IVF0015702 (gene) Melon (IVF77) v1

Overview


Name	IVF0015702
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Gag/pol protein
Location	chr07: 5004997 .. 5005317 (-)
RNA-Seq Expression	IVF0015702
Synteny	IVF0015702

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGAGAGAGAATGCCCCGCACTCAGTTTTCTCGTCCTGGGGTAAAAAGTGGTCCCCCAACGGTTTCTTCCCTTTGGTTCGTATTGGTCATAAATATTTCGATCTTCGTGGCTCGTGCTTTGAGGACTTCAATCCACACTTCTGGCATGCTCCGTGACACATTTTCCCAAGGTATTGGTCCGGAACCGAGCTCGGTGGAGGGAGAACTAAGATGCGATCCAAAATTGTCCAAAAGATGGCCAATGCTTCAACGAGTGGCGAATCCTCGTATGGTGTCAGAAACAACTGGAAATGCATCTGCCTTGAAAAAAATGGGCTGA

mRNA sequence

ATGCGAGAGAGAATGCCCCGCACTCAGTTTTCTCGTCCTGGGGTAAAAAGTGGTCCCCCAACGGTTTCTTCCCTTTGGTTCGTATTGGTCATAAATATTTCGATCTTCGTGGCTCGTGCTTTGAGGACTTCAATCCACACTTCTGGCATGCTCCGTGACACATTTTCCCAAGGTATTGGTCCGGAACCGAGCTCGGTGGAGGGAGAACTAAGATGCGATCCAAAATTGTCCAAAAGATGGCCAATGCTTCAACGAGTGGCGAATCCTCGTATGGTGTCAGAAACAACTGGAAATGCATCTGCCTTGAAAAAAATGGGCTGA

Coding sequence (CDS)

ATGCGAGAGAGAATGCCCCGCACTCAGTTTTCTCGTCCTGGGGTAAAAAGTGGTCCCCCAACGGTTTCTTCCCTTTGGTTCGTATTGGTCATAAATATTTCGATCTTCGTGGCTCGTGCTTTGAGGACTTCAATCCACACTTCTGGCATGCTCCGTGACACATTTTCCCAAGGTATTGGTCCGGAACCGAGCTCGGTGGAGGGAGAACTAAGATGCGATCCAAAATTGTCCAAAAGATGGCCAATGCTTCAACGAGTGGCGAATCCTCGTATGGTGTCAGAAACAACTGGAAATGCATCTGCCTTGAAAAAAATGGGCTGA

Protein sequence

MRERMPRTQFSRPGVKSGPPTVSSLWFVLVINISIFVARALRTSIHTSGMLRDTFSQGIGPEPSSVEGELRCDPKLSKRWPMLQRVANPRMVSETTGNASALKKMG

Homology

[Close]

BLAST of IVF0015702 vs. ExPASy TrEMBL
Match: A0A5A7V5J2 (Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00210 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 5.9e-23
Identity = 64/102 (62.75%), Postives = 73/102 (71.57%), Query Frame = 0


Query: 2    RERMPRTQFSRPGVKSGPPTVSSLWFVLVINISIFVARALRTSIHTSGMLRDTFSQGIGP 61
            R RMPR+QFSR G KS  PTVSSL FVLVIN+SIF AR  RTS HT+GML D FS+GIG 
Sbjct: 1535 RARMPRSQFSRSGAKSDTPTVSSLCFVLVINLSIFEARTPRTSTHTTGMLPDMFSRGIGQ 1594

Query: 62   EPSSVEGELRCDPKLSKRWPMLQRVANPRMVSETTGNASALK 104
            E SS+EGEL C+PK SKRW ML     P  V  ++G  + LK
Sbjct: 1595 EASSLEGELWCNPKRSKRWTML-----PTSVERSSGIRNHLK 1631

[Close]

BLAST of IVF0015702 vs. ExPASy TrEMBL
Match: A0A5A7V129 (Ribosomal protein L5 (Mitochondrion) OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold242G002350 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 2.9e-22
Identity = 62/92 (67.39%), Postives = 68/92 (73.91%), Query Frame = 0


Query: 5  MPRTQFSRPGVKSGPPTVSSLWFVLVINISIFVARALRTSIHTSGMLRDTFSQGIGPEPS 64
          MPRTQFS P VKSG PTVSSL  V VI++SIF ARA  TS+HT GML  TFSQGIG E S
Sbjct: 1  MPRTQFSHPRVKSGSPTVSSLCSVFVISLSIFGARASSTSVHTPGMLLHTFSQGIGREES 60

Query: 65 SVEGELRCDPKLSKRWPMLQRVANPRMVSETT 97
          S+EG+L C+PK SKRWPML   A P   S TT
Sbjct: 61 SLEGQLWCNPKGSKRWPMLP-TAQPNDASNTT 91

[Close]

BLAST of IVF0015702 vs. ExPASy TrEMBL
Match: A0A5D3CUK8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00690 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.8e-16
Identity = 54/97 (55.67%), Postives = 62/97 (63.92%), Query Frame = 0


Query: 1   MRERMPRTQFSRPGVKSGPPTVSSLWFVLVINISIFVARALRTSIHTSGMLRDTFSQGIG 60
           MR RMP TQF   GVK+ P TVS    VLVI  S F     RTS++  G++   F Q I 
Sbjct: 239 MRARMPWTQFFHRGVKNSPTTVSLFCVVLVIGASNFGTHTPRTSVYILGIVPHLFFQSIC 298

Query: 61  PEPSSVEGELRCDPKLSKRWPML-QRVANPRMVSETT 97
            + SS+EGELRC PK SKRWPML QRV N  +VSETT
Sbjct: 299 RDASSLEGELRCHPKRSKRWPMLFQRVTNAHLVSETT 335

[Close]

BLAST of IVF0015702 vs. ExPASy TrEMBL
Match: A0A5A7VEB1 (Retrotransposon protein, putative, Ty3-gypsy subclass, expressed OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold638G00210 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 4.1e-16
Identity = 53/94 (56.38%), Postives = 64/94 (68.09%), Query Frame = 0


Query: 1    MRERMPRTQFSRPGVKSGPPTVSSLWFVLVINISIFVARALRTSIHTSGMLRDTFSQGIG 60
            +R RMP TQF   GVK+GP  VS    VLVI+ S F    LRTS++  G++R +FSQ IG
Sbjct: 1141 VRTRMPWTQFFYLGVKNGPTMVSWFCVVLVISASSFRTHTLRTSVYIPGIVRHSFSQSIG 1200

Query: 61   PEPSSVEGELRCDPKLSKRWPML-QRVANPRMVS 94
             E SS +GE RC+PK SK WP+L QRVAN R VS
Sbjct: 1201 REASSFKGEQRCNPKRSKIWPILFQRVANARPVS 1234

[Close]

BLAST of IVF0015702 vs. ExPASy TrEMBL
Match: A0A5A7V368 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1799G00060 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 2.0e-15
Identity = 50/79 (63.29%), Postives = 54/79 (68.35%), Query Frame = 0


Query: 5  MPRTQFSRPGVKSGPPTVSSLWFVLVINISIFVARALRTSIHTSGMLRDTFSQGIGPEPS 64
          MPRTQFSR   K  P        VLVI++SIF AR LRTS HTSGML   F+QGIG E S
Sbjct: 1  MPRTQFSRRRAKMVPQRFLPFGTVLVISLSIFEARTLRTSTHTSGMLPHMFTQGIGREAS 60

Query: 65 SVEGELRCDPKLSKRWPML 84
          S+EGEL  DPK  KRWPML
Sbjct: 61 SLEGELWFDPKRFKRWPML 79

[Close]

BLAST of IVF0015702 vs. NCBI nr
Match: KAA0059489.1 (ribosomal protein L5 [Cucumis melo var. makuwa])

HSP 1 Score: 114 bits (286), Expect = 1.58e-29
Identity = 62/92 (67.39%), Postives = 68/92 (73.91%), Query Frame = 0


Query: 5  MPRTQFSRPGVKSGPPTVSSLWFVLVINISIFVARALRTSIHTSGMLRDTFSQGIGPEPS 64
          MPRTQFS P VKSG PTVSSL  V VI++SIF ARA  TS+HT GML  TFSQGIG E S
Sbjct: 1  MPRTQFSHPRVKSGSPTVSSLCSVFVISLSIFGARASSTSVHTPGMLLHTFSQGIGREES 60

Query: 65 SVEGELRCDPKLSKRWPMLQRVANPRMVSETT 96
          S+EG+L C+PK SKRWPML   A P   S TT
Sbjct: 61 SLEGQLWCNPKGSKRWPMLP-TAQPNDASNTT 91

[Close]

BLAST of IVF0015702 vs. NCBI nr
Match: KAA0062888.1 (non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa] >TYK22520.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 117 bits (292), Expect = 8.94e-28
Identity = 64/102 (62.75%), Postives = 73/102 (71.57%), Query Frame = 0


Query: 2    RERMPRTQFSRPGVKSGPPTVSSLWFVLVINISIFVARALRTSIHTSGMLRDTFSQGIGP 61
            R RMPR+QFSR G KS  PTVSSL FVLVIN+SIF AR  RTS HT+GML D FS+GIG 
Sbjct: 1535 RARMPRSQFSRSGAKSDTPTVSSLCFVLVINLSIFEARTPRTSTHTTGMLPDMFSRGIGQ 1594

Query: 62   EPSSVEGELRCDPKLSKRWPMLQRVANPRMVSETTGNASALK 103
            E SS+EGEL C+PK SKRW ML     P  V  ++G  + LK
Sbjct: 1595 EASSLEGELWCNPKRSKRWTML-----PTSVERSSGIRNHLK 1631

[Close]

BLAST of IVF0015702 vs. NCBI nr
Match: KAA0061317.1 (hypothetical protein E6C27_scaffold6213G00130 [Cucumis melo var. makuwa] >TYK14265.1 hypothetical protein E5676_scaffold1799G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 92.0 bits (227), Expect = 3.86e-20
Identity = 50/79 (63.29%), Postives = 54/79 (68.35%), Query Frame = 0


Query: 5  MPRTQFSRPGVKSGPPTVSSLWFVLVINISIFVARALRTSIHTSGMLRDTFSQGIGPEPS 64
          MPRTQFSR   K  P        VLVI++SIF AR LRTS HTSGML   F+QGIG E S
Sbjct: 1  MPRTQFSRRRAKMVPQRFLPFGTVLVISLSIFEARTLRTSTHTSGMLPHMFTQGIGREAS 60

Query: 65 SVEGELRCDPKLSKRWPML 83
          S+EGEL  DPK  KRWPML
Sbjct: 61 SLEGELWFDPKRFKRWPML 79

[Close]

BLAST of IVF0015702 vs. NCBI nr
Match: KAA0047411.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK14086.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 95.1 bits (235), Expect = 4.15e-20
Identity = 54/97 (55.67%), Postives = 62/97 (63.92%), Query Frame = 0


Query: 1   MRERMPRTQFSRPGVKSGPPTVSSLWFVLVINISIFVARALRTSIHTSGMLRDTFSQGIG 60
           MR RMP TQF   GVK+ P TVS    VLVI  S F     RTS++  G++   F Q I 
Sbjct: 239 MRARMPWTQFFHRGVKNSPTTVSLFCVVLVIGASNFGTHTPRTSVYILGIVPHLFFQSIC 298

Query: 61  PEPSSVEGELRCDPKLSKRWPML-QRVANPRMVSETT 96
            + SS+EGELRC PK SKRWPML QRV N  +VSETT
Sbjct: 299 RDASSLEGELRCHPKRSKRWPMLFQRVTNAHLVSETT 335

[Close]

BLAST of IVF0015702 vs. NCBI nr
Match: TYK15439.1 (uncharacterized protein E5676_scaffold477G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 90.9 bits (224), Expect = 5.33e-20
Identity = 47/69 (68.12%), Postives = 51/69 (73.91%), Query Frame = 0


Query: 15  VKSGPPTVSSLWFVLVINISIFVARALRTSIHTSGMLRDTFSQGIGPEPSSVEGELRCDP 74
           VKSGPPTVSS+  VLVI +SIF A   RTS HT GML D FS GI  E  S+EGEL CDP
Sbjct: 129 VKSGPPTVSSICSVLVIGLSIFGASVPRTSTHTPGMLPDMFSGGIDREARSLEGELWCDP 188

Query: 75  KLSKRWPML 83
           K S+RWPML
Sbjct: 189 KRSERWPML 197

The following BLAST results are available for this feature:

BLAST of IVF0015702 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0015702 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V5J2	5.9e-23	62.75	Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. mak...	[more]
A0A5A7V129	2.9e-22	67.39	Ribosomal protein L5 (Mitochondrion) OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5D3CUK8	1.8e-16	55.67	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G0069...	[more]
A0A5A7VEB1	4.1e-16	56.38	Retrotransposon protein, putative, Ty3-gypsy subclass, expressed OS=Cucumis melo...	[more]
A0A5A7V368	2.0e-15	63.29	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of IVF0015702 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0059489.1	1.58e-29	67.39	ribosomal protein L5 [Cucumis melo var. makuwa]	[more]
KAA0062888.1	8.94e-28	62.75	non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuw...	[more]
KAA0061317.1	3.86e-20	63.29	hypothetical protein E6C27_scaffold6213G00130 [Cucumis melo var. makuwa] >TYK142...	[more]
KAA0047411.1	4.15e-20	55.67	gag/pol protein [Cucumis melo var. makuwa] >TYK14086.1 gag/pol protein [Cucumis ...	[more]
TYK15439.1	5.33e-20	68.12	uncharacterized protein E5676_scaffold477G00010 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0015702 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0015702.1	IVF0015702.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process
cellular_component	GO:0110165	cellular anatomical entity
molecular_function	GO:0140640	catalytic activity, acting on a nucleic acid
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0046872	metal ion binding