IVF0015812 (gene) Melon (IVF77) v1

Overview


Name	IVF0015812
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotransposon protein
Location	chr11: 8185914 .. 8186120 (-)
RNA-Seq Expression	IVF0015812
Synteny	IVF0015812

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCAGATAGCTGTGAGCTGGAGGACGCGATGGCGGCGCAGGTGATTGAGCTTATGGAGGCCATCTCGAACCTTACTATGGCGGAGAAGAGTAAGGGCATCATGATAGTGAATCAGAAGGTGTCACTCATGAGAAGCTTCATCAAGATGTTCGATTTGATGAAGGTCGCTTACTATAGGGTCATCCTTGGCAGTGACTGGTGA

mRNA sequence

ATGGCTGCAGATAGCTGTGAGCTGGAGGACGCGATGGCGGCGCAGGTGATTGAGCTTATGGAGGCCATCTCGAACCTTACTATGGCGGAGAAGAGTAAGGGCATCATGATAGTGAATCAGAAGGTGTCACTCATGAGAAGCTTCATCAAGATGTTCGATTTGATGAAGGTCGCTTACTATAGGGTCATCCTTGGCAGTGACTGGTGA

Coding sequence (CDS)

ATGGCTGCAGATAGCTGTGAGCTGGAGGACGCGATGGCGGCGCAGGTGATTGAGCTTATGGAGGCCATCTCGAACCTTACTATGGCGGAGAAGAGTAAGGGCATCATGATAGTGAATCAGAAGGTGTCACTCATGAGAAGCTTCATCAAGATGTTCGATTTGATGAAGGTCGCTTACTATAGGGTCATCCTTGGCAGTGACTGGTGA

Protein sequence

MAADSCELEDAMAAQVIELMEAISNLTMAEKSKGIMIVNQKVSLMRSFIKMFDLMKVAYYRVILGSDW

Homology

[Close]

BLAST of IVF0015812 vs. ExPASy TrEMBL
Match: A0A5D3BGZ9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold232G001460 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 5.3e-25
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 4   DSCELEDAMAAQVIELMEAISNLTMAEKSKGIMIVNQKVSLMRSFIKMFDLMKVAYYRVI 63
           DSCELEDAMAAQVIELMEAISNLTMAEKSKGIMIVNQKVSLMRSFIKMFDLMKVAYYRVI
Sbjct: 93  DSCELEDAMAAQVIELMEAISNLTMAEKSKGIMIVNQKVSLMRSFIKMFDLMKVAYYRVI 152

Query: 64  LGSDW 69
           LGSDW
Sbjct: 153 LGSDW 157

[Close]

BLAST of IVF0015812 vs. ExPASy TrEMBL
Match: A0A5A7TYU4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G002690 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.9e-14
Identity = 48/59 (81.36%), Postives = 53/59 (89.83%), Query Frame = 0


Query: 9   EDAMAAQVIELMEAISNLTMAEKSKGIMIVNQKVSLMRSFIKMFDLMKVAYYRVILGSD 68
           ED MAAQVIEL++AISNLTMAEKSK +M+VNQKVSLMRSFIKM DLMK AY RV+LG D
Sbjct: 133 EDTMAAQVIELIKAISNLTMAEKSKCVMLVNQKVSLMRSFIKMPDLMKAAYCRVLLGGD 191

[Close]

BLAST of IVF0015812 vs. ExPASy TrEMBL
Match: A0A5A7T479 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G001300 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 4.6e-13
Identity = 45/59 (76.27%), Postives = 51/59 (86.44%), Query Frame = 0


Query: 9   EDAMAAQVIELMEAISNLTMAEKSKGIMIVNQKVSLMRSFIKMFDLMKVAYYRVILGSD 68
           EDAMAAQVIEL+EAI NLTMAEKS  +++VNQKVSLMRSFIKM D MK AY R++LG D
Sbjct: 117 EDAMAAQVIELIEAILNLTMAEKSNCVVLVNQKVSLMRSFIKMSDSMKAAYCRILLGGD 175

[Close]

BLAST of IVF0015812 vs. ExPASy TrEMBL
Match: A0A5D3B9T0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold104G00610 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.0e-12
Identity = 45/59 (76.27%), Postives = 51/59 (86.44%), Query Frame = 0


Query: 9   EDAMAAQVIELMEAISNLTMAEKSKGIMIVNQKVSLMRSFIKMFDLMKVAYYRVILGSD 68
           EDAMAAQVIEL+EAI NLTMAEKSK +M+VNQKVSLMRSFIKM D MK  Y R++LG +
Sbjct: 154 EDAMAAQVIELIEAIPNLTMAEKSKCVMLVNQKVSLMRSFIKMPDSMKAIYGRILLGGN 212

[Close]

BLAST of IVF0015812 vs. ExPASy TrEMBL
Match: A0A5D3DYD1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold403G001030 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.3e-10
Identity = 42/59 (71.19%), Postives = 50/59 (84.75%), Query Frame = 0


Query: 9   EDAMAAQVIELMEAISNLTMAEKSKGIMIVNQKVSLMRSFIKMFDLMKVAYYRVILGSD 68
           EDAM AQVIE M++I +LTMAEKSK ++IV +KVSLMR+FIKM D MKVAY RV+LG D
Sbjct: 140 EDAMEAQVIENMQSIPSLTMAEKSKCVVIVTEKVSLMRNFIKMSDPMKVAYCRVLLGYD 198

[Close]

BLAST of IVF0015812 vs. NCBI nr
Match: TYJ98397.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 122 bits (305), Expect = 1.86e-33
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 4   DSCELEDAMAAQVIELMEAISNLTMAEKSKGIMIVNQKVSLMRSFIKMFDLMKVAYYRVI 63
           DSCELEDAMAAQVIELMEAISNLTMAEKSKGIMIVNQKVSLMRSFIKMFDLMKVAYYRVI
Sbjct: 93  DSCELEDAMAAQVIELMEAISNLTMAEKSKGIMIVNQKVSLMRSFIKMFDLMKVAYYRVI 152

Query: 64  LGSDW 68
           LGSDW
Sbjct: 153 LGSDW 157

[Close]

BLAST of IVF0015812 vs. NCBI nr
Match: KAA0048148.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK08106.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 86.7 bits (213), Expect = 3.61e-19
Identity = 48/59 (81.36%), Postives = 53/59 (89.83%), Query Frame = 0


Query: 9   EDAMAAQVIELMEAISNLTMAEKSKGIMIVNQKVSLMRSFIKMFDLMKVAYYRVILGSD 67
           ED MAAQVIEL++AISNLTMAEKSK +M+VNQKVSLMRSFIKM DLMK AY RV+LG D
Sbjct: 133 EDTMAAQVIELIKAISNLTMAEKSKCVMLVNQKVSLMRSFIKMPDLMKAAYCRVLLGGD 191

[Close]

BLAST of IVF0015812 vs. NCBI nr
Match: KAA0038274.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 82.0 bits (201), Expect = 1.60e-17
Identity = 45/59 (76.27%), Postives = 51/59 (86.44%), Query Frame = 0


Query: 9   EDAMAAQVIELMEAISNLTMAEKSKGIMIVNQKVSLMRSFIKMFDLMKVAYYRVILGSD 67
           EDAMAAQVIEL+EAI NLTMAEKS  +++VNQKVSLMRSFIKM D MK AY R++LG D
Sbjct: 117 EDAMAAQVIELIEAILNLTMAEKSNCVVLVNQKVSLMRSFIKMSDSMKAAYCRILLGGD 175

[Close]

BLAST of IVF0015812 vs. NCBI nr
Match: KAA0033551.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ95636.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 80.9 bits (198), Expect = 9.56e-17
Identity = 45/59 (76.27%), Postives = 51/59 (86.44%), Query Frame = 0


Query: 9   EDAMAAQVIELMEAISNLTMAEKSKGIMIVNQKVSLMRSFIKMFDLMKVAYYRVILGSD 67
           EDAMAAQVIEL+EAI NLTMAEKSK +M+VNQKVSLMRSFIKM D MK  Y R++LG +
Sbjct: 154 EDAMAAQVIELIEAIPNLTMAEKSKCVMLVNQKVSLMRSFIKMPDSMKAIYGRILLGGN 212

[Close]

BLAST of IVF0015812 vs. NCBI nr
Match: TYK19822.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 73.6 bits (179), Expect = 1.50e-14
Identity = 41/54 (75.93%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 14  AQVIELMEAISNLTMAEKSKGIMIVNQKVSLMRSFIKMFDLMKVAYYRVILGSD 67
           AQVIEL+E I NLTMAEKSK I++VNQKVSLMRSFIKM D MKVAY R++ G D
Sbjct: 88  AQVIELIEVIPNLTMAEKSKCIVLVNQKVSLMRSFIKMSDSMKVAYCRILHGGD 141

The following BLAST results are available for this feature:

BLAST of IVF0015812 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0015812 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BGZ9	5.3e-25	100.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TYU4	1.9e-14	81.36	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7T479	4.6e-13	76.27	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3B9T0	1.0e-12	76.27	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DYD1	1.3e-10	71.19	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of IVF0015812 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ98397.1	1.86e-33	100.00	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0048148.1	3.61e-19	81.36	retrotransposon protein [Cucumis melo var. makuwa] >TYK08106.1 retrotransposon p...	[more]
KAA0038274.1	1.60e-17	76.27	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0033551.1	9.56e-17	76.27	retrotransposon protein [Cucumis melo var. makuwa] >TYJ95636.1 retrotransposon p...	[more]
TYK19822.1	1.50e-14	75.93	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0015812 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0015812.1	IVF0015812.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0035196	production of miRNAs involved in gene silencing by miRNA
biological_process	GO:1903730	regulation of phosphatidate phosphatase activity
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0046872	metal ion binding