IVF0015665 (gene) Melon (IVF77) v1

Overview


Name	IVF0015665
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Transposon Tf2-9 polyprotein
Location	tig00001378: 325363 .. 325677 (-)
RNA-Seq Expression	IVF0015665
Synteny	IVF0015665

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGTGGTTTTGGTTGTACAGCGCTGGCGTCCTTATCTATTGGAAACAAGATTTATTGTTAAAACAGACCAGAAGTCACTTAAGTTTTTATTGGAACAACGGGTAGTCCAATTGCAATATCAGAAATGGGTAGCCAAATTACTTGGATATTCATTTGAAGTGGTTTATAAACCAGGCCTTGAAAGCAAAGCAGCTGATGCTTTGTCTAGAAAACCGTTGGATGTACAGTTTTGTGGAATCTCTGCACTAGTTTTAATTGATTTAAAAATTATCAAGGAAGGGTGGAGGAGGATGAGAAACTTCAGAAAGTAG

mRNA sequence

ATGGCTGTGGTTTTGGTTGTACAGCGCTGGCGTCCTTATCTATTGGAAACAAGATTTATTGTTAAAACAGACCAGAAGTCACTTAAGTTTTTATTGGAACAACGGGTAGTCCAATTGCAATATCAGAAATGGGTAGCCAAATTACTTGGATATTCATTTGAAGTGGTTTATAAACCAGGCCTTGAAAGCAAAGCAGCTGATGCTTTGTCTAGAAAACCGTTGGATGTACAGTTTTGTGGAATCTCTGCACTAGTTTTAATTGATTTAAAAATTATCAAGGAAGGGTGGAGGAGGATGAGAAACTTCAGAAAGTAG

Coding sequence (CDS)

ATGGCTGTGGTTTTGGTTGTACAGCGCTGGCGTCCTTATCTATTGGAAACAAGATTTATTGTTAAAACAGACCAGAAGTCACTTAAGTTTTTATTGGAACAACGGGTAGTCCAATTGCAATATCAGAAATGGGTAGCCAAATTACTTGGATATTCATTTGAAGTGGTTTATAAACCAGGCCTTGAAAGCAAAGCAGCTGATGCTTTGTCTAGAAAACCGTTGGATGTACAGTTTTGTGGAATCTCTGCACTAGTTTTAATTGATTTAAAAATTATCAAGGAAGGGTGGAGGAGGATGAGAAACTTCAGAAAGTAG

Protein sequence

MAVVLVVQRWRPYLLETRFIVKTDQKSLKFLLEQRVVQLQYQKWVAKLLGYSFEVVYKPGLESKAADALSRKPLDVQFCGISALVLIDLKIIKEGWRRMRNFRK

Homology

[Close]

BLAST of IVF0015665 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 5.8e-04
Identity = 23/71 (32.39%), Postives = 42/71 (59.15%), Query Frame = 0


Query: 1   MAVVLVVQRWRPYLLETRFIVKTDQKSLKFLLEQRVVQLQYQKWVAKLLGYSFEVVYKPG 60
           +A+V   + +R YLL  +F++ +D + L++L   +    + ++W  +L  Y F++ Y  G
Sbjct: 552 LAIVWATKTFRHYLLGRQFLIASDHQPLRWLHNLKEPGAKLERWRVRLSEYQFKIDYIKG 611

Query: 61  LESKAADALSR 72
            E+  ADALSR
Sbjct: 612 KENSVADALSR 622

[Close]

BLAST of IVF0015665 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 5.8e-04
Identity = 27/74 (36.49%), Postives = 41/74 (55.41%), Query Frame = 0


Query: 1   MAVVLVVQRWRPYLLETRFI-VKTDQKSLKFLLEQRVVQLQYQKWVAKLLGYSFEVVYKP 60
           +A++  +   R YL     I V TD + L F L  R    + ++W A++  Y+ E++YKP
Sbjct: 483 LAIIWSLDNLRAYLYGAGTIKVYTDHQPLTFALGNRNFNAKLKRWKARIEEYNCELIYKP 542

Query: 61  GLESKAADALSRKP 74
           G  +  ADALSR P
Sbjct: 543 GKSNVVADALSRIP 556

[Close]

BLAST of IVF0015665 vs. ExPASy TrEMBL
Match: A0A5D3E461 (RNA-directed DNA polymerase (Reverse transcriptase) OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold343G00090 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 1.2e-36
Identity = 82/94 (87.23%), Postives = 88/94 (93.62%), Query Frame = 0


Query: 1   MAVVLVVQRWRPYLLETRFIVKTDQKSLKFLLEQRVVQLQYQKWVAKLLGYSFEVVYKPG 60
           MAVVL VQ WRPYLL TRFIVKTDQKSLKFLLEQRVVQ QYQKWVAKLLGYSFEVVYKPG
Sbjct: 216 MAVVLAVQHWRPYLLGTRFIVKTDQKSLKFLLEQRVVQPQYQKWVAKLLGYSFEVVYKPG 275

Query: 61  LESKAADALSRKPLDVQFCGISALVLIDLKIIKE 95
           L++KAADALSRKP D+QFCGI+A VL+DLKII+E
Sbjct: 276 LKNKAADALSRKPPDIQFCGITAPVLVDLKIIRE 309

[Close]

BLAST of IVF0015665 vs. ExPASy TrEMBL
Match: A0A5D3E0L0 (Transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G001680 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 6.2e-33
Identity = 76/104 (73.08%), Postives = 87/104 (83.65%), Query Frame = 0


Query: 1   MAVVLVVQRWRPYLLETRFIVKTDQKSLKFLLEQRVVQLQYQKWVAKLLGYSFEVVYKPG 60
           +AVVL VQRWRPYLLE +FIVKTDQKSLKFLLEQRV+Q QYQKWV+KLLGYSFEVVYKPG
Sbjct: 60  IAVVLSVQRWRPYLLEAKFIVKTDQKSLKFLLEQRVIQPQYQKWVSKLLGYSFEVVYKPG 119

Query: 61  LESKAADALSRKPLDVQFCGISALVLIDLKIIKEGWRRMRNFRK 105
           LE+KA DALSRKP D+Q   ISA  L+DL++IKE   +    +K
Sbjct: 120 LENKATDALSRKPRDIQLNAISAPYLVDLQVIKEEVEKDEKLKK 163

[Close]

BLAST of IVF0015665 vs. ExPASy TrEMBL
Match: A0A5D3CTT4 (Transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold461G00330 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 8.1e-33
Identity = 76/104 (73.08%), Postives = 88/104 (84.62%), Query Frame = 0


Query: 1   MAVVLVVQRWRPYLLETRFIVKTDQKSLKFLLEQRVVQLQYQKWVAKLLGYSFEVVYKPG 60
           MAV+L VQRWRPYLL  +FIVKTDQKSLKFLLEQRV+Q QYQKWV+KLLGYSFEVVYKPG
Sbjct: 14  MAVLLSVQRWRPYLLGAKFIVKTDQKSLKFLLEQRVIQPQYQKWVSKLLGYSFEVVYKPG 73

Query: 61  LESKAADALSRKPLDVQFCGISALVLIDLKIIKEGWRRMRNFRK 105
           LE+KAADALSRKP D+Q   ISA  L+DL++IKE  ++    +K
Sbjct: 74  LENKAADALSRKPPDIQLNAISAPYLVDLQVIKEEVKKDEKLKK 117

[Close]

BLAST of IVF0015665 vs. ExPASy TrEMBL
Match: A0A5A7UGG9 (Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G00540 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.4e-32
Identity = 73/94 (77.66%), Postives = 82/94 (87.23%), Query Frame = 0


Query: 1   MAVVLVVQRWRPYLLETRFIVKTDQKSLKFLLEQRVVQLQYQKWVAKLLGYSFEVVYKPG 60
           MAVVL VQRWRPYLL  RF+VKTDQKS KFLLEQR +Q QYQKWVAKLLGYSFEV+YKPG
Sbjct: 178 MAVVLAVQRWRPYLLGARFVVKTDQKSPKFLLEQRAIQPQYQKWVAKLLGYSFEVIYKPG 237

Query: 61  LESKAADALSRKPLDVQFCGISALVLIDLKIIKE 95
           LE+KAADALSRKP+++  CG+SA  L+DL  IKE
Sbjct: 238 LENKAADALSRKPMEIMNCGMSAPTLVDLTTIKE 271

[Close]

BLAST of IVF0015665 vs. ExPASy TrEMBL
Match: A0A5A7TVZ8 (Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold908G001510 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.8e-32
Identity = 78/104 (75.00%), Postives = 86/104 (82.69%), Query Frame = 0


Query: 1   MAVVLVVQRWRPYLLETRFIVKTDQKSLKFLLEQRVVQLQYQKWVAKLLGYSFEVVYKPG 60
           M VVL VQRWRPYLL T+F+VKT+QKS KFLLEQRVVQ QYQKWV+KLLGYSFEVVYKPG
Sbjct: 324 MVVVLSVQRWRPYLLGTKFVVKTNQKSFKFLLEQRVVQPQYQKWVSKLLGYSFEVVYKPG 383

Query: 61  LESKAADALSRKPLDVQFCGISALVLIDLKIIKEGWRRMRNFRK 105
           LE+KAADALSRKP D+Q   ISA  L+DLKIIKE   R    +K
Sbjct: 384 LENKAADALSRKPPDIQLSVISAPYLVDLKIIKEEVGRDEKLQK 427

[Close]

BLAST of IVF0015665 vs. NCBI nr
Match: TYK30692.1 (RNA-directed DNA polymerase (Reverse transcriptase) [Cucumis melo var. makuwa])

HSP 1 Score: 163 bits (412), Expect = 1.33e-44
Identity = 82/94 (87.23%), Postives = 88/94 (93.62%), Query Frame = 0


Query: 1   MAVVLVVQRWRPYLLETRFIVKTDQKSLKFLLEQRVVQLQYQKWVAKLLGYSFEVVYKPG 60
           MAVVL VQ WRPYLL TRFIVKTDQKSLKFLLEQRVVQ QYQKWVAKLLGYSFEVVYKPG
Sbjct: 216 MAVVLAVQHWRPYLLGTRFIVKTDQKSLKFLLEQRVVQPQYQKWVAKLLGYSFEVVYKPG 275

Query: 61  LESKAADALSRKPLDVQFCGISALVLIDLKIIKE 94
           L++KAADALSRKP D+QFCGI+A VL+DLKII+E
Sbjct: 276 LKNKAADALSRKPPDIQFCGITAPVLVDLKIIRE 309

[Close]

BLAST of IVF0015665 vs. NCBI nr
Match: KAA0054138.1 (Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 149 bits (377), Expect = 5.88e-42
Identity = 73/94 (77.66%), Postives = 82/94 (87.23%), Query Frame = 0


Query: 1   MAVVLVVQRWRPYLLETRFIVKTDQKSLKFLLEQRVVQLQYQKWVAKLLGYSFEVVYKPG 60
           MAVVL VQRWRPYLL  RF+VKTDQKS KFLLEQR +Q QYQKWVAKLLGYSFEV+YKPG
Sbjct: 178 MAVVLAVQRWRPYLLGARFVVKTDQKSPKFLLEQRAIQPQYQKWVAKLLGYSFEVIYKPG 237

Query: 61  LESKAADALSRKPLDVQFCGISALVLIDLKIIKE 94
           LE+KAADALSRKP+++  CG+SA  L+DL  IKE
Sbjct: 238 LENKAADALSRKPMEIMNCGMSAPTLVDLTTIKE 271

[Close]

BLAST of IVF0015665 vs. NCBI nr
Match: KAA0067391.1 (transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa] >TYK26532.1 transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 146 bits (369), Expect = 7.85e-41
Identity = 77/95 (81.05%), Postives = 82/95 (86.32%), Query Frame = 0


Query: 1   MAVVLVVQRWRPYLLETRFIVKTDQKSLKFLLEQRVVQLQYQKWVAKLLGYSFEVVYKPG 60
           MAVVL VQ W PYLL T FIVKTD+KSLK LLEQRV+Q QYQKWVAKLL YSFEVVYKPG
Sbjct: 197 MAVVLAVQHWHPYLLGTSFIVKTDKKSLKLLLEQRVIQPQYQKWVAKLLEYSFEVVYKPG 256

Query: 61  LESKAADALSRKPLDVQFCG-ISALVLIDLKIIKE 94
           LE+KAADALSRKPLDVQ CG +SA +LI LK IKE
Sbjct: 257 LENKAADALSRKPLDVQLCGRVSAPILIGLKTIKE 291

[Close]

BLAST of IVF0015665 vs. NCBI nr
Match: KAA0042009.1 (Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa] >TYK17945.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 147 bits (371), Expect = 1.56e-40
Identity = 75/92 (81.52%), Postives = 81/92 (88.04%), Query Frame = 0


Query: 3   VVLVVQRWRPYLLETRFIVKTDQKSLKFLLEQRVVQLQYQKWVAKLLGYSFEVVYKPGLE 62
           VVL VQ WRPYLL TRFIVKTDQKSLKFLLEQR +Q QYQKWVAKLL YSF+VVYKPGLE
Sbjct: 241 VVLAVQHWRPYLLGTRFIVKTDQKSLKFLLEQRAIQPQYQKWVAKLLEYSFKVVYKPGLE 300

Query: 63  SKAADALSRKPLDVQFCGISALVLIDLKIIKE 94
           ++AADALSRKP +V  CGISA +LIDLK IKE
Sbjct: 301 NRAADALSRKPSEVLNCGISAPILIDLKTIKE 332

[Close]

BLAST of IVF0015665 vs. NCBI nr
Match: TYK14862.1 (transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 150 bits (380), Expect = 1.81e-40
Identity = 76/104 (73.08%), Postives = 88/104 (84.62%), Query Frame = 0


Query: 1   MAVVLVVQRWRPYLLETRFIVKTDQKSLKFLLEQRVVQLQYQKWVAKLLGYSFEVVYKPG 60
           MAV+L VQRWRPYLL  +FIVKTDQKSLKFLLEQRV+Q QYQKWV+KLLGYSFEVVYKPG
Sbjct: 14  MAVLLSVQRWRPYLLGAKFIVKTDQKSLKFLLEQRVIQPQYQKWVSKLLGYSFEVVYKPG 73

Query: 61  LESKAADALSRKPLDVQFCGISALVLIDLKIIKEGWRRMRNFRK 104
           LE+KAADALSRKP D+Q   ISA  L+DL++IKE  ++    +K
Sbjct: 74  LENKAADALSRKPPDIQLNAISAPYLVDLQVIKEEVKKDEKLKK 117

The following BLAST results are available for this feature:

BLAST of IVF0015665 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P20825	5.8e-04	32.39	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
Q8I7P9	5.8e-04	36.49	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]

BLAST of IVF0015665 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E461	1.2e-36	87.23	RNA-directed DNA polymerase (Reverse transcriptase) OS=Cucumis melo var. makuwa ...	[more]
A0A5D3E0L0	6.2e-33	73.08	Transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5D3CTT4	8.1e-33	73.08	Transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7UGG9	1.4e-32	77.66	Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7TVZ8	1.8e-32	75.00	Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]

BLAST of IVF0015665 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK30692.1	1.33e-44	87.23	RNA-directed DNA polymerase (Reverse transcriptase) [Cucumis melo var. makuwa]	[more]
KAA0054138.1	5.88e-42	77.66	Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0067391.1	7.85e-41	81.05	transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa] >TYK26532.1 t...	[more]
KAA0042009.1	1.56e-40	81.52	Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa] >TYK17945.1 Tran...	[more]
TYK14862.1	1.81e-40	73.08	transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0015665 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR041373	Reverse transcriptase, RNase H-like domain	PFAM	PF17917	RT_RNaseH	coord: 1..51 e-value: 5.6E-9 score: 36.3
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 2..58

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0015665.1	IVF0015665.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity