IVF0015810 (gene) Melon (IVF77) v1

Overview


Name	IVF0015810
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotransposon protein
Location	chr02: 11152333 .. 11152667 (+)
RNA-Seq Expression	IVF0015810
Synteny	IVF0015810

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATCGACAAATTCAAAAGCCACTAAGCATCGGTGGACAACCATTGAGGATGAGGCGTTAGTTGAGTGCTTACTACAACTAGTAGAGGAATGTGGCTGGAGGGCTGATAATGGAACATTCAAACTGGGATATTTGGTACAAGTACAAAACTAATGACAGAAAAAATTCCTGAAAGCAACATACAAGTGACTCTAAATCTAGAATCGAGAGTAAAAATTTTAAAGAAGCAGTACACTGCCATAGCAGAGATGATGGGGCCAGCTTGTAGTGGGTTTGGCTGGAATGAGGAACGAAAGTGCATTGAGGCAGAGAAATCCGTGTTCGATGATTAG

mRNA sequence

ATGGCATCGACAAATTCAAAAGCCACTAAGCATCGGTGGACAACCATTGAGGATGAGGCGTTAGTTGAGTGCTTACTACAACTAGTAGAGGAATGTGGCTGGAGGGCTGATAATGGAACATTCAAACTGGGATATTTGGTACAAAAGCAGTACACTGCCATAGCAGAGATGATGGGGCCAGCTTGTAGTGGGTTTGGCTGGAATGAGGAACGAAAGTGCATTGAGGCAGAGAAATCCGTGTTCGATGATTAG

Coding sequence (CDS)

ATGGCATCGACAAATTCAAAAGCCACTAAGCATCGGTGGACAACCATTGAGGATGAGGCGTTAGTTGAGTGCTTACTACAACTAGTAGAGGAATGTGGCTGGAGGGCTGATAATGGAACATTCAAACTGGGATATTTGGTACAAAAGCAGTACACTGCCATAGCAGAGATGATGGGGCCAGCTTGTAGTGGGTTTGGCTGGAATGAGGAACGAAAGTGCATTGAGGCAGAGAAATCCGTGTTCGATGATTAG

Protein sequence

MASTNSKATKHRWTTIEDEALVECLLQLVEECGWRADNGTFKLGYLVQKQYTAIAEMMGPACSGFGWNEERKCIEAEKSVFDD

Homology

[Close]

BLAST of IVF0015810 vs. ExPASy TrEMBL
Match: A0A5A7T0P1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold57G002610 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 3.5e-39
Identity = 80/83 (96.39%), Postives = 81/83 (97.59%), Query Frame = 0


Query: 1   MASTNSKATKHRWTTIEDEALVECLLQLVEECGWRADNGTFKLGYLVQKQYTAIAEMMGP 60
           MASTNSKATKHRWTTIEDEALVECLLQLVEECGWRADNGTFKLGYL  KQYTAIAEMMGP
Sbjct: 52  MASTNSKATKHRWTTIEDEALVECLLQLVEECGWRADNGTFKLGYL--KQYTAIAEMMGP 111

Query: 61  ACSGFGWNEERKCIEAEKSVFDD 84
           ACSGFGWNE+RKCIEAEKSVFDD
Sbjct: 112 ACSGFGWNEKRKCIEAEKSVFDD 132

[Close]

BLAST of IVF0015810 vs. ExPASy TrEMBL
Match: A0A5D3C542 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G00540 PE=3 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 3.6e-36
Identity = 77/83 (92.77%), Postives = 77/83 (92.77%), Query Frame = 0


Query: 1   MASTNSKATKHRWTTIEDEALVECLLQLVEECGWRADNGTFKLGYLVQKQYTAIAEMMGP 60
           MASTNSKATKHRWTTIEDE LV CLLQLVEE GWRADNGTFK GYL  KQYTAIAEMMGP
Sbjct: 253 MASTNSKATKHRWTTIEDEVLVGCLLQLVEEGGWRADNGTFKPGYL--KQYTAIAEMMGP 312

Query: 61  ACSGFGWNEERKCIEAEKSVFDD 84
           ACSGFGWNEERKCIEAEKSVFDD
Sbjct: 313 ACSGFGWNEERKCIEAEKSVFDD 333

[Close]

BLAST of IVF0015810 vs. ExPASy TrEMBL
Match: A0A5D3C7T4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00330 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 1.8e-35
Identity = 75/83 (90.36%), Postives = 76/83 (91.57%), Query Frame = 0


Query: 1   MASTNSKATKHRWTTIEDEALVECLLQLVEECGWRADNGTFKLGYLVQKQYTAIAEMMGP 60
           MASTNSKATKHRWTTIEDE LVECLLQLVEE GWRADNGTFKLGYL  KQYTAIAEMMGP
Sbjct: 138 MASTNSKATKHRWTTIEDEVLVECLLQLVEEGGWRADNGTFKLGYL--KQYTAIAEMMGP 197

Query: 61  ACSGFGWNEERKCIEAEKSVFDD 84
           ACSGFGWNE +KCIE EK VFDD
Sbjct: 198 ACSGFGWNEGQKCIEVEKPVFDD 218

[Close]

BLAST of IVF0015810 vs. ExPASy TrEMBL
Match: A0A1S3CI24 (uncharacterized protein At2g29880-like OS=Cucumis melo OX=3656 GN=LOC103501201 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 4.0e-35
Identity = 76/83 (91.57%), Postives = 76/83 (91.57%), Query Frame = 0


Query: 1  MASTNSKATKHRWTTIEDEALVECLLQLVEECGWRADNGTFKLGYLVQKQYTAIAEMMGP 60
          MAST SKATKHRWTTIEDE LVECLLQLVEE GWRADNGTFK GYL  KQYTAIAEMMG 
Sbjct: 1  MASTYSKATKHRWTTIEDETLVECLLQLVEEGGWRADNGTFKPGYL--KQYTAIAEMMGQ 60

Query: 61 ACSGFGWNEERKCIEAEKSVFDD 84
          ACSGFGWNEERKCIEAEKSVFDD
Sbjct: 61 ACSGFGWNEERKCIEAEKSVFDD 81

[Close]

BLAST of IVF0015810 vs. ExPASy TrEMBL
Match: A0A5A7U7F7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G001200 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 3.8e-33
Identity = 79/111 (71.17%), Postives = 79/111 (71.17%), Query Frame = 0


Query: 1   MASTNSKATKHRWTTIEDEALVECLLQLVEECGWRADNGTFKLGYLVQ------------ 60
           MASTNSKATKHRWTTI DE LVECLLQLVEE GWRADNGTFKLGYLVQ            
Sbjct: 1   MASTNSKATKHRWTTI-DEVLVECLLQLVEEGGWRADNGTFKLGYLVQVQKLMKEKILGS 60

Query: 61  ----------------KQYTAIAEMMGPACSGFGWNEERKCIEAEKSVFDD 84
                           KQY AIAEMMGPACSGFGWNEERKCIEAEKSVFDD
Sbjct: 61  NIQVTPNLKSRVKILKKQYIAIAEMMGPACSGFGWNEERKCIEAEKSVFDD 110

[Close]

BLAST of IVF0015810 vs. NCBI nr
Match: KAA0035161.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 168 bits (425), Expect = 8.91e-52
Identity = 80/83 (96.39%), Postives = 81/83 (97.59%), Query Frame = 0


Query: 1   MASTNSKATKHRWTTIEDEALVECLLQLVEECGWRADNGTFKLGYLVQKQYTAIAEMMGP 60
           MASTNSKATKHRWTTIEDEALVECLLQLVEECGWRADNGTFKLGYL  KQYTAIAEMMGP
Sbjct: 52  MASTNSKATKHRWTTIEDEALVECLLQLVEECGWRADNGTFKLGYL--KQYTAIAEMMGP 111

Query: 61  ACSGFGWNEERKCIEAEKSVFDD 83
           ACSGFGWNE+RKCIEAEKSVFDD
Sbjct: 112 ACSGFGWNEKRKCIEAEKSVFDD 132

[Close]

BLAST of IVF0015810 vs. NCBI nr
Match: XP_008462939.1 (PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo])

HSP 1 Score: 154 bits (390), Expect = 1.58e-45
Identity = 76/83 (91.57%), Postives = 76/83 (91.57%), Query Frame = 0


Query: 1  MASTNSKATKHRWTTIEDEALVECLLQLVEECGWRADNGTFKLGYLVQKQYTAIAEMMGP 60
          MAST SKATKHRWTTIEDE LVECLLQLVEE GWRADNGTFK GYL  KQYTAIAEMMG 
Sbjct: 1  MASTYSKATKHRWTTIEDETLVECLLQLVEEGGWRADNGTFKPGYL--KQYTAIAEMMGQ 60

Query: 61 ACSGFGWNEERKCIEAEKSVFDD 83
          ACSGFGWNEERKCIEAEKSVFDD
Sbjct: 61 ACSGFGWNEERKCIEAEKSVFDD 81

[Close]

BLAST of IVF0015810 vs. NCBI nr
Match: TYK06362.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 158 bits (399), Expect = 3.00e-44
Identity = 77/83 (92.77%), Postives = 77/83 (92.77%), Query Frame = 0


Query: 1   MASTNSKATKHRWTTIEDEALVECLLQLVEECGWRADNGTFKLGYLVQKQYTAIAEMMGP 60
           MASTNSKATKHRWTTIEDE LV CLLQLVEE GWRADNGTFK GYL  KQYTAIAEMMGP
Sbjct: 253 MASTNSKATKHRWTTIEDEVLVGCLLQLVEEGGWRADNGTFKPGYL--KQYTAIAEMMGP 312

Query: 61  ACSGFGWNEERKCIEAEKSVFDD 83
           ACSGFGWNEERKCIEAEKSVFDD
Sbjct: 313 ACSGFGWNEERKCIEAEKSVFDD 333

[Close]

BLAST of IVF0015810 vs. NCBI nr
Match: TYK07921.1 (hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa])

HSP 1 Score: 155 bits (393), Expect = 9.43e-44
Identity = 75/83 (90.36%), Postives = 76/83 (91.57%), Query Frame = 0


Query: 1   MASTNSKATKHRWTTIEDEALVECLLQLVEECGWRADNGTFKLGYLVQKQYTAIAEMMGP 60
           MASTNSKATKHRWTTIEDE LVECLLQLVEE GWRADNGTFKLGYL  KQYTAIAEMMGP
Sbjct: 138 MASTNSKATKHRWTTIEDEVLVECLLQLVEEGGWRADNGTFKLGYL--KQYTAIAEMMGP 197

Query: 61  ACSGFGWNEERKCIEAEKSVFDD 83
           ACSGFGWNE +KCIE EK VFDD
Sbjct: 198 ACSGFGWNEGQKCIEVEKPVFDD 218

[Close]

BLAST of IVF0015810 vs. NCBI nr
Match: KAA0050106.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 148 bits (373), Expect = 3.17e-42
Identity = 79/111 (71.17%), Postives = 79/111 (71.17%), Query Frame = 0


Query: 1   MASTNSKATKHRWTTIEDEALVECLLQLVEECGWRADNGTFKLGYLVQ------------ 60
           MASTNSKATKHRWTTI DE LVECLLQLVEE GWRADNGTFKLGYLVQ            
Sbjct: 1   MASTNSKATKHRWTTI-DEVLVECLLQLVEEGGWRADNGTFKLGYLVQVQKLMKEKILGS 60

Query: 61  ----------------KQYTAIAEMMGPACSGFGWNEERKCIEAEKSVFDD 83
                           KQY AIAEMMGPACSGFGWNEERKCIEAEKSVFDD
Sbjct: 61  NIQVTPNLKSRVKILKKQYIAIAEMMGPACSGFGWNEERKCIEAEKSVFDD 110

The following BLAST results are available for this feature:

BLAST of IVF0015810 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0015810 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T0P1	3.5e-39	96.39	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3C542	3.6e-36	92.77	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3C7T4	1.8e-35	90.36	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CI24	4.0e-35	91.57	uncharacterized protein At2g29880-like OS=Cucumis melo OX=3656 GN=LOC103501201 P...	[more]
A0A5A7U7F7	3.8e-33	71.17	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of IVF0015810 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0035161.1	8.91e-52	96.39	retrotransposon protein [Cucumis melo var. makuwa]	[more]
XP_008462939.1	1.58e-45	91.57	PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo]	[more]
TYK06362.1	3.00e-44	92.77	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK07921.1	9.43e-44	90.36	hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa]	[more]
KAA0050106.1	3.17e-42	71.17	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0015810 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 47..83 coord: 2..47
None	No IPR available	PANTHER	PTHR46250:SF3	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN	coord: 47..83 coord: 2..47

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0015810.1	IVF0015810.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding