IVF0015573 (gene) Melon (IVF77) v1

Overview
NameIVF0015573
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Descriptionphosphopantothenoylcysteine decarboxylase subunit VHS3-like
Locationchr11: 11641644 .. 11641853 (-)
RNA-Seq ExpressionIVF0015573
SyntenyIVF0015573
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGAGGATGATCCTATTGACTTCAACCGTATTAAAGATGAAGATGATAATTCTATCGACTGCAACTGCATTAAAGATGAAGATGATGCTCCTATCGGCTACGACTGTAATGAAGATGAAGATGATGCTCCTATCCGCTGCGACCACATTGAAGATAAAGATGATGCTCCTATCAGCTGCGACCACATTTTCCTGTCTTTCTCTTAG

mRNA sequence

ATGGAAGAGGATGATCCTATTGACTTCAACCGTATTAAAGATGAAGATGATAATTCTATCGACTGCAACTGCATTAAAGATGAAGATGATGCTCCTATCGGCTACGACTGTAATGAAGATGAAGATGATGCTCCTATCCGCTGCGACCACATTGAAGATAAAGATGATGCTCCTATCAGCTGCGACCACATTTTCCTGTCTTTCTCTTAG

Coding sequence (CDS)

ATGGAAGAGGATGATCCTATTGACTTCAACCGTATTAAAGATGAAGATGATAATTCTATCGACTGCAACTGCATTAAAGATGAAGATGATGCTCCTATCGGCTACGACTGTAATGAAGATGAAGATGATGCTCCTATCCGCTGCGACCACATTGAAGATAAAGATGATGCTCCTATCAGCTGCGACCACATTTTCCTGTCTTTCTCTTAG

Protein sequence

MEEDDPIDFNRIKDEDDNSIDCNCIKDEDDAPIGYDCNEDEDDAPIRCDHIEDKDDAPISCDHIFLSFS
Homology
BLAST of IVF0015573 vs. ExPASy TrEMBL
Match: A0A5D3BPS5 (Phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold775G00260 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 6.4e-10
Identity = 42/64 (65.62%), Postives = 46/64 (71.88%), Query Frame = 0

Query: 1  MEEDDPIDFNRIKDEDDNSIDCNCIKDEDDAPIGYDCNEDEDDAPIRCDHIEDKDDAPIS 60
          MEEDD IDFN IK EDD+SID N IK EDD  I  +  EDED  PI C+ IED+DD PI 
Sbjct: 14 MEEDDSIDFNHIKHEDDDSIDFNHIKHEDDDSIDSNHIEDEDGDPIDCNCIEDEDDDPID 73

Query: 61 CDHI 65
          CDHI
Sbjct: 74 CDHI 77

BLAST of IVF0015573 vs. ExPASy TrEMBL
Match: A0A1S4E1H3 (phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucumis melo OX=3656 GN=LOC107991530 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 6.4e-10
Identity = 42/64 (65.62%), Postives = 46/64 (71.88%), Query Frame = 0

Query: 1  MEEDDPIDFNRIKDEDDNSIDCNCIKDEDDAPIGYDCNEDEDDAPIRCDHIEDKDDAPIS 60
          MEEDD IDFN IK EDD+SID N IK EDD  I  +  EDED  PI C+ IED+DD PI 
Sbjct: 14 MEEDDSIDFNHIKHEDDDSIDFNHIKHEDDDSIDSNHIEDEDGDPIDCNCIEDEDDDPID 73

Query: 61 CDHI 65
          CDHI
Sbjct: 74 CDHI 77

BLAST of IVF0015573 vs. ExPASy TrEMBL
Match: A0A5D3DSX1 (Prostatic spermine-binding protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G00120 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.3e-07
Identity = 35/66 (53.03%), Postives = 43/66 (65.15%), Query Frame = 0

Query: 2   EEDDPIDFNRIKDEDDNSIDCNCIKDEDDAPIG---YDCNEDEDDAPIRCDHIEDKDDAP 61
           E  DP+D   IK EDD+ +DC C KDEDD P+     +  +DEDD  I C HIED+DD P
Sbjct: 80  ENGDPLDCKCIKYEDDDPLDCECFKDEDDDPLNCRYIEDEDDEDDDLISCVHIEDEDDDP 139

Query: 62  ISCDHI 65
           + CDHI
Sbjct: 140 LGCDHI 145

BLAST of IVF0015573 vs. ExPASy TrEMBL
Match: A0A5D3DTM9 (Phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold124G001220 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 5.0e-07
Identity = 37/68 (54.41%), Postives = 46/68 (67.65%), Query Frame = 0

Query: 1  MEEDDPIDFNRIKDEDDNSIDCNCIKDEDDAPIGYDCNEDEDDAPIRCDHIEDKDDAPIS 60
          MEEDDPIDF+  +DEDD+SID +C + EDD  IG D  EDEDD  I CD  ED+DD  + 
Sbjct: 11 MEEDDPIDFDSTEDEDDDSIDFDCTEHEDDDLIGCDLFEDEDDDFIDCDRFEDEDDDRLG 70

Query: 61 C---DHIF 66
              DH++
Sbjct: 71 YEDDDHLY 78

BLAST of IVF0015573 vs. ExPASy TrEMBL
Match: A0A5D3DQ88 (Phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold436G00280 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 6.6e-07
Identity = 41/71 (57.75%), Postives = 45/71 (63.38%), Query Frame = 0

Query: 3  EDDPIDFNRIKDEDDNSIDCNCIKDEDDAPIGYDCN-----------EDEDDAPIRCDHI 62
          +DDPIDFNRIKDEDD+SID   I+DEDD  I +              EDEDD  I CDHI
Sbjct: 8  DDDPIDFNRIKDEDDDSIDF-YIEDEDDDSIDFYIENEDDDFIDFYIEDEDDDSIDCDHI 67

BLAST of IVF0015573 vs. NCBI nr
Match: KAA0039603.1 (phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis melo var. makuwa] >TYK01703.1 phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis melo var. makuwa])

HSP 1 Score: 72.4 bits (176), Expect = 1.66e-14
Identity = 42/64 (65.62%), Postives = 46/64 (71.88%), Query Frame = 0

Query: 1  MEEDDPIDFNRIKDEDDNSIDCNCIKDEDDAPIGYDCNEDEDDAPIRCDHIEDKDDAPIS 60
          MEEDD IDFN IK EDD+SID N IK EDD  I  +  EDED  PI C+ IED+DD PI 
Sbjct: 14 MEEDDSIDFNHIKHEDDDSIDFNHIKHEDDDSIDSNHIEDEDGDPIDCNCIEDEDDDPID 73

Query: 61 CDHI 64
          CDHI
Sbjct: 74 CDHI 77

BLAST of IVF0015573 vs. NCBI nr
Match: XP_016902073.1 (PREDICTED: phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis melo])

HSP 1 Score: 72.4 bits (176), Expect = 9.52e-14
Identity = 42/64 (65.62%), Postives = 46/64 (71.88%), Query Frame = 0

Query: 1  MEEDDPIDFNRIKDEDDNSIDCNCIKDEDDAPIGYDCNEDEDDAPIRCDHIEDKDDAPIS 60
          MEEDD IDFN IK EDD+SID N IK EDD  I  +  EDED  PI C+ IED+DD PI 
Sbjct: 14 MEEDDSIDFNHIKHEDDDSIDFNHIKHEDDDSIDSNHIEDEDGDPIDCNCIEDEDDDPID 73

Query: 61 CDHI 64
          CDHI
Sbjct: 74 CDHI 77

BLAST of IVF0015573 vs. NCBI nr
Match: TYK26809.1 (phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis melo var. makuwa])

HSP 1 Score: 62.8 bits (151), Expect = 2.07e-10
Identity = 37/68 (54.41%), Postives = 46/68 (67.65%), Query Frame = 0

Query: 1  MEEDDPIDFNRIKDEDDNSIDCNCIKDEDDAPIGYDCNEDEDDAPIRCDHIEDKDDAPIS 60
          MEEDDPIDF+  +DEDD+SID +C + EDD  IG D  EDEDD  I CD  ED+DD  + 
Sbjct: 11 MEEDDPIDFDSTEDEDDDSIDFDCTEHEDDDLIGCDLFEDEDDDFIDCDRFEDEDDDRLG 70

Query: 61 C---DHIF 65
              DH++
Sbjct: 71 YEDDDHLY 78

BLAST of IVF0015573 vs. NCBI nr
Match: KAA0047489.1 (prostatic spermine-binding protein-like [Cucumis melo var. makuwa] >TYK26455.1 prostatic spermine-binding protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 64.7 bits (156), Expect = 2.35e-10
Identity = 34/63 (53.97%), Postives = 42/63 (66.67%), Query Frame = 0

Query: 5   DPIDFNRIKDEDDNSIDCNCIKDEDDAPIG---YDCNEDEDDAPIRCDHIEDKDDAPISC 64
           DP+D   IK EDD+ +DC C KDEDD P+     +  +DEDD  I C HIED+DD P+ C
Sbjct: 83  DPLDCKCIKYEDDDPLDCECFKDEDDDPLNCRYIEDEDDEDDDLISCVHIEDEDDDPLGC 142

BLAST of IVF0015573 vs. NCBI nr
Match: XP_008456992.1 (PREDICTED: phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis melo] >TYK25823.1 phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis melo var. makuwa])

HSP 1 Score: 62.4 bits (150), Expect = 4.24e-10
Identity = 41/71 (57.75%), Postives = 45/71 (63.38%), Query Frame = 0

Query: 3  EDDPIDFNRIKDEDDNSIDCNCIKDEDDAPIGYDCN-----------EDEDDAPIRCDHI 62
          +DDPIDFNRIKDEDD+SID   I+DEDD  I +              EDEDD  I CDHI
Sbjct: 8  DDDPIDFNRIKDEDDDSIDF-YIEDEDDDSIDFYIENEDDDFIDFYIEDEDDDSIDCDHI 67

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BPS56.4e-1065.63Phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucumis melo var.... [more]
A0A1S4E1H36.4e-1065.63phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucumis melo OX=3... [more]
A0A5D3DSX11.3e-0753.03Prostatic spermine-binding protein-like OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5D3DTM95.0e-0754.41Phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucumis melo var.... [more]
A0A5D3DQ886.6e-0757.75Phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucumis melo var.... [more]
Match NameE-valueIdentityDescription
KAA0039603.11.66e-1465.63phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis melo var. m... [more]
XP_016902073.19.52e-1465.63PREDICTED: phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis ... [more]
TYK26809.12.07e-1054.41phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis melo var. m... [more]
KAA0047489.12.35e-1053.97prostatic spermine-binding protein-like [Cucumis melo var. makuwa] >TYK26455.1 p... [more]
XP_008456992.14.24e-1057.75PREDICTED: phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis ... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0015573.1IVF0015573.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0046872 metal ion binding