IVF0015677 (gene) Melon (IVF77) v1

Overview


Name	IVF0015677
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	DNA/RNA polymerases superfamily protein
Location	chr11: 12391356 .. 12391544 (+)
RNA-Seq Expression	IVF0015677
Synteny	IVF0015677

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGTGTAGCAACTGGCTTGGTCGAGTAGCACATACGGAAGGAGAGGCGACGCCTTCAGGAGGCAGCGACGAGCGGCTGAACCGCAAGGGGAGTCCTTCTGTCGCGGTGGTGTGGACGAAAACAACGGGCGACAGCTTCGGAAGGAGGAGATCGGGAACGGAAAGGGCGACGTTGGTCGGAGCTTAG

mRNA sequence

ATGTGGTGTAGCAACTGGCTTGGTCGAGTAGCACATACGGAAGGAGAGGCGACGCCTTCAGGAGGCAGCGACGAGCGGCTGAACCGCAAGGGGAGTCCTTCTGTCGCGGTGGTGTGGACGAAAACAACGGGCGACAGCTTCGGAAGGAGGAGATCGGGAACGGAAAGGGCGACGTTGGTCGGAGCTTAG

Coding sequence (CDS)

ATGTGGTGTAGCAACTGGCTTGGTCGAGTAGCACATACGGAAGGAGAGGCGACGCCTTCAGGAGGCAGCGACGAGCGGCTGAACCGCAAGGGGAGTCCTTCTGTCGCGGTGGTGTGGACGAAAACAACGGGCGACAGCTTCGGAAGGAGGAGATCGGGAACGGAAAGGGCGACGTTGGTCGGAGCTTAG

Protein sequence

MWCSNWLGRVAHTEGEATPSGGSDERLNRKGSPSVAVVWTKTTGDSFGRRRSGTERATLVGA

Homology

[Close]

BLAST of IVF0015677 vs. ExPASy TrEMBL
Match: A0A5A7TSJ4 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G005930 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.2e-23
Identity = 56/62 (90.32%), Postives = 58/62 (93.55%), Query Frame = 0


Query: 1   MWCSNWLGRVAHTEGEATPSGGSDERLNRKGSPSVAVVWTKTTGDSFGRRRSGTERATLV 60
           MWCS+WLGRVAHTEGEAT SGGSDERLNRK SPS+AVVWTKTTGDSF RRR GTERATLV
Sbjct: 352 MWCSSWLGRVAHTEGEATASGGSDERLNRKRSPSIAVVWTKTTGDSFERRRLGTERATLV 411

Query: 61  GA 63
           GA
Sbjct: 412 GA 413

[Close]

BLAST of IVF0015677 vs. ExPASy TrEMBL
Match: A0A5D3DXY0 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1467G00030 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.3e-22
Identity = 55/62 (88.71%), Postives = 58/62 (93.55%), Query Frame = 0


Query: 1  MWCSNWLGRVAHTEGEATPSGGSDERLNRKGSPSVAVVWTKTTGDSFGRRRSGTERATLV 60
          MWCS+WLGRVAHTEGEAT SGGSDERLN KGS SVAVVWT+TTGDSFGR RSGT+RATLV
Sbjct: 1  MWCSSWLGRVAHTEGEATTSGGSDERLNCKGSRSVAVVWTETTGDSFGRGRSGTKRATLV 60

Query: 61 GA 63
          GA
Sbjct: 61 GA 62

[Close]

BLAST of IVF0015677 vs. ExPASy TrEMBL
Match: A0A5A7V8U7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold828G00560 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.6e-07
Identity = 34/56 (60.71%), Postives = 36/56 (64.29%), Query Frame = 0


Query: 1  MWCSNWLGRVAHTEGEATPSGGSDERLNRKGSPSVAVVWTK---TTGDSFGRRRSG 54
          MWCS WLG VAHTEGEAT SG SDERLNRKGS S      K   T  +   R+R G
Sbjct: 1  MWCSRWLGPVAHTEGEATTSGDSDERLNRKGSRSARWCGRKQRATASEEGDRKRKG 56

[Close]

BLAST of IVF0015677 vs. NCBI nr
Match: TYK28100.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 115 bits (287), Expect = 2.70e-30
Identity = 55/62 (88.71%), Postives = 58/62 (93.55%), Query Frame = 0


Query: 1  MWCSNWLGRVAHTEGEATPSGGSDERLNRKGSPSVAVVWTKTTGDSFGRRRSGTERATLV 60
          MWCS+WLGRVAHTEGEAT SGGSDERLN KGS SVAVVWT+TTGDSFGR RSGT+RATLV
Sbjct: 1  MWCSSWLGRVAHTEGEATTSGGSDERLNCKGSRSVAVVWTETTGDSFGRGRSGTKRATLV 60

Query: 61 GA 62
          GA
Sbjct: 61 GA 62

[Close]

BLAST of IVF0015677 vs. NCBI nr
Match: KAA0046024.1 (gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 118 bits (296), Expect = 7.41e-30
Identity = 56/62 (90.32%), Postives = 58/62 (93.55%), Query Frame = 0


Query: 1   MWCSNWLGRVAHTEGEATPSGGSDERLNRKGSPSVAVVWTKTTGDSFGRRRSGTERATLV 60
           MWCS+WLGRVAHTEGEAT SGGSDERLNRK SPS+AVVWTKTTGDSF RRR GTERATLV
Sbjct: 352 MWCSSWLGRVAHTEGEATASGGSDERLNRKRSPSIAVVWTKTTGDSFERRRLGTERATLV 411

Query: 61  GA 62
           GA
Sbjct: 412 GA 413

[Close]

BLAST of IVF0015677 vs. NCBI nr
Match: KAA0063417.1 (hypothetical protein E6C27_scaffold508G00570 [Cucumis melo var. makuwa] >TYK11679.1 hypothetical protein E5676_scaffold828G00560 [Cucumis melo var. makuwa])

HSP 1 Score: 65.5 bits (158), Expect = 1.19e-11
Identity = 34/56 (60.71%), Postives = 36/56 (64.29%), Query Frame = 0


Query: 1  MWCSNWLGRVAHTEGEATPSGGSDERLNRKGSPSVAVVWTK---TTGDSFGRRRSG 53
          MWCS WLG VAHTEGEAT SG SDERLNRKGS S      K   T  +   R+R G
Sbjct: 1  MWCSRWLGPVAHTEGEATTSGDSDERLNRKGSRSARWCGRKQRATASEEGDRKRKG 56

The following BLAST results are available for this feature:

BLAST of IVF0015677 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0015677 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TSJ4	1.2e-23	90.32	Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A5D3DXY0	1.3e-22	88.71	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7V8U7	1.6e-07	60.71	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of IVF0015677 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK28100.1	2.70e-30	88.71	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0046024.1	7.41e-30	90.32	gag protease polyprotein [Cucumis melo var. makuwa]	[more]
KAA0063417.1	1.19e-11	60.71	hypothetical protein E6C27_scaffold508G00570 [Cucumis melo var. makuwa] >TYK1167...	[more]

BLAST of IVF0015677 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..33

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0015677.1	IVF0015677.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008233	peptidase activity