IVF0015846 (gene) Melon (IVF77) v1

Overview


Name	IVF0015846
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr11: 18716433 .. 18716769 (+)
RNA-Seq Expression	IVF0015846
Synteny	IVF0015846

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGATGAACACTAAACTTGCAAACAGAAGAATCCCAGCAACAAAACGAAAAGAGAACCTATCCAAGATTTGTATGAACCAATTAATTCCAAGAAATATAGAACAAGAAACGGAAAGAACTTACAATTACGTATGGAATTAGAGAAAGTAGGGAAGTGAAAAGAGATTTCAATTTGAAGATGGGTATTCAGATTCTCAAAATTAGAGCCTCCTTTTACACAGCGCAAGAACAAACAACCCTCATCTCCTTCCCCAAATCCAATCCAAAGCCCACCGGAGCCGAGGAGAGAAGTGACAAAGAGTTTGAGGAGAACAACGATAACGGTGTCCGTTAA

mRNA sequence

ATGGGGATGAACACTAAACTTGCAAACAGAAGAATCCCAGCAACAAAACGAAAAGAGAACCTATCCAAGATTTGTATGAACCAATTAATTCCAAGAAATATAGAACAAGAAACGGAAAGAACTTACAATTACATGGGTATTCAGATTCTCAAAATTAGAGCCTCCTTTTACACAGCGCAAGAACAAACAACCCTCATCTCCTTCCCCAAATCCAATCCAAAGCCCACCGGAGCCGAGGAGAGAAGTGACAAAGAGTTTGAGGAGAACAACGATAACGGTGTCCGTTAA

Coding sequence (CDS)

ATGGGGATGAACACTAAACTTGCAAACAGAAGAATCCCAGCAACAAAACGAAAAGAGAACCTATCCAAGATTTGTATGAACCAATTAATTCCAAGAAATATAGAACAAGAAACGGAAAGAACTTACAATTACATGGGTATTCAGATTCTCAAAATTAGAGCCTCCTTTTACACAGCGCAAGAACAAACAACCCTCATCTCCTTCCCCAAATCCAATCCAAAGCCCACCGGAGCCGAGGAGAGAAGTGACAAAGAGTTTGAGGAGAACAACGATAACGGTGTCCGTTAA

Protein sequence

MGMNTKLANRRIPATKRKENLSKICMNQLIPRNIEQETERTYNYMGIQILKIRASFYTAQEQTTLISFPKSNPKPTGAEERSDKEFEENNDNGVR

Homology

[Close]

BLAST of IVF0015846 vs. ExPASy TrEMBL
Match: A0A0A0KBT6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G191530 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 3.4e-30
Identity = 82/112 (73.21%), Postives = 88/112 (78.57%), Query Frame = 0


Query: 1   MGMNTKLANRRIPATKRKENLSKICMNQLIPRNIE---------------QETERTYNY- 60
           M MN KLANRRIPATK KENLSKICMNQLI RNI+               +ET+R +N  
Sbjct: 1   MEMNNKLANRRIPATKGKENLSKICMNQLIRRNIDKKRKELTITYGIRESRETKRDFNLK 60

Query: 61  MGIQILKIRASFYTAQEQTTLISFPKSNPKPTGAE-ERSDKEFEENNDNGVR 96
           MGIQILKI ASFYTA++QTTLISFPKSNPKPTGAE ERSDKEFEENNDNGVR
Sbjct: 61  MGIQILKITASFYTAEKQTTLISFPKSNPKPTGAEKERSDKEFEENNDNGVR 112

[Close]

BLAST of IVF0015846 vs. NCBI nr
Match: KGN47165.1 (hypothetical protein Csa_020766 [Cucumis sativus])

HSP 1 Score: 140 bits (353), Expect = 7.37e-41
Identity = 82/112 (73.21%), Postives = 88/112 (78.57%), Query Frame = 0


Query: 1   MGMNTKLANRRIPATKRKENLSKICMNQLIPRNIEQ---------------ETERTYNY- 60
           M MN KLANRRIPATK KENLSKICMNQLI RNI++               ET+R +N  
Sbjct: 1   MEMNNKLANRRIPATKGKENLSKICMNQLIRRNIDKKRKELTITYGIRESRETKRDFNLK 60

Query: 61  MGIQILKIRASFYTAQEQTTLISFPKSNPKPTGAE-ERSDKEFEENNDNGVR 95
           MGIQILKI ASFYTA++QTTLISFPKSNPKPTGAE ERSDKEFEENNDNGVR
Sbjct: 61  MGIQILKITASFYTAEKQTTLISFPKSNPKPTGAEKERSDKEFEENNDNGVR 112

The following BLAST results are available for this feature:

BLAST of IVF0015846 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0015846 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KBT6	3.4e-30	73.21	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G191530 PE=4 SV=1	[more]

BLAST of IVF0015846 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN47165.1	7.37e-41	73.21	hypothetical protein Csa_020766 [Cucumis sativus]	[more]

BLAST of IVF0015846 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..95
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0015846.2	IVF0015846.2	mRNA