEEKIE
Sbjct: 61 TPNHSSFNDNRYQSSSITSDRTIEEEEKIE 90

[Close]

BLAST of IVF0015889 vs. ExPASy TrEMBL
Match: A0A5A7UL90 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold288G002080 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 9.9e-35
Identity = 77/78 (98.72%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 1  MLFRGKCEIRWISESRVGNEAEDSEKDEKDNDGRDRDVVYASSSMPSSPKNALIPTRCRF 60
          MLFRGKCEIRWISES VGNEAEDSEKDEKDNDGRDRDVVYASSSMPSSPKNALIPTRCRF
Sbjct: 1  MLFRGKCEIRWISESHVGNEAEDSEKDEKDNDGRDRDVVYASSSMPSSPKNALIPTRCRF 60

Query: 61 TPNHSSFNENRYQSSSIT 79
          TPNHSSFNENRYQSSSIT
Sbjct: 61 TPNHSSFNENRYQSSSIT 78

[Close]

BLAST of IVF0015889 vs. NCBI nr
Match: KAA0039167.1 (uncharacterized protein E6C27_scaffold121G00700 [Cucumis melo var. makuwa] >KAA0052049.1 uncharacterized protein E6C27_scaffold578G00120 [Cucumis melo var. makuwa] >KAA0061151.1 uncharacterized protein E6C27_scaffold753G00180 [Cucumis melo var. makuwa] >TYK05359.1 uncharacterized protein E5676_scaffold83G00280 [Cucumis melo var. makuwa] >TYK12370.1 uncharacterized protein E5676_scaffold302G001500 [Cucumis melo var. makuwa])

HSP 1 Score: 181 bits (460), Expect = 1.58e-57
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1  MLFRGKCEIRWISESRVGNEAEDSEKDEKDNDGRDRDVVYASSSMPSSPKNALIPTRCRF 60
          MLFRGKCEIRWISESRVGNEAEDSEKDEKDNDGRDRDVVYASSSMPSSPKNALIPTRCRF
Sbjct: 1  MLFRGKCEIRWISESRVGNEAEDSEKDEKDNDGRDRDVVYASSSMPSSPKNALIPTRCRF 60

Query: 61 TPNHSSFNENRYQSSSITSDRTIEEEEKIER 91
          TPNHSSFNENRYQSSSITSDRTIEEEEKIER
Sbjct: 61 TPNHSSFNENRYQSSSITSDRTIEEEEKIER 91

[Close]

BLAST of IVF0015889 vs. NCBI nr
Match: KAA0061741.1 (uncharacterized protein E6C27_scaffold212G001160 [Cucumis melo var. makuwa])

HSP 1 Score: 179 bits (453), Expect = 1.84e-56
Identity = 89/91 (97.80%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1  MLFRGKCEIRWISESRVGNEAEDSEKDEKDNDGRDRDVVYASSSMPSSPKNALIPTRCRF 60
          MLFRGKCEIRWIS+SRVGNEAEDSEKDEKDNDGRDRDVVYASSSMPSSPKNALIPTRCRF
Sbjct: 1  MLFRGKCEIRWISKSRVGNEAEDSEKDEKDNDGRDRDVVYASSSMPSSPKNALIPTRCRF 60

Query: 61 TPNHSSFNENRYQSSSITSDRTIEEEEKIER 91
          TPNHSSFN+NRYQSSSITSDRTIEEEEKIER
Sbjct: 61 TPNHSSFNDNRYQSSSITSDRTIEEEEKIER 91

[Close]

BLAST of IVF0015889 vs. NCBI nr
Match: KAA0054315.1 (uncharacterized protein E6C27_scaffold24G00360 [Cucumis melo var. makuwa] >TYK12351.1 uncharacterized protein E5676_scaffold302G001280 [Cucumis melo var. makuwa])

HSP 1 Score: 177 bits (449), Expect = 7.52e-56
Identity = 89/91 (97.80%), Postives = 90/91 (98.90%), Query Frame = 0


Query: 1  MLFRGKCEIRWISESRVGNEAEDSEKDEKDNDGRDRDVVYASSSMPSSPKNALIPTRCRF 60
          MLFRGKCEIRWISESRVGNEAEDSEKDEKDNDGRDRDVVYASSSMPSSPKNALI TRCRF
Sbjct: 1  MLFRGKCEIRWISESRVGNEAEDSEKDEKDNDGRDRDVVYASSSMPSSPKNALISTRCRF 60

Query: 61 TPNHSSFNENRYQSSSITSDRTIEEEEKIER 91
          TPNHSSFN+NRYQSSSITSDRTIEEEEKIER
Sbjct: 61 TPNHSSFNDNRYQSSSITSDRTIEEEEKIER 91

[Close]

BLAST of IVF0015889 vs. NCBI nr
Match: KAA0035440.1 (uncharacterized protein E6C27_scaffold285G00630 [Cucumis melo var. makuwa])

HSP 1 Score: 172 bits (437), Expect = 6.13e-54
Identity = 86/90 (95.56%), Postives = 89/90 (98.89%), Query Frame = 0


Query: 1  MLFRGKCEIRWISESRVGNEAEDSEKDEKDNDGRDRDVVYASSSMPSSPKNALIPTRCRF 60
          MLF+GKCEIRWISESRV NEA+DSEKDEKDNDGRDRDVVYASSSMPSSPKNALIPTRCRF
Sbjct: 1  MLFQGKCEIRWISESRVENEAKDSEKDEKDNDGRDRDVVYASSSMPSSPKNALIPTRCRF 60

Query: 61 TPNHSSFNENRYQSSSITSDRTIEEEEKIE 90
          TPNHSSFN+NRYQSSSITSDRTIEEEEKIE
Sbjct: 61 TPNHSSFNDNRYQSSSITSDRTIEEEEKIE 90

[Close]

BLAST of IVF0015889 vs. NCBI nr
Match: KAA0056673.1 (uncharacterized protein E6C27_scaffold288G002080 [Cucumis melo var. makuwa])

HSP 1 Score: 158 bits (399), Expect = 1.33e-47
Identity = 77/78 (98.72%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 1  MLFRGKCEIRWISESRVGNEAEDSEKDEKDNDGRDRDVVYASSSMPSSPKNALIPTRCRF 60
          MLFRGKCEIRWISES VGNEAEDSEKDEKDNDGRDRDVVYASSSMPSSPKNALIPTRCRF
Sbjct: 1  MLFRGKCEIRWISESHVGNEAEDSEKDEKDNDGRDRDVVYASSSMPSSPKNALIPTRCRF 60

Query: 61 TPNHSSFNENRYQSSSIT 78
          TPNHSSFNENRYQSSSIT
Sbjct: 61 TPNHSSFNENRYQSSSIT 78

The following BLAST results are available for this feature:

BLAST of IVF0015889 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0015889 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DUF5	1.1e-41	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7V7N3	7.0e-41	97.80	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7UKV8	2.0e-40	97.80	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7SWM4	5.0e-39	95.56	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7UL90	9.9e-35	98.72	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of IVF0015889 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0039167.1	1.58e-57	100.00	uncharacterized protein E6C27_scaffold121G00700 [Cucumis melo var. makuwa] >KAA0...	[more]
KAA0061741.1	1.84e-56	97.80	uncharacterized protein E6C27_scaffold212G001160 [Cucumis melo var. makuwa]	[more]
KAA0054315.1	7.52e-56	97.80	uncharacterized protein E6C27_scaffold24G00360 [Cucumis melo var. makuwa] >TYK12...	[more]
KAA0035440.1	6.13e-54	95.56	uncharacterized protein E6C27_scaffold285G00630 [Cucumis melo var. makuwa]	[more]
KAA0056673.1	1.33e-47	98.72	uncharacterized protein E6C27_scaffold288G002080 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0015889 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..79
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..37
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0015889.1	IVF0015889.1	mRNA