IVF0015557 (gene) Melon (IVF77) v1

Overview
NameIVF0015557
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Locationchr05: 6806443 .. 6806888 (+)
RNA-Seq ExpressionIVF0015557
SyntenyIVF0015557
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTTGGTGCTTCCAAACCAGCCTCATGCTCTTTCGAGAAAAGTTATCTCAGGAAAATATAAAGCTTCCTATGCTGGAGAAATCCCCTATAAAAGTAAACACAACAGCTCTAGAGCTCCTTGGTTCTCCATAAAAAGGGACTGAACTGGTTCAAGAGGAACTACAAGTGGGAGGTCAACAATGGCGAAAATCTATGCTTCTTGTATAAAAATTGGACTAACAGGGACCCACTTTTCAAAGCTTTTCCTAAAACGTTTGCCTTAGCCATTGACAAAAATGCAACCATAAAAGATAGATGGGATTATGCTCGTAAGGCGTGGACTTTGGACTTCATAAGAACTTTGAATGAAAGGGAAACAAACACATGGAACTACATTAAAGGTGATTCAATTTTCTCTACCAGAAAAAGGATGCAGCAAGCCAATATGGAATCTCAACAGTGA

mRNA sequence

ATGGCTTTGGTGCTTCCAAACCAGCCTCATGCTCTTTCGAGAAAAGTTATCTCAGGAAAATATAAAGCTTCCTATGCTGGAGAAATCCCCTATAAAAGTAAACACAACAGCTCTAGAGCTCCTTGGAACTACAAGTGGGAGGTCAACAATGGCGAAAATCTATGCTTCTTGTATAAAAATTGGACTAACAGGGACCCACTTTTCAAAGCTTTTCCTAAAACGTTTGCCTTAGCCATTGACAAAAATGCAACCATAAAAGATAGATGGGATTATGCTCGTAAGGCGTGGACTTTGGACTTCATAAGAACTTTGAATGAAAGGGAAACAAACACATGGAACTACATTAAAGGTGATTCAATTTTCTCTACCAGAAAAAGGATGCAGCAAGCCAATATGGAATCTCAACAGTGA

Coding sequence (CDS)

ATGGCTTTGGTGCTTCCAAACCAGCCTCATGCTCTTTCGAGAAAAGTTATCTCAGGAAAATATAAAGCTTCCTATGCTGGAGAAATCCCCTATAAAAGTAAACACAACAGCTCTAGAGCTCCTTGGAACTACAAGTGGGAGGTCAACAATGGCGAAAATCTATGCTTCTTGTATAAAAATTGGACTAACAGGGACCCACTTTTCAAAGCTTTTCCTAAAACGTTTGCCTTAGCCATTGACAAAAATGCAACCATAAAAGATAGATGGGATTATGCTCGTAAGGCGTGGACTTTGGACTTCATAAGAACTTTGAATGAAAGGGAAACAAACACATGGAACTACATTAAAGGTGATTCAATTTTCTCTACCAGAAAAAGGATGCAGCAAGCCAATATGGAATCTCAACAGTGA

Protein sequence

MALVLPNQPHALSRKVISGKYKASYAGEIPYKSKHNSSRAPWNYKWEVNNGENLCFLYKNWTNRDPLFKAFPKTFALAIDKNATIKDRWDYARKAWTLDFIRTLNERETNTWNYIKGDSIFSTRKRMQQANMESQQ
Homology
BLAST of IVF0015557 vs. ExPASy TrEMBL
Match: A0A5D3CYF8 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G001020 PE=4 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 8.8e-72
Identity = 136/148 (91.89%), Postives = 136/148 (91.89%), Query Frame = 0

Query: 1   MALVLPNQPHALSRKVISGKYKASYAGEIPYKSKHNSSRAPW------------NYKWEV 60
           MALVLPNQPHALSRKVISGKYKASYAGEIPYKSKHNSSRAPW            NYKWEV
Sbjct: 1   MALVLPNQPHALSRKVISGKYKASYAGEIPYKSKHNSSRAPWFSIKKGLNWFKRNYKWEV 60

Query: 61  NNGENLCFLYKNWTNRDPLFKAFPKTFALAIDKNATIKDRWDYARKAWTLDFIRTLNERE 120
           NNGENLCFLYKNWTNRDPLFKAFPKTFALAIDKNATIKDRWDYARKAWTLDFIRTLNERE
Sbjct: 61  NNGENLCFLYKNWTNRDPLFKAFPKTFALAIDKNATIKDRWDYARKAWTLDFIRTLNERE 120

Query: 121 TNTWNYIKGDSIFSTRKRMQQANMESQQ 137
           TNTWNYIKGDSIFSTRKRMQQANMESQQ
Sbjct: 121 TNTWNYIKGDSIFSTRKRMQQANMESQQ 148

BLAST of IVF0015557 vs. ExPASy TrEMBL
Match: A0A5D3D793 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold443G00540 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 4.7e-33
Identity = 77/131 (58.78%), Postives = 89/131 (67.94%), Query Frame = 0

Query: 7   NQPHALSRKVISGKYKASYAGEIPYKSKHNSSRAPW------------NYKWEVNNGENL 66
           ++P AL RKVI+ KY+A++AGEIP KSK+NSSR PW            NYK +VNNG NL
Sbjct: 18  SEPCALWRKVITAKYEATFAGEIPSKSKYNSSRTPWSYITKRLNWFERNYKLKVNNGGNL 77

Query: 67  CFLYKNWTNRDPLFKAFPKTFALAIDKNATIKDRWDYARKAWTLDFIRTLNERETNTWNY 126
            F Y NWTNR PL+KAF + FALA DKNATIKD WD   K WTL+  R LNERETNTWN 
Sbjct: 78  SFWYANWTNRGPLYKAFLRMFALATDKNATIKDGWDDTHKTWTLNHRRPLNERETNTWNC 137

BLAST of IVF0015557 vs. ExPASy TrEMBL
Match: A0A5A7TTK1 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold216G00450 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 5.1e-19
Identity = 47/118 (39.83%), Postives = 69/118 (58.47%), Query Frame = 0

Query: 7   NQPHALSRKVISGKYKASYAGEIPYKSKHNSSRAPW------------NYKWEVNNGENL 66
           ++P AL R++I  KYK  Y G+IP     ++S+APW            N  W++NNG+ +
Sbjct: 720 SEPKALWRRLIQCKYKGIYPGDIPSNISSSTSKAPWRSIIDNVDWFRSNQSWDLNNGDQI 779

Query: 67  CFLYKNWTNRDPLFKAFPKTFALAIDKNATIKDRWDYARKAWTLDFIRTLNERETNTW 113
            F Y NW+    L  A+P+ FAL++DK+ T+KD W+     WT+ F R LN+RE N W
Sbjct: 780 SFWYSNWSIEGRLLTAYPRLFALSLDKDITVKDAWNTIDNQWTIRFRRELNDRERNKW 837

BLAST of IVF0015557 vs. ExPASy TrEMBL
Match: A0A5A7UTS4 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3840G00080 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 3.3e-18
Identity = 46/121 (38.02%), Postives = 72/121 (59.50%), Query Frame = 0

Query: 7   NQPHALSRKVISGKYKASYAGEIPYKSKHNSSRAPW------------NYKWEVNNGENL 66
           ++P++L R++I  KYK  + G+IP     +SS+APW            N+ W++NNG+ +
Sbjct: 676 SEPNSLWRRLIHIKYKGKHPGDIPSNISSSSSKAPWRSIINNIDWFKSNHGWDLNNGDQI 735

Query: 67  CFLYKNWTNRDPLFKAFPKTFALAIDKNATIKDRWDYARKAWTLDFIRTLNERETNTWNY 116
            F Y NW+    L  A+P+ FAL++DK ++IKD W+     W + F R LN+RE +TW  
Sbjct: 736 SFWYSNWSQEGCLSTAYPRLFALSLDKESSIKDVWNSNNNQWEITFRRKLNDRELSTWEK 795

BLAST of IVF0015557 vs. ExPASy TrEMBL
Match: A0A5A7UV84 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold98G001710 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 5.6e-18
Identity = 45/121 (37.19%), Postives = 69/121 (57.02%), Query Frame = 0

Query: 7    NQPHALSRKVISGKYKASYAGEIPYKSKHNSSRAPW------------NYKWEVNNGENL 66
            ++P+AL R++I  KYK  + G+IP  +  +SS+APW            N  W++NNG+ +
Sbjct: 1221 SEPNALWRRLIQCKYKGKHPGDIPSNNSSSSSKAPWRSIIDNIDWFKSNQSWDLNNGDQI 1280

Query: 67   CFLYKNWTNRDPLFKAFPKTFALAIDKNATIKDRWDYARKAWTLDFIRTLNERETNTWNY 116
             F Y NW+    L  A+P+ FAL +DK  ++KD W+     W ++F R LN+RE   W  
Sbjct: 1281 SFWYSNWSQEGCLSTAYPRLFALTLDKEISVKDAWNTIDNQWAINFRRELNDRERCNWEK 1340

BLAST of IVF0015557 vs. NCBI nr
Match: KAA0032006.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK16827.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 278 bits (710), Expect = 4.76e-94
Identity = 136/148 (91.89%), Postives = 136/148 (91.89%), Query Frame = 0

Query: 1   MALVLPNQPHALSRKVISGKYKASYAGEIPYKSKHNSSRAPW------------NYKWEV 60
           MALVLPNQPHALSRKVISGKYKASYAGEIPYKSKHNSSRAPW            NYKWEV
Sbjct: 1   MALVLPNQPHALSRKVISGKYKASYAGEIPYKSKHNSSRAPWFSIKKGLNWFKRNYKWEV 60

Query: 61  NNGENLCFLYKNWTNRDPLFKAFPKTFALAIDKNATIKDRWDYARKAWTLDFIRTLNERE 120
           NNGENLCFLYKNWTNRDPLFKAFPKTFALAIDKNATIKDRWDYARKAWTLDFIRTLNERE
Sbjct: 61  NNGENLCFLYKNWTNRDPLFKAFPKTFALAIDKNATIKDRWDYARKAWTLDFIRTLNERE 120

Query: 121 TNTWNYIKGDSIFSTRKRMQQANMESQQ 136
           TNTWNYIKGDSIFSTRKRMQQANMESQQ
Sbjct: 121 TNTWNYIKGDSIFSTRKRMQQANMESQQ 148

BLAST of IVF0015557 vs. NCBI nr
Match: TYK19414.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 149 bits (376), Expect = 2.07e-42
Identity = 76/127 (59.84%), Postives = 88/127 (69.29%), Query Frame = 0

Query: 7   NQPHALSRKVISGKYKASYAGEIPYKSKHNSSRAPW------------NYKWEVNNGENL 66
           ++P AL RKVI+ KY+A++AGEIP KSK+NSSR PW            NYK +VNNG NL
Sbjct: 18  SEPCALWRKVITAKYEATFAGEIPSKSKYNSSRTPWSYITKRLNWFERNYKLKVNNGGNL 77

Query: 67  CFLYKNWTNRDPLFKAFPKTFALAIDKNATIKDRWDYARKAWTLDFIRTLNERETNTWNY 121
            F Y NWTNR PL+KAF + FALA DKNATIKD WD   K WTL+  R LNERETNTWN 
Sbjct: 78  SFWYANWTNRGPLYKAFLRMFALATDKNATIKDGWDDTHKTWTLNHRRPLNERETNTWNC 137

BLAST of IVF0015557 vs. NCBI nr
Match: KAA0046762.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 102 bits (255), Expect = 2.68e-22
Identity = 47/118 (39.83%), Postives = 69/118 (58.47%), Query Frame = 0

Query: 7   NQPHALSRKVISGKYKASYAGEIPYKSKHNSSRAPW------------NYKWEVNNGENL 66
           ++P AL R++I  KYK  Y G+IP     ++S+APW            N  W++NNG+ +
Sbjct: 720 SEPKALWRRLIQCKYKGIYPGDIPSNISSSTSKAPWRSIIDNVDWFRSNQSWDLNNGDQI 779

Query: 67  CFLYKNWTNRDPLFKAFPKTFALAIDKNATIKDRWDYARKAWTLDFIRTLNERETNTW 112
            F Y NW+    L  A+P+ FAL++DK+ T+KD W+     WT+ F R LN+RE N W
Sbjct: 780 SFWYSNWSIEGRLLTAYPRLFALSLDKDITVKDAWNTIDNQWTIRFRRELNDRERNKW 837

BLAST of IVF0015557 vs. NCBI nr
Match: KAA0058554.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK01631.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 100 bits (248), Expect = 2.34e-21
Identity = 46/121 (38.02%), Postives = 72/121 (59.50%), Query Frame = 0

Query: 7   NQPHALSRKVISGKYKASYAGEIPYKSKHNSSRAPW------------NYKWEVNNGENL 66
           ++P++L R++I  KYK  + G+IP     +SS+APW            N+ W++NNG+ +
Sbjct: 676 SEPNSLWRRLIHIKYKGKHPGDIPSNISSSSSKAPWRSIINNIDWFKSNHGWDLNNGDQI 735

Query: 67  CFLYKNWTNRDPLFKAFPKTFALAIDKNATIKDRWDYARKAWTLDFIRTLNERETNTWNY 115
            F Y NW+    L  A+P+ FAL++DK ++IKD W+     W + F R LN+RE +TW  
Sbjct: 736 SFWYSNWSQEGCLSTAYPRLFALSLDKESSIKDVWNSNNNQWEITFRRKLNDRELSTWEK 795

BLAST of IVF0015557 vs. NCBI nr
Match: TYK11012.1 (uncharacterized protein E5676_scaffold874G00540 [Cucumis melo var. makuwa])

HSP 1 Score: 99.4 bits (246), Expect = 4.50e-21
Identity = 45/121 (37.19%), Postives = 69/121 (57.02%), Query Frame = 0

Query: 7    NQPHALSRKVISGKYKASYAGEIPYKSKHNSSRAPW------------NYKWEVNNGENL 66
            ++P+AL R++I  KYK  + G+IP  +  +SS+APW            N  W++NNG+ +
Sbjct: 1221 SEPNALWRRLIQCKYKGKHPGDIPSNNSSSSSKAPWRSIIDNIDWFKSNQSWDLNNGDQI 1280

Query: 67   CFLYKNWTNRDPLFKAFPKTFALAIDKNATIKDRWDYARKAWTLDFIRTLNERETNTWNY 115
             F Y NW+    L  A+P+ FAL +DK  ++KD W+     W ++F R LN+RE   W  
Sbjct: 1281 SFWYSNWSQEGCLSTAYPRLFALTLDKEISVKDAWNTIDNQWAINFRRELNDRERCNWEK 1340

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CYF88.8e-7291.89LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5D3D7934.7e-3358.78LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5A7TTK15.1e-1939.83LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5A7UTS43.3e-1838.02LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5A7UV845.6e-1837.19Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1... [more]
Match NameE-valueIdentityDescription
KAA0032006.14.76e-9491.89LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK168... [more]
TYK19414.12.07e-4259.84LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
KAA0046762.12.68e-2239.83LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
KAA0058554.12.34e-2138.02LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK016... [more]
TYK11012.14.50e-2137.19uncharacterized protein E5676_scaffold874G00540 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0015557.2IVF0015557.2mRNA