IVF0015751 (gene) Melon (IVF77) v1

Overview


Name	IVF0015751
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr05: 26609681 .. 26612124 (-)
RNA-Seq Expression	IVF0015751
Synteny	IVF0015751

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGCTCTGTTTGTTTGCGAGTTGCGATCCTTCAAGGTCGTCATTTATTTTGTTGCAAGCTTCAGTTGGGTTTGTGGACCATATTTTTTATTATTGTTATTATAGAATTTAGGTTTATTGGTGAGGCTTTTAGGTAGAAAACCCTTGTAACTAATGGAATAGTAATGATAATATCTCAAATATATGTATATTTCAAGAGCTTTACCCACACCGGAAACTGAAAGTTAAAGCCCTTTCTTTTTTTGTTTATATCGTATCCTCAATGCTTTTGCCGCCGAAAATCCCCAATCCCAAACTCATACTCCCATTTCCTCTTTTTCCCAAATATTCTCCTCGCCTATAATTATCAATTCCAAATCATTTCCCAACTTTCTAAATCCTAAATAAAAAATCAGGTTACTTTTTATAATCTATTTTATTTCTATATTTTTGTTGGATGTCAAAAATCTAAACATAATAAATGTATCTAATAGGAGAATAATGGGATCTATTGTCCATTGATATCTCCATTACGTTTAAGTAGGAATCAATAATCTTAGACATTCCTTTCTATTGTTAAAGAATTGGACATGATGTAGCGCATTCATTTCAATTGTGAATTTCCTCAAAGGAAAAAAAAGTCAAATTAGTTGTCATTTTGAAGGAAGTTTATTAATCTACACCTCTCCTCGTGGTATTACCAAATTTCTTCCAAATATAATTAATGATGAGAACTGAGAGATTGTCAAAATTGGAGTTTTAGTACATTCCATTAATAAGGAAACGAAGGAAGAGAAAAAAAACGTTGCAAGTGTTTTTTTATTTATCATTTAAATGTTTGAGAGTAAAGAAAAAAGTAAAATGATTTCCCATGGTTTAGTGGAGGGGACAATTAAAGAAAGCCAAACAACTTTTCTAATTTTTTCCTTTTGCAAAAACAGATATTACAAACAAATGCAATAAATTTGAGAGGAACTTTGAATTTGAATCATATTCCACGTGGCGGATGTACAAGTGTTTGGAAAAGTCAAGATTTGGATCTTAATATATATATAAACATAGAACCAATCCCCTCCTAATTTCATGAATGCGGCAGAAATGGAAATAATAAATAGGAAATAACAGATGGGGATATTTCAATATTAAATTTTTATTATTATTTTAGGGGTCCGTCTACAAGCGTGACTGTCAAATCTATATATTCTCTCTCTCTCTCTCTCTATCTGTTTTATTATTATTATTATTATTATTATTATTTAGTTTAATTAGTTTATTTATTTGTCCATCTCTTTCTCTTACTCTCTATCTAGATTTCTCAGAAGAGGTGTCTGTTCCGGAGATTCGATTTAATCGGCGATCTTTTTCCACTGCTCCTCGTGAATCAGACTCCTCTTCCTCCTTCTCTCCCTACAATATAATGTTCCAGATTTTCAAGGTACATCTTTTCTTTTTTAACGCATAATTTTCTTTTATTTTCACACCTTTCAAATTTTGCAATTATTACATAATAATCAAACTAAACAAACACCATTTTTTTTCTTCCCCTTTCCTTAGAAAATTAAAAAAAAAAAAAAAAAAAAAAAAACTGCGAGTGTCCGTGTTTTTGTTTGTAATTTTACTTAGTTGTACATACACTAAGATCTTCTATTTTAGATAGTTTTAGAAAAGAAAAAGAAAACAATTGATTAATTTTGGTGTCCCCAGGTAGCGCCTGCAGTCATTAAATTATCTTCCCCTTTTAGTCCTTTAATATTCTGAAAAGAATTTGAGATTGTTCTTTGATTATTTCTTCTGCTTTGTCTGAATTTGAATTAATACAGTACCCATTCATATTTTGCTTAAATTAAATGGGGGATTCTCCCTCTTTTTATTCTTTTTAAATAAACATAGTAGTTTGTTTATATGTTTACGAATTTCAAATATTTTTAATTAGAAATATAGAATATTAGATGATAATGGTGTGGGTGTTGTTGCCTTGGCTTCTCTGCATCATTGACTGGGTTCTTTAGTACTGTTTGAAGAGATTCTGAGCTCTAGAAGGGTATTCTCTCAGTACATTAAGAAAAAAAAAAGTTCCTTTTTATGGAAATGAGAATGGGATCTGCTTTTTCTTTCTACTTCTCATTATCGAGTAATAATAAAAAAAAAAAAATTGTTTGTTTACATTAATAATAATTTCTCTCCTCTCATCATCCATGGAAATGGAGGTGATGATTTCTGCTACAGTTCTTGTCTCATGTGCAGAAACCCGTTTTCTTTTTTTTAGTTTTTTCCCCCTCTGTTTGGGGGTCATGTTAGTGAAAGATTGTACAGATAAAGAAGATATGATTATGGTCGTTCATTATTATTATTTAAAAAAAAAAAAAAACATGCATGTGTTGAATTAAATTATGCAAATTGTAACTAAAAAACTCATATTTTTTTTATTTATTTAAAAAAGGATTATTATTGGGGAAGTGATTGA

mRNA sequence

ATGTGCTCTGTTTGTTTGCGAGTTGCGATCCTTCAAGGTCGTCATTTATTTTGTTGCAAGCTTCAGTTGGATTTCTCAGAAGAGGTGTCTGTTCCGGAGATTCGATTTAATCGGCGATCTTTTTCCACTGCTCCTCGTGAATCAGACTCCTCTTCCTCCTTCTCTCCCTACAATATAATGTTCCAGATTTTCAAGGATTATTATTGGGGAAGTGATTGA

Coding sequence (CDS)

ATGTGCTCTGTTTGTTTGCGAGTTGCGATCCTTCAAGGTCGTCATTTATTTTGTTGCAAGCTTCAGTTGGATTTCTCAGAAGAGGTGTCTGTTCCGGAGATTCGATTTAATCGGCGATCTTTTTCCACTGCTCCTCGTGAATCAGACTCCTCTTCCTCCTTCTCTCCCTACAATATAATGTTCCAGATTTTCAAGGATTATTATTGGGGAAGTGATTGA

Protein sequence

MCSVCLRVAILQGRHLFCCKLQLDFSEEVSVPEIRFNRRSFSTAPRESDSSSSFSPYNIMFQIFKDYYWGSD

Homology

[Close]

BLAST of IVF0015751 vs. ExPASy TrEMBL
Match: A0A0A0LKL4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000200 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 5.2e-23
Identity = 61/72 (84.72%), Postives = 62/72 (86.11%), Query Frame = 0


Query: 1  MCSVCLRVAILQGRHLFCCKLQLDFSEEVSVPEIRFNRRSFSTAPRESDSSSSFSPYNIM 60
          M S CLRVA LQGRHLF  +   DFSEEVS PEIRFNRRSFSTAPRESDSSSSFSPYNIM
Sbjct: 1  MHSGCLRVASLQGRHLFFLQAS-DFSEEVSAPEIRFNRRSFSTAPRESDSSSSFSPYNIM 60

Query: 61 FQIFKDYYWGSD 73
          FQIFKD YWGSD
Sbjct: 61 FQIFKDCYWGSD 71

[Close]

BLAST of IVF0015751 vs. NCBI nr
Match: KGN60511.1 (hypothetical protein Csa_019415 [Cucumis sativus])

HSP 1 Score: 115 bits (288), Expect = 7.01e-32
Identity = 60/70 (85.71%), Postives = 61/70 (87.14%), Query Frame = 0


Query: 3  SVCLRVAILQGRHLFCCKLQLDFSEEVSVPEIRFNRRSFSTAPRESDSSSSFSPYNIMFQ 62
          S CLRVA LQGRHLF  +   DFSEEVS PEIRFNRRSFSTAPRESDSSSSFSPYNIMFQ
Sbjct: 3  SGCLRVASLQGRHLFFLQAS-DFSEEVSAPEIRFNRRSFSTAPRESDSSSSFSPYNIMFQ 62

Query: 63 IFKDYYWGSD 72
          IFKD YWGSD
Sbjct: 63 IFKDCYWGSD 71

The following BLAST results are available for this feature:

BLAST of IVF0015751 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0015751 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LKL4	5.2e-23	84.72	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000200 PE=4 SV=1	[more]

BLAST of IVF0015751 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN60511.1	7.01e-32	85.71	hypothetical protein Csa_019415 [Cucumis sativus]	[more]

BLAST of IVF0015751 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0015751.1	IVF0015751.1	mRNA