IVF0015716 (gene) Melon (IVF77) v1

Overview


Name	IVF0015716
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	50S ribosomal protein L13
Location	chr07: 3084067 .. 3087579 (+)
RNA-Seq Expression	IVF0015716
Synteny	IVF0015716

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAATAGTCCCAATGTAGAAGAGAAGTAGTGTTGCGCAAATTTATCCACTCCCCCCGGTTTCCCATTTCTCATCTCCGTATTCACAAAGCCTAGAAAGAGTCTTATCCACAATCCATAGCACCAATTCCCCAACTGAAAGAGCCACTGCCAGAGCTACAATGGCGATGCTCTGTGCTTCCTCCTCTACACCCACTTTCTCTTTACATTCCTCTCTCACCAATGGAACCACAAGTAACAGAAGCATTCCCACAAACTCACTCCTTGTTGCCTTTCCACTCCCACATTCAAAATCTTCTTTTCTTCTACCCAGACCACCATTCCTCTAACCTCCAACTCCAAGAGGTCGGCCCTTCGAGTGCGAGCTCAAGAGCTGGATCGTGTCCCTTTGGAACAACGGTGGATGTTCGAGGGCGACGAGCTCGACGGCCCTGTACGTCTGTAGATCATACAATATTTTTATTTGTTTGCGCTAAGTTGGTATTGTGGGTTTGAGACTAATTGAACTCGTTCTTTGCATAAGACGTTAATGGGTTCCTATTAAACCTAAAACGCTAATGGGTTATTGTTTGTTGTTTCTTTTGGAGCTGTTACATCAAACATTTGGCTTCTCCGCATTAGCAATGTCTCTTTCCGTTGATATATTGAAGTTATTTTCACAGAAACTATCAACAAAAAAACTGGTTACAAGTATAATTGTTCTTATGACTGAACATACAAACCTCTTTCTGATTGTTAGGCCTATTTGATATGCCAATTCTCTGAATCTTGAAGAATTATTTCCTGTTTTAGCTAGCTGTTTGTTTATTTTTAATTTTCAGATTGGATTCTTAGTAGTCGTTATTCTTTTCCATTCAGGATATATGGAATAAAACGTGGTACCCGAAGGCTGCAGATCATGTGAACACAGAAAAACCTTGGTATGTGGTTGATGCCACTGATAAGATTTTGGGAAGACTAGCTTCGACCATTGCCAATCATATCCGAGGGAAGGATTTGCCAACCTATACTCCTAGTGTGGATATGGGGGCTTTTGTGATTGTGGTATGTGGCTGTACTTGTACATAATGTTTTAGCTACAATCACTACAGCATTGATTGCACTTTTATCTACTCAACTTGAACTTTCTTGCTATTTGTTTTCATTTAGTTGCTTATTCATTATAACCCATGAATTATACTTAGGTAAATGCAGAAAAAGTTGCGGTGTCTGGTAAAAAGAGGACTCAGAAACTATACAGGAGGCATTCAGGGCGACCGGGTGGTATGACTGTAGAAACTTTTGACCAGCTACAGCAGAGAATTCCTGAAAGAATTATCGAGCATGCTGTTCGTGGTATGCTTCCAAAAGGGAGGGTAAGTGGTTCCTTCTACTCAAGTGCCATATTGATATGCACGCAGACTGCAAACTGAATATTTGTGGGTGATAAGTGATTGTTTAAGTTTAAAGTGACACTCCATTTAGGAAAATTGCGTCAAAAGATTATGCGGAAAGTATATTTTCTGCTCCATTTGGTTGATCAGTTTTGTTAGAAGATTTAGTTAGTTCCTTCTATCCGGTCTGGTCTCGATCAAGGATCTCCGTCTTCCAGCCCTAGGATTTGAAGGGAGGTCTTGAACTCTAGGCTTTCTTTGTTGTTGGATAGGCTTTCTGTTAATTCCCCTTTCATTTAAGCTTTTTCATTGCATTGCCAAGGAGGCTTCTTCTTCTTTCTTTTACGACGAATCCGGCAAGCTAAAATCCTTTCTTCTCTGATTGCTTGAATACAAAAGTTCAGGAATTCAGAAATTCAGAAATCCAAAAGTTGGAAAGGTTGGGTTGGTCTTATGAAGTGAGGATGCAATCCTCCTAAACCTACCAGTATGGAAACACATAACCTGATGTTCGGTTAAGATAGCTTTTGGTGTTTTGGTTGCGGTAGTGTAGACTATTGGTTAGCTATGTTCCATCTTACAGAAGAGTTCCTCAAACTCATCACCAATGGGGTTTTACAGCTTCAAATTCAAATTTAAGTTGTTCCGATGGTTCTCACACTCTACAACATAGGATTCTAGAAGCAACGAGTTGATGTATGGCAAATAATCGTGTTTTTCAGTTCATTAGAAGAATCTCCAATTATAAGAAAATAAGATTTCTGGTGGCCTTTCAAATCTCTTCAAGAGGATTTCAGAACTTGGATTGTAATTTGTTAGGTTAACCATGTGGAGGATGTGACAAGACCGAGTTGCTTGGGAAATTTTGAAGTGTTTGAGAACCAAACATATGGTCTTTTGCTTTATTCCTTGGCTAATCTACCGGCAATCTGTTGGTTACATTTAGTAGTAAATATCTTTGGCCCTTTAAGTCATACTGGCAAAACTAGAGTTGAAGACCTATACGGTTGATTGAGTCTGACAACTGTGTTGGATGATTTCTTGGCAATTCAGGACCAGGAAAGCTAAAAAAGTTGCTTTAGCTGTGGATTTTGAAATTTTTTGGTTGTCGTTTGAACTACAATCATTGATTTGAAAATTTCATACTTTCTATACACCTAGTATATGTATTAGGAAATCAACAATTAACAATACAAAAAACGTATAGAGATCAACATAGAGATATACGTGGTTTACTAACAATGTATTAGCTACGTCCATGGAGCAAAGGGAGAACAATTTATTAGAGAAAATTTTTCACACAAGACGACGCCATTGGGTTAGTGACTATATATTTTACTTCTCTAAACCCTAGGTTTAGTGAGACCACCATACTAGGTTTATCTGGGTATAACCGTATAAGATAGCTTTATCTTAAGTTTCAGCTCTCCAAGAATGATGCAGCAAAATAAAATCTACGTTATGAAAAAGGAACAACTTTTCGTAAAGAAAATCAAACAGCCCTGCTTCTGCATCATCCTTTGAACAACTTCTTCGTGACAAACAGTTAGTTGTTTATGATGCGGTGTATTATGACATAGGAATTTCTCGTTGTCAGTGCTTTGACATGACGTGGATGAAACTGTTCTTTAGACTTTTTTCAAGTAGCTATGAAGTAATTGCGGTGCTTGAAATACTCATCTTACTTTTTATTTCCTGTAAACTGCTCCATATTGTGTGTATACGAGTTCCCTGTTTCCTGCCTCCATTTATGTTCCTGATAGTTTATTGGGTGTTTGAAACCATGGCAATTTATGTGCAGCTTGGAAGAGCACTCTTTAACCACTTGAAGGTTTACAAAGGACCAGACCATCCACACGAGGCACAAAAGCCAGTTGAGCTGCCAATTAGGGACAAAAGGATAAACAAAGAAAGATAGTATATGAACTACTAAGAGCAAACAATGGACGAAGAGACAACGCTCTCTTGTATGAGGTTTTCTATGTTCATATAATCGAGTTAGAGTTTCCATGCTTCAACTCAATTTGATATCAGCATTTGTTCTGTAATTTGATTTCAAATTCTAGTATCTTAATCCAAAGTTGCGTTTGCAAAGTTATTAAATCAGAAGAGGAAATCCTTAAATCTTGCCCGGTTAAAGG

mRNA sequence

AAAAATAGTCCCAATGTAGAAGAGAAGTAGTGTTGCGCAAATTTATCCACTCCCCCCGGTTTCCCATTTCTCATCTCCGTATTCACAAAGCCTAGAAAGAGTCTTATCCACAATCCATAGCACCAATTCCCCAACTGAAAGAGCCACTGCCAGAGCTACAATGGCGATGCTCTGTGCTTCCTCCTCTACACCCACTTTCTCTTTACATTCCTCTCTCACCAATGGAACCACAAGTAACAGAAGCATTCCCACAAACTCACTCCTTGTTGCCTTTCCACTCCCACATTCAAAATCTTCTTTTCTTCTACCCAGACCACCATTCCTCTAACCTCCAACTCCAAGAGGTCGGCCCTTCGAGTGCGAGCTCAAGAGCTGGATCGTGTCCCTTTGGAACAACGGTGGATGTTCGAGGGCGACGAGCTCGACGGCCCTGATATATGGAATAAAACGTGGTACCCGAAGGCTGCAGATCATGTGAACACAGAAAAACCTTGGTATGTGGTTGATGCCACTGATAAGATTTTGGGAAGACTAGCTTCGACCATTGCCAATCATATCCGAGGGAAGGATTTGCCAACCTATACTCCTAGTGTGGATATGGGGGCTTTTGTGATTGTGGTAAATGCAGAAAAAGTTGCGGTGTCTGGTAAAAAGAGGACTCAGAAACTATACAGGAGGCATTCAGGGCGACCGGGTGGTATGACTGTAGAAACTTTTGACCAGCTACAGCAGAGAATTCCTGAAAGAATTATCGAGCATGCTGTTCGTGGTATGCTTCCAAAAGGGAGGCTTGGAAGAGCACTCTTTAACCACTTGAAGGTTTACAAAGGACCAGACCATCCACACGAGGCACAAAAGCCAGTTGAGCTGCCAATTAGGGACAAAAGGATAAACAAAGAAAGATAGTATATGAACTACTAAGAGCAAACAATGGACGAAGAGACAACGCTCTCTTGTATGAGGTTTTCTATGTTCATATAATCGAGTTAGAGTTTCCATGCTTCAACTCAATTTGATATCAGCATTTGTTCTGTAATTTGATTTCAAATTCTAGTATCTTAATCCAAAGTTGCGTTTGCAAAGTTATTAAATCAGAAGAGGAAATCCTTAAATCTTGCCCGGTTAAAGG

Coding sequence (CDS)

ATGTTCGAGGGCGACGAGCTCGACGGCCCTGATATATGGAATAAAACGTGGTACCCGAAGGCTGCAGATCATGTGAACACAGAAAAACCTTGGTATGTGGTTGATGCCACTGATAAGATTTTGGGAAGACTAGCTTCGACCATTGCCAATCATATCCGAGGGAAGGATTTGCCAACCTATACTCCTAGTGTGGATATGGGGGCTTTTGTGATTGTGGTAAATGCAGAAAAAGTTGCGGTGTCTGGTAAAAAGAGGACTCAGAAACTATACAGGAGGCATTCAGGGCGACCGGGTGGTATGACTGTAGAAACTTTTGACCAGCTACAGCAGAGAATTCCTGAAAGAATTATCGAGCATGCTGTTCGTGGTATGCTTCCAAAAGGGAGGCTTGGAAGAGCACTCTTTAACCACTTGAAGGTTTACAAAGGACCAGACCATCCACACGAGGCACAAAAGCCAGTTGAGCTGCCAATTAGGGACAAAAGGATAAACAAAGAAAGATAG

Protein sequence

MFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIRDKRINKER

Homology

[Close]

BLAST of IVF0015716 vs. ExPASy Swiss-Prot
Match: Q9SYL9 (50S ribosomal protein L13, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL13 PE=2 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 2.8e-85
Identity = 147/167 (88.02%), Postives = 160/167 (95.81%), Query Frame = 0


Query: 1   MFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTY 60
           MF+ +E +GPDIWN TWYPKA+DHVNT+KPW+VVDATDKILGRLASTIANHIRGK+L +Y
Sbjct: 75  MFDEEEANGPDIWNTTWYPKASDHVNTDKPWFVVDATDKILGRLASTIANHIRGKNLASY 134

Query: 61  TPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHA 120
           TPSVDMGAFVIVVNAEKVAVSGKKR QKLYRRHSGRPGGMTVETFDQLQQRIPERI+EHA
Sbjct: 135 TPSVDMGAFVIVVNAEKVAVSGKKRNQKLYRRHSGRPGGMTVETFDQLQQRIPERIVEHA 194

Query: 121 VRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIRDKRINKER 168
           VRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKP++LPIRDKRI  ++
Sbjct: 195 VRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPLDLPIRDKRIQLQK 241

[Close]

BLAST of IVF0015716 vs. ExPASy Swiss-Prot
Match: P12629 (50S ribosomal protein L13, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL13 PE=1 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 1.4e-76
Identity = 135/167 (80.84%), Postives = 151/167 (90.42%), Query Frame = 0


Query: 1   MFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTY 60
           MF  +E  GPDIWN TWYPK+ADHV T+K WYVVDATD ILGR+ASTIA HIRGK+L +Y
Sbjct: 84  MFTLEEATGPDIWNTTWYPKSADHVPTDKKWYVVDATDLILGRMASTIAIHIRGKNLASY 143

Query: 61  TPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHA 120
           TPSVDMGAFVIVVNA+KVAVSGKKRTQKLYRRHSGRPGG+  ETFDQLQ+RIPERIIEHA
Sbjct: 144 TPSVDMGAFVIVVNADKVAVSGKKRTQKLYRRHSGRPGGLKEETFDQLQKRIPERIIEHA 203

Query: 121 VRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIRDKRINKER 168
           VRGMLPKGRLGR LFNHLKVYKG +HPH+AQ+P++LP+RDKRI  E+
Sbjct: 204 VRGMLPKGRLGRYLFNHLKVYKGAEHPHQAQQPIDLPLRDKRIRVEK 250

[Close]

BLAST of IVF0015716 vs. ExPASy Swiss-Prot
Match: B8HMT1 (50S ribosomal protein L13 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) OX=395961 GN=rplM PE=3 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 1.0e-50
Identity = 99/146 (67.81%), Postives = 114/146 (78.08%), Query Frame = 0


Query: 14  NKTWYPKAADHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVV 73
           NKT+ P      + E  WYVVDAT++ LGRLA+ IA  +RGK  P YTPS+D G FVIVV
Sbjct: 2   NKTYLPST---TSLEPKWYVVDATEQHLGRLATQIAMILRGKTKPIYTPSMDTGDFVIVV 61

Query: 74  NAEKVAVSGKKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRA 133
           NAEKVAV+GKKRTQK+YRRHSGRPGGM  ETF +LQ R+PERIIEHAV+GMLPK  LGR 
Sbjct: 62  NAEKVAVTGKKRTQKIYRRHSGRPGGMKTETFAKLQSRLPERIIEHAVKGMLPKNTLGRN 121

Query: 134 LFNHLKVYKGPDHPHEAQKPVELPIR 160
           LF  LKVY GPDHPH+AQKP  L ++
Sbjct: 122 LFTKLKVYAGPDHPHQAQKPEVLTLK 144

[Close]

BLAST of IVF0015716 vs. ExPASy Swiss-Prot
Match: Q3MF94 (50S ribosomal protein L13 OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937) OX=240292 GN=rplM PE=3 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 2.3e-50
Identity = 100/145 (68.97%), Postives = 114/145 (78.62%), Query Frame = 0


Query: 14  NKTWYPKAADHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVV 73
           +KT+ P      + E+ WYVVDATDK LGRLAS IA  +RGK+   YTP +D G FVIVV
Sbjct: 2   SKTYLP---PQESLERDWYVVDATDKRLGRLASEIAMILRGKNKAHYTPHLDTGDFVIVV 61

Query: 74  NAEKVAVSGKKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRA 133
           NAEKVAV+GKKRTQKLYRRHSGRPGGM  ETF +LQQR+PERI+EHAV+GMLPK  LG+ 
Sbjct: 62  NAEKVAVTGKKRTQKLYRRHSGRPGGMKTETFAKLQQRLPERIVEHAVKGMLPKNSLGKQ 121

Query: 134 LFNHLKVYKGPDHPHEAQKPVELPI 159
           LF  LKVY GP HPH+AQKP EL I
Sbjct: 122 LFTKLKVYAGPTHPHDAQKPKELNI 143

[Close]

BLAST of IVF0015716 vs. ExPASy Swiss-Prot
Match: Q8YPK6 (50S ribosomal protein L13 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=rplM PE=3 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 6.6e-50
Identity = 99/145 (68.28%), Postives = 114/145 (78.62%), Query Frame = 0


Query: 14  NKTWYPKAADHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVV 73
           +KT+ P      + E+ WYVVDATDK LGRLAS IA  +RGK+   YTP +D G FVIVV
Sbjct: 2   SKTYLP---PQESLERDWYVVDATDKRLGRLASEIAMILRGKNKAHYTPHLDTGDFVIVV 61

Query: 74  NAEKVAVSGKKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRA 133
           NA+KVAV+GKKRTQKLYRRHSGRPGGM  ETF +LQQR+PERI+EHAV+GMLPK  LG+ 
Sbjct: 62  NAKKVAVTGKKRTQKLYRRHSGRPGGMKTETFAKLQQRLPERIVEHAVKGMLPKNSLGKQ 121

Query: 134 LFNHLKVYKGPDHPHEAQKPVELPI 159
           LF  LKVY GP HPH+AQKP EL I
Sbjct: 122 LFTKLKVYAGPTHPHDAQKPKELNI 143

[Close]

BLAST of IVF0015716 vs. ExPASy TrEMBL
Match: A0A1S3CK07 (50S ribosomal protein L13, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501842 PE=3 SV=1)

HSP 1 Score: 350.1 bits (897), Expect = 5.0e-93
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 1   MFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTY 60
           MFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTY
Sbjct: 82  MFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTY 141

Query: 61  TPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHA 120
           TPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHA
Sbjct: 142 TPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHA 201

Query: 121 VRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIRDKRINKER 168
           VRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIRDKRINKER
Sbjct: 202 VRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIRDKRINKER 248

[Close]

BLAST of IVF0015716 vs. ExPASy TrEMBL
Match: A0A0A0KZG1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G623380 PE=3 SV=1)

HSP 1 Score: 348.6 bits (893), Expect = 1.5e-92
Identity = 165/167 (98.80%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 1   MFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTY 60
           MFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTY
Sbjct: 82  MFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTY 141

Query: 61  TPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHA 120
           TPSVDMGAFVIVVNAEK+AVSGKKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHA
Sbjct: 142 TPSVDMGAFVIVVNAEKIAVSGKKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHA 201

Query: 121 VRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIRDKRINKER 168
           VRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPV+LPIRDKRINKER
Sbjct: 202 VRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIRDKRINKER 248

[Close]

BLAST of IVF0015716 vs. ExPASy TrEMBL
Match: A0A6J1IPT4 (50S ribosomal protein L13, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111477096 PE=3 SV=1)

HSP 1 Score: 347.4 bits (890), Expect = 3.2e-92
Identity = 165/167 (98.80%), Postives = 166/167 (99.40%), Query Frame = 0


Query: 1   MFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTY 60
           MFEGDELDGPDIWNKTWYPKA DHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTY
Sbjct: 82  MFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTY 141

Query: 61  TPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHA 120
           TPSVDMGAFVIVVNAEKVAVSG+KRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHA
Sbjct: 142 TPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHA 201

Query: 121 VRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIRDKRINKER 168
           VRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIRDKRINKER
Sbjct: 202 VRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIRDKRINKER 248

[Close]

BLAST of IVF0015716 vs. ExPASy TrEMBL
Match: A0A6J1F6Z3 (50S ribosomal protein L13, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111442721 PE=3 SV=1)

HSP 1 Score: 347.4 bits (890), Expect = 3.2e-92
Identity = 165/167 (98.80%), Postives = 166/167 (99.40%), Query Frame = 0


Query: 1   MFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTY 60
           MFEGDELDGPDIWNKTWYPKA DHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTY
Sbjct: 82  MFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTY 141

Query: 61  TPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHA 120
           TPSVDMGAFVIVVNAEKVAVSG+KRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHA
Sbjct: 142 TPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHA 201

Query: 121 VRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIRDKRINKER 168
           VRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIRDKRINKER
Sbjct: 202 VRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIRDKRINKER 248

[Close]

BLAST of IVF0015716 vs. ExPASy TrEMBL
Match: A0A6J1FT16 (50S ribosomal protein L13, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111446606 PE=3 SV=1)

HSP 1 Score: 347.1 bits (889), Expect = 4.2e-92
Identity = 164/167 (98.20%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 1   MFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTY 60
           MFEGDE+DGPDIWNKTWYPKAADHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTY
Sbjct: 82  MFEGDEIDGPDIWNKTWYPKAADHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTY 141

Query: 61  TPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHA 120
           TPSVDMGAFVIVVNAEKVAVSG+KRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHA
Sbjct: 142 TPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHA 201

Query: 121 VRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIRDKRINKER 168
           VRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPV+LPIRDKRINKER
Sbjct: 202 VRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIRDKRINKER 248

[Close]

BLAST of IVF0015716 vs. NCBI nr
Match: XP_008463780.1 (PREDICTED: 50S ribosomal protein L13, chloroplastic [Cucumis melo])

HSP 1 Score: 347 bits (890), Expect = 1.99e-119
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 1   MFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTY 60
           MFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTY
Sbjct: 82  MFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTY 141

Query: 61  TPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHA 120
           TPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHA
Sbjct: 142 TPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHA 201

Query: 121 VRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIRDKRINKER 167
           VRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIRDKRINKER
Sbjct: 202 VRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIRDKRINKER 248

[Close]

BLAST of IVF0015716 vs. NCBI nr
Match: XP_004146016.1 (50S ribosomal protein L13, chloroplastic [Cucumis sativus] >KGN55030.1 hypothetical protein Csa_012763 [Cucumis sativus])

HSP 1 Score: 345 bits (886), Expect = 8.10e-119
Identity = 165/167 (98.80%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 1   MFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTY 60
           MFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTY
Sbjct: 82  MFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTY 141

Query: 61  TPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHA 120
           TPSVDMGAFVIVVNAEK+AVSGKKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHA
Sbjct: 142 TPSVDMGAFVIVVNAEKIAVSGKKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHA 201

Query: 121 VRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIRDKRINKER 167
           VRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPV+LPIRDKRINKER
Sbjct: 202 VRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIRDKRINKER 248

[Close]

BLAST of IVF0015716 vs. NCBI nr
Match: XP_022935984.1 (50S ribosomal protein L13, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 344 bits (883), Expect = 2.32e-118
Identity = 165/167 (98.80%), Postives = 166/167 (99.40%), Query Frame = 0


Query: 1   MFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTY 60
           MFEGDELDGPDIWNKTWYPKA DHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTY
Sbjct: 82  MFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTY 141

Query: 61  TPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHA 120
           TPSVDMGAFVIVVNAEKVAVSG+KRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHA
Sbjct: 142 TPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHA 201

Query: 121 VRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIRDKRINKER 167
           VRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIRDKRINKER
Sbjct: 202 VRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIRDKRINKER 248

[Close]

BLAST of IVF0015716 vs. NCBI nr
Match: KAG6591772.1 (50S ribosomal protein L13, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 344 bits (883), Expect = 2.32e-118
Identity = 165/167 (98.80%), Postives = 166/167 (99.40%), Query Frame = 0


Query: 1   MFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTY 60
           MFEGDELDGPDIWNKTWYPKA DHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTY
Sbjct: 82  MFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTY 141

Query: 61  TPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHA 120
           TPSVDMGAFVIVVNAEKVAVSG+KRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHA
Sbjct: 142 TPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHA 201

Query: 121 VRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIRDKRINKER 167
           VRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIRDKRINKER
Sbjct: 202 VRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIRDKRINKER 248

[Close]

BLAST of IVF0015716 vs. NCBI nr
Match: XP_022976844.1 (50S ribosomal protein L13, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 344 bits (883), Expect = 2.32e-118
Identity = 165/167 (98.80%), Postives = 166/167 (99.40%), Query Frame = 0


Query: 1   MFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTY 60
           MFEGDELDGPDIWNKTWYPKA DHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTY
Sbjct: 82  MFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTY 141

Query: 61  TPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHA 120
           TPSVDMGAFVIVVNAEKVAVSG+KRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHA
Sbjct: 142 TPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHA 201

Query: 121 VRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIRDKRINKER 167
           VRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIRDKRINKER
Sbjct: 202 VRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIRDKRINKER 248

[Close]

BLAST of IVF0015716 vs. TAIR 10
Match: AT1G78630.1 (Ribosomal protein L13 family protein )

HSP 1 Score: 315.8 bits (808), Expect = 2.0e-86
Identity = 147/167 (88.02%), Postives = 160/167 (95.81%), Query Frame = 0


Query: 1   MFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTY 60
           MF+ +E +GPDIWN TWYPKA+DHVNT+KPW+VVDATDKILGRLASTIANHIRGK+L +Y
Sbjct: 75  MFDEEEANGPDIWNTTWYPKASDHVNTDKPWFVVDATDKILGRLASTIANHIRGKNLASY 134

Query: 61  TPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHA 120
           TPSVDMGAFVIVVNAEKVAVSGKKR QKLYRRHSGRPGGMTVETFDQLQQRIPERI+EHA
Sbjct: 135 TPSVDMGAFVIVVNAEKVAVSGKKRNQKLYRRHSGRPGGMTVETFDQLQQRIPERIVEHA 194

Query: 121 VRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIRDKRINKER 168
           VRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKP++LPIRDKRI  ++
Sbjct: 195 VRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPLDLPIRDKRIQLQK 241

[Close]

BLAST of IVF0015716 vs. TAIR 10
Match: AT3G01790.1 (Ribosomal protein L13 family protein )

HSP 1 Score: 90.1 bits (222), Expect = 1.8e-18
Identity = 47/125 (37.60%), Postives = 70/125 (56.00%), Query Frame = 0


Query: 31  WYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLY 90
           W V DA  ++LGRLAS I+  ++ KD PTY P+ D G   IV+NA+++  +G+K T K Y
Sbjct: 32  WRVFDARGQVLGRLASQISTVLQAKDKPTYCPNRDDGDICIVLNAKEIGFTGRKLTDKFY 91

Query: 91  RRHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEA 150
           R H+G  G +   +      + P  +I  AV  MLP   L       L++++G +HP   
Sbjct: 92  RWHTGYIGHLKERSLKDQMAKDPTEVIRKAVWRMLPSNNLRDDRDRKLRIFEGGEHPF-G 151

Query: 151 QKPVE 156
            KP+E
Sbjct: 152 DKPLE 155

[Close]

BLAST of IVF0015716 vs. TAIR 10
Match: AT3G01790.2 (Ribosomal protein L13 family protein )

HSP 1 Score: 90.1 bits (222), Expect = 1.8e-18
Identity = 47/125 (37.60%), Postives = 70/125 (56.00%), Query Frame = 0


Query: 31  WYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLY 90
           W V DA  ++LGRLAS I+  ++ KD PTY P+ D G   IV+NA+++  +G+K T K Y
Sbjct: 32  WRVFDARGQVLGRLASQISTVLQAKDKPTYCPNRDDGDICIVLNAKEIGFTGRKLTDKFY 91

Query: 91  RRHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEA 150
           R H+G  G +   +      + P  +I  AV  MLP   L       L++++G +HP   
Sbjct: 92  RWHTGYIGHLKERSLKDQMAKDPTEVIRKAVWRMLPSNNLRDDRDRKLRIFEGGEHPF-G 151

Query: 151 QKPVE 156
            KP+E
Sbjct: 152 DKPLE 155

The following BLAST results are available for this feature:

BLAST of IVF0015716 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SYL9	2.8e-85	88.02	50S ribosomal protein L13, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL1...	[more]
P12629	1.4e-76	80.84	50S ribosomal protein L13, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL13 P...	[more]
B8HMT1	1.0e-50	67.81	50S ribosomal protein L13 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) OX=39...	[more]
Q3MF94	2.3e-50	68.97	50S ribosomal protein L13 OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937...	[more]
Q8YPK6	6.6e-50	68.28	50S ribosomal protein L13 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576...	[more]

BLAST of IVF0015716 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CK07	5.0e-93	100.00	50S ribosomal protein L13, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501842...	[more]
A0A0A0KZG1	1.5e-92	98.80	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G623380 PE=3 SV=1	[more]
A0A6J1IPT4	3.2e-92	98.80	50S ribosomal protein L13, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1F6Z3	3.2e-92	98.80	50S ribosomal protein L13, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1FT16	4.2e-92	98.20	50S ribosomal protein L13, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L...	[more]

BLAST of IVF0015716 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008463780.1	1.99e-119	100.00	PREDICTED: 50S ribosomal protein L13, chloroplastic [Cucumis melo]	[more]
XP_004146016.1	8.10e-119	98.80	50S ribosomal protein L13, chloroplastic [Cucumis sativus] >KGN55030.1 hypotheti...	[more]
XP_022935984.1	2.32e-118	98.80	50S ribosomal protein L13, chloroplastic-like [Cucurbita moschata]	[more]
KAG6591772.1	2.32e-118	98.80	50S ribosomal protein L13, chloroplastic, partial [Cucurbita argyrosperma subsp....	[more]
XP_022976844.1	2.32e-118	98.80	50S ribosomal protein L13, chloroplastic-like [Cucurbita maxima]	[more]

BLAST of IVF0015716 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G78630.1	2.0e-86	88.02	Ribosomal protein L13 family protein	[more]
AT3G01790.1	1.8e-18	37.60	Ribosomal protein L13 family protein	[more]
AT3G01790.2	1.8e-18	37.60	Ribosomal protein L13 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005822	Ribosomal protein L13	PFAM	PF00572	Ribosomal_L13	coord: 30..147 e-value: 5.5E-45 score: 152.3
IPR005822	Ribosomal protein L13	PANTHER	PTHR11545	RIBOSOMAL PROTEIN L13	coord: 7..164
IPR005822	Ribosomal protein L13	HAMAP	MF_01366	Ribosomal_L13	coord: 31..157 score: 27.385317
IPR005822	Ribosomal protein L13	CDD	cd00392	Ribosomal_L13	coord: 31..144 e-value: 1.41553E-62 score: 186.556
IPR005823	Ribosomal protein L13, bacterial-type	TIGRFAM	TIGR01066	TIGR01066	coord: 25..156 e-value: 4.5E-57 score: 189.8
IPR036899	Ribosomal protein L13 superfamily	GENE3D	3.90.1180.10	Ribosomal protein L13	coord: 20..163 e-value: 1.2E-61 score: 208.6
IPR036899	Ribosomal protein L13 superfamily	SUPERFAMILY	52161	Ribosomal protein L13	coord: 25..159
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 143..167
None	No IPR available	PANTHER	PTHR11545:SF27	BNAA02G18970D PROTEIN	coord: 7..164
IPR023563	Ribosomal protein L13, conserved site	PROSITE	PS00783	RIBOSOMAL_L13	coord: 121..143

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0015716.2	IVF0015716.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0017148	negative regulation of translation
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome