IVF0015638 (gene) Melon (IVF77) v1

Overview


Name	IVF0015638
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Gag-pol polyprotein
Location	chr05: 8493531 .. 8493848 (-)
RNA-Seq Expression	IVF0015638
Synteny	IVF0015638

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAGTGTTTCTAAAATCTATCGATAGTAAGTGTTGGAAAGTTGTGATCATCGGATGGGAACATCTATCTACTAAGGATGCTGCTAGTAAAGTCACTCTCAAACCAAAGATATCCTGGTCTAAAGAAGAGGATGAAGCATCTCTTGGAAACTCTCGAGCTTTAAATGTACTATTTAATGGTATAGATCAGAATGTATTTAAACTGATAAATACAGGTACATCAGTTAAAGAAGCATTAAAAATTTTAGAAATGGCTTATGAAGGGACATCTGAAGTTACAATATCTAGACTTTGGATTTTATCCTTAAAAATTTGA

mRNA sequence

ATGATAGTGTTTCTAAAATCTATCGATAGTAAGTGTTGGAAAGTTGTGATCATCGGATGGGAACATCTATCTACTAAGGATGCTGCTAGTAAAGTCACTCTCAAACCAAAGATATCCTGGTCTAAAGAAGAGGATGAAGCATCTCTTGGAAACTCTCGAGCTTTAAATGTACTATTTAATGGTATAGATCAGAATGTATTTAAACTGATAAATACAGGTACATCAGTTAAAGAAGCATTAAAAATTTTAGAAATGGCTTATGAAGGGACATCTGAAGTTACAATATCTAGACTTTGGATTTTATCCTTAAAAATTTGA

Coding sequence (CDS)

ATGATAGTGTTTCTAAAATCTATCGATAGTAAGTGTTGGAAAGTTGTGATCATCGGATGGGAACATCTATCTACTAAGGATGCTGCTAGTAAAGTCACTCTCAAACCAAAGATATCCTGGTCTAAAGAAGAGGATGAAGCATCTCTTGGAAACTCTCGAGCTTTAAATGTACTATTTAATGGTATAGATCAGAATGTATTTAAACTGATAAATACAGGTACATCAGTTAAAGAAGCATTAAAAATTTTAGAAATGGCTTATGAAGGGACATCTGAAGTTACAATATCTAGACTTTGGATTTTATCCTTAAAAATTTGA

Protein sequence

MIVFLKSIDSKCWKVVIIGWEHLSTKDAASKVTLKPKISWSKEEDEASLGNSRALNVLFNGIDQNVFKLINTGTSVKEALKILEMAYEGTSEVTISRLWILSLKI

Homology

[Close]

BLAST of IVF0015638 vs. ExPASy TrEMBL
Match: A0A5D3DD91 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold275G00460 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.1e-32
Identity = 75/85 (88.24%), Postives = 78/85 (91.76%), Query Frame = 0


Query: 1   MIVFLKSIDSKCWKVVIIGWEHLSTKDAASKVTLKPKISWSKEEDEASLGNSRALNVLFN 60
           MIVFLKSIDSKCWKVVIIGWEHLSTKDAASKVTLKPKISWSKEEDEASLGNSRALNVLFN
Sbjct: 66  MIVFLKSIDSKCWKVVIIGWEHLSTKDAASKVTLKPKISWSKEEDEASLGNSRALNVLFN 125

Query: 61  GIDQNVFKLINTGTSVKEALKILEM 86
           GIDQNVFKLINT   + E   I+E+
Sbjct: 126 GIDQNVFKLINTALKMVEDKTIVEL 150

[Close]

BLAST of IVF0015638 vs. ExPASy TrEMBL
Match: A0A5A7V2Z3 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold386G00860 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.1e-32
Identity = 75/85 (88.24%), Postives = 78/85 (91.76%), Query Frame = 0


Query: 1   MIVFLKSIDSKCWKVVIIGWEHLSTKDAASKVTLKPKISWSKEEDEASLGNSRALNVLFN 60
           MIVFLKSIDSKCWKVVIIGWEHLSTKDAASKVTLKPKISWSKEEDEASLGNSRALNVLFN
Sbjct: 71  MIVFLKSIDSKCWKVVIIGWEHLSTKDAASKVTLKPKISWSKEEDEASLGNSRALNVLFN 130

Query: 61  GIDQNVFKLINTGTSVKEALKILEM 86
           GIDQNVFKLINT   + E   I+E+
Sbjct: 131 GIDQNVFKLINTALKMVEDKTIVEL 155

[Close]

BLAST of IVF0015638 vs. ExPASy TrEMBL
Match: A0A5A7TXB8 (Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold114G001800 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 5.8e-31
Identity = 76/104 (73.08%), Postives = 85/104 (81.73%), Query Frame = 0


Query: 1   MIVFLKSIDSKCWKVVIIGWEHLSTKDAASKVTLKPKISWSKEEDEASLGNSRALNVLFN 60
           MI F KSIDSK WKVVI  WEH STKD   KVTLKP+ISWSKEEDE SL NS+ALN L+N
Sbjct: 63  MISFQKSIDSKFWKVVITRWEHPSTKDVVGKVTLKPEISWSKEEDEESLRNSQALNALYN 122

Query: 61  GIDQNVFKLINTGTSVKEALKILEMAYEGTSEVTISRLWILSLK 105
           G+DQNVFKLINT TSVK+A  IL++A EGTS+V ISRL +LS K
Sbjct: 123 GVDQNVFKLINTCTSVKKAWDILKVADEGTSKVKISRLQVLSSK 166

[Close]

BLAST of IVF0015638 vs. ExPASy TrEMBL
Match: A0A5A7SVY3 (Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold862G00220 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 2.1e-28
Identity = 68/104 (65.38%), Postives = 81/104 (77.88%), Query Frame = 0


Query: 1   MIVFLKSIDSKCWKVVIIGWEHLSTKDAASKVTLKPKISWSKEEDEASLGNSRALNVLFN 60
           +I F+KSIDSKCWK +I G EH S KD A K TLK +I+WSK++DEA+ GNSRALN +FN
Sbjct: 35  IIAFIKSIDSKCWKAMIAGLEHPSPKDVAGKETLKQEITWSKDKDEAAFGNSRALNAIFN 94

Query: 61  GIDQNVFKLINTGTSVKEALKILEMAYEGTSEVTISRLWILSLK 105
           G+DQN+FK INT    KEA  ILE AYEGTS+V IS+L ILS K
Sbjct: 95  GVDQNIFKWINTCLFAKEAWNILETAYEGTSKVKISKLQILSSK 138

[Close]

BLAST of IVF0015638 vs. ExPASy TrEMBL
Match: A0A1S3CKP5 (uncharacterized protein LOC103502061 OS=Cucumis melo OX=3656 GN=LOC103502061 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 2.1e-28
Identity = 68/104 (65.38%), Postives = 81/104 (77.88%), Query Frame = 0


Query: 1   MIVFLKSIDSKCWKVVIIGWEHLSTKDAASKVTLKPKISWSKEEDEASLGNSRALNVLFN 60
           +I F+KSIDSKCWK +I G EH S KD A K TLK +I+WSK++DEA+ GNSRALN +FN
Sbjct: 35  IIAFIKSIDSKCWKAMIAGLEHPSPKDVAGKETLKQEITWSKDKDEAAFGNSRALNAIFN 94

Query: 61  GIDQNVFKLINTGTSVKEALKILEMAYEGTSEVTISRLWILSLK 105
           G+DQN+FK INT    KEA  ILE AYEGTS+V IS+L ILS K
Sbjct: 95  GVDQNIFKWINTCLFAKEAWNILETAYEGTSKVKISKLQILSSK 138

[Close]

BLAST of IVF0015638 vs. NCBI nr
Match: TYK21554.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 149 bits (377), Expect = 7.45e-43
Identity = 75/85 (88.24%), Postives = 78/85 (91.76%), Query Frame = 0


Query: 1   MIVFLKSIDSKCWKVVIIGWEHLSTKDAASKVTLKPKISWSKEEDEASLGNSRALNVLFN 60
           MIVFLKSIDSKCWKVVIIGWEHLSTKDAASKVTLKPKISWSKEEDEASLGNSRALNVLFN
Sbjct: 66  MIVFLKSIDSKCWKVVIIGWEHLSTKDAASKVTLKPKISWSKEEDEASLGNSRALNVLFN 125

Query: 61  GIDQNVFKLINTGTSVKEALKILEM 85
           GIDQNVFKLINT   + E   I+E+
Sbjct: 126 GIDQNVFKLINTALKMVEDKTIVEL 150

[Close]

BLAST of IVF0015638 vs. NCBI nr
Match: KAA0060245.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 149 bits (377), Expect = 8.58e-43
Identity = 75/85 (88.24%), Postives = 78/85 (91.76%), Query Frame = 0


Query: 1   MIVFLKSIDSKCWKVVIIGWEHLSTKDAASKVTLKPKISWSKEEDEASLGNSRALNVLFN 60
           MIVFLKSIDSKCWKVVIIGWEHLSTKDAASKVTLKPKISWSKEEDEASLGNSRALNVLFN
Sbjct: 71  MIVFLKSIDSKCWKVVIIGWEHLSTKDAASKVTLKPKISWSKEEDEASLGNSRALNVLFN 130

Query: 61  GIDQNVFKLINTGTSVKEALKILEM 85
           GIDQNVFKLINT   + E   I+E+
Sbjct: 131 GIDQNVFKLINTALKMVEDKTIVEL 155

[Close]

BLAST of IVF0015638 vs. NCBI nr
Match: KAA0046626.1 (gag-proteinase polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 143 bits (360), Expect = 1.58e-39
Identity = 76/104 (73.08%), Postives = 85/104 (81.73%), Query Frame = 0


Query: 1   MIVFLKSIDSKCWKVVIIGWEHLSTKDAASKVTLKPKISWSKEEDEASLGNSRALNVLFN 60
           MI F KSIDSK WKVVI  WEH STKD   KVTLKP+ISWSKEEDE SL NS+ALN L+N
Sbjct: 63  MISFQKSIDSKFWKVVITRWEHPSTKDVVGKVTLKPEISWSKEEDEESLRNSQALNALYN 122

Query: 61  GIDQNVFKLINTGTSVKEALKILEMAYEGTSEVTISRLWILSLK 104
           G+DQNVFKLINT TSVK+A  IL++A EGTS+V ISRL +LS K
Sbjct: 123 GVDQNVFKLINTCTSVKKAWDILKVADEGTSKVKISRLQVLSSK 166

[Close]

BLAST of IVF0015638 vs. NCBI nr
Match: KAA0035422.1 (gag-proteinase polyprotein [Cucumis melo var. makuwa] >TYK25729.1 gag-proteinase polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 134 bits (338), Expect = 1.01e-36
Identity = 68/104 (65.38%), Postives = 81/104 (77.88%), Query Frame = 0


Query: 1   MIVFLKSIDSKCWKVVIIGWEHLSTKDAASKVTLKPKISWSKEEDEASLGNSRALNVLFN 60
           +I F+KSIDSKCWK +I G EH S KD A K TLK +I+WSK++DEA+ GNSRALN +FN
Sbjct: 35  IIAFIKSIDSKCWKAMIAGLEHPSPKDVAGKETLKQEITWSKDKDEAAFGNSRALNAIFN 94

Query: 61  GIDQNVFKLINTGTSVKEALKILEMAYEGTSEVTISRLWILSLK 104
           G+DQN+FK INT    KEA  ILE AYEGTS+V IS+L ILS K
Sbjct: 95  GVDQNIFKWINTCLFAKEAWNILETAYEGTSKVKISKLQILSSK 138

[Close]

BLAST of IVF0015638 vs. NCBI nr
Match: TYK29881.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 129 bits (325), Expect = 4.16e-36
Identity = 64/95 (67.37%), Postives = 76/95 (80.00%), Query Frame = 0


Query: 10  SKCWKVVIIGWEHLSTKDAASKVTLKPKISWSKEEDEASLGNSRALNVLFNGIDQNVFKL 69
           SKCWKVV+IGWE  S KD  SK  LKPKI+W+KEEDE SLGNS ALN LFN + QNVFK+
Sbjct: 3   SKCWKVVLIGWELSSAKDTTSKDVLKPKITWTKEEDETSLGNSCALNALFNRVSQNVFKI 62

Query: 70  INTGTSVKEALKILEMAYEGTSEVTISRLWILSLK 104
            NT TS KEA  ILE+AYEGTS++ +S+L IL+L+
Sbjct: 63  NNTYTSAKEAWNILEVAYEGTSKIKVSKLQILTLR 97

The following BLAST results are available for this feature:

BLAST of IVF0015638 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0015638 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DD91	1.1e-32	88.24	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold275G...	[more]
A0A5A7V2Z3	1.1e-32	88.24	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold386G...	[more]
A0A5A7TXB8	5.8e-31	73.08	Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaff...	[more]
A0A5A7SVY3	2.1e-28	65.38	Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A1S3CKP5	2.1e-28	65.38	uncharacterized protein LOC103502061 OS=Cucumis melo OX=3656 GN=LOC103502061 PE=...	[more]

BLAST of IVF0015638 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK21554.1	7.45e-43	88.24	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0060245.1	8.58e-43	88.24	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0046626.1	1.58e-39	73.08	gag-proteinase polyprotein [Cucumis melo var. makuwa]	[more]
KAA0035422.1	1.01e-36	65.38	gag-proteinase polyprotein [Cucumis melo var. makuwa] >TYK25729.1 gag-proteinase...	[more]
TYK29881.1	4.16e-36	67.37	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0015638 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0015638.1	IVF0015638.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043170	macromolecule metabolic process
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0044238	primary metabolic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005488	binding